Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81403 * 102.99850 * 2 1 4 4 C 1.53002 * 109.47234 * 59.99993 * 3 2 1 5 5 C 1.52998 * 109.46845 * 299.99712 * 3 2 1 6 6 C 1.50698 * 109.46942 * 180.02562 * 3 2 1 7 7 N 1.31311 * 126.07523 * 180.02562 * 6 3 2 8 8 N 1.28568 * 110.20372 * 179.97438 * 7 6 3 9 9 C 1.33023 * 109.35654 * 0.02562 * 8 7 6 10 10 C 1.40130 * 126.65604 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99875 * 174.28370 * 10 9 8 12 12 C 1.40233 * 120.00002 * 354.27817 * 10 9 8 13 13 N 1.30695 * 120.00226 * 6.01102 * 12 10 9 14 14 Si 1.86802 * 120.00177 * 186.01134 * 12 10 9 15 15 H 1.48500 * 109.46838 * 94.98072 * 14 12 10 16 16 H 1.48500 * 109.47243 * 214.98025 * 14 12 10 17 17 H 1.48504 * 109.46693 * 334.98283 * 14 12 10 18 18 N 1.35301 * 126.07784 * 359.71375 * 6 3 2 19 19 H 0.96998 * 127.04511 * 359.97438 * 18 6 3 20 20 H 1.09005 * 109.47180 * 60.00101 * 1 2 3 21 21 H 1.09002 * 109.47006 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47267 * 300.00134 * 1 2 3 23 23 H 1.09000 * 109.47067 * 299.99747 * 4 3 2 24 24 H 1.08995 * 109.46922 * 59.99745 * 4 3 2 25 25 H 1.08995 * 109.46923 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46749 * 179.97438 * 5 3 2 27 27 H 1.08998 * 109.47748 * 300.00335 * 5 3 2 28 28 H 1.09000 * 109.47266 * 60.00370 * 5 3 2 29 29 H 0.96993 * 119.99789 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6340 2.4267 1.2492 5 6 1.6341 2.4266 -1.2493 6 6 3.7195 1.9374 -0.0006 7 7 4.3681 3.0791 -0.0003 8 7 5.6366 2.8691 -0.0005 9 6 5.8665 1.5589 -0.0015 10 6 7.1184 0.9292 -0.0015 11 1 7.1826 -0.1449 0.0907 12 6 8.2878 1.6939 -0.1215 13 7 8.2189 2.9990 -0.1150 14 14 9.9443 0.8470 -0.2905 15 1 10.2960 0.7304 -1.7285 16 1 10.9822 1.6455 0.4098 17 1 9.8712 -0.5080 0.3127 18 7 4.6344 0.9406 0.0043 19 1 4.4592 -0.0134 0.0093 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.5510 2.3039 1.2492 24 1 2.0529 1.9571 2.1392 25 1 1.8788 3.4888 1.2490 26 1 1.8789 3.4888 -1.2490 27 1 2.0529 1.9570 -2.1393 28 1 0.5510 2.3038 -1.2493 29 1 9.0277 3.5278 -0.1984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307491621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 54.091575 kcal Electronic energy + Delta-G solvation = -13688.066007 eV Core-core repulsion = 11352.221820 eV Total energy + Delta-G solvation = -2335.844187 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76414 -35.24914 -33.46711 -31.78737 -29.28173 -28.34143 -27.08833 -25.41159 -22.35803 -20.85637 -19.44107 -17.46438 -16.41999 -15.50223 -14.78575 -14.27012 -14.23026 -14.07311 -13.69506 -13.09261 -12.81463 -12.71236 -11.79661 -11.77495 -11.51540 -11.28441 -11.12160 -11.03364 -10.91403 -10.33361 -9.72050 -9.50165 -9.39178 -8.96908 -8.31934 -7.60540 -7.53034 -6.57436 -4.53481 1.76917 2.67733 2.99033 3.11426 3.15153 3.52367 3.93905 4.38571 4.49090 5.07320 5.11204 5.15070 5.29450 5.43278 5.49583 5.64472 5.75292 5.97754 6.07711 6.10943 6.40793 6.51028 6.99069 7.11689 7.31751 7.56311 8.21514 8.28969 8.81051 9.07790 10.36177 10.78962 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.052753 B = 0.007109 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.644325 B = 3937.529358 C = 4274.719271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.268 6.268 3 C 0.091 3.909 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.080 3.920 7 N -0.286 5.286 8 N -0.337 5.337 9 C 0.338 3.662 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.080 3.920 13 N -0.740 5.740 14 Si 0.919 3.081 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.263 1.263 18 N -0.626 5.626 19 H 0.405 0.595 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -5.003 -0.101 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.041 6.041 3 C -0.021 4.021 4 C -0.193 4.193 5 C -0.193 4.193 6 C -0.187 4.187 7 N -0.130 5.130 8 N -0.184 5.184 9 C 0.093 3.907 10 C -0.497 4.497 11 H 0.101 0.899 12 C -0.145 4.145 13 N -0.364 5.364 14 Si 0.743 3.257 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.187 1.187 18 N -0.245 5.245 19 H 0.241 0.759 20 H 0.095 0.905 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.667 -3.972 -0.100 10.451 hybrid contribution -0.358 -1.352 -0.084 1.402 sum -10.025 -5.325 -0.184 11.353 Atomic orbital electron populations 1.23402 0.94499 1.05988 1.04902 1.86673 1.07072 1.12449 1.97948 1.20478 0.90983 0.91589 0.99098 1.22065 0.98953 1.02223 0.96090 1.22063 0.98948 1.02220 0.96087 1.22487 0.90078 0.87205 1.18906 1.74000 1.01977 1.21718 1.15301 1.75606 1.02472 1.10780 1.29578 1.21572 0.85082 0.88947 0.95101 1.18167 0.87103 0.94496 1.49891 0.89938 1.25765 1.00694 0.94667 0.93329 1.69962 1.30198 1.05379 1.30846 0.86142 0.80542 0.79954 0.79071 1.19527 1.20078 1.18696 1.43852 1.06767 1.08666 1.65255 0.75860 0.90463 0.88434 0.90471 0.92873 0.91741 0.90452 0.90455 0.91728 0.92872 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.87 101.05 1.00 -0.26 15 2 S -0.27 -4.16 20.05 -107.50 -2.15 -6.32 15 3 C 0.09 1.60 0.92 -91.77 -0.08 1.52 15 4 C -0.13 -2.10 8.30 37.16 0.31 -1.79 15 5 C -0.13 -2.10 8.30 37.16 0.31 -1.79 15 6 C 0.08 1.87 6.46 -154.50 -1.00 0.87 15 7 N -0.29 -7.78 12.21 32.88 0.40 -7.38 15 8 N -0.34 -10.17 10.55 31.22 0.33 -9.84 15 9 C 0.34 9.55 7.72 -155.21 -1.20 8.36 15 10 C -0.46 -12.40 9.46 -38.12 -0.36 -12.76 15 11 H 0.08 2.06 7.86 -52.48 -0.41 1.65 15 12 C 0.08 2.10 5.49 -17.29 -0.09 2.01 15 13 N -0.74 -20.65 11.98 55.56 0.67 -19.99 15 14 Si 0.92 18.98 29.57 -169.99 -5.03 13.95 15 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 16 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 18 N -0.63 -15.20 5.99 -9.38 -0.06 -15.25 15 19 H 0.40 8.76 7.87 -40.82 -0.32 8.44 15 20 H 0.08 0.74 7.00 -51.92 -0.36 0.38 15 21 H 0.10 0.88 8.14 -51.92 -0.42 0.45 15 22 H 0.08 0.74 7.00 -51.92 -0.36 0.38 15 23 H 0.05 0.65 6.68 -51.93 -0.35 0.31 15 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.05 0.66 6.68 -51.93 -0.35 0.31 15 29 H 0.28 7.00 8.29 -40.82 -0.34 6.66 15 LS Contribution 260.26 15.07 3.92 3.92 Total: -1.00 -31.88 260.26 -6.44 -38.33 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.40 Total: 6.43 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.12 Total: -3.85 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 1.34 Total: -52.46 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.15 Total: -6.32 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.88 -6.44 -38.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307491621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.418 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds