Wall clock time and date at job start Mon Mar 30 2020 03:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81403 * 102.99850 * 2 1 4 4 C 1.53002 * 109.47234 * 59.99993 * 3 2 1 5 5 C 1.52998 * 109.46845 * 299.99712 * 3 2 1 6 6 C 1.50698 * 109.46942 * 180.02562 * 3 2 1 7 7 N 1.31311 * 126.07523 * 180.02562 * 6 3 2 8 8 N 1.28568 * 110.20372 * 179.97438 * 7 6 3 9 9 C 1.33023 * 109.35654 * 0.02562 * 8 7 6 10 10 C 1.40130 * 126.65604 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99875 * 174.28370 * 10 9 8 12 12 C 1.40233 * 120.00002 * 354.27817 * 10 9 8 13 13 N 1.30695 * 120.00226 * 6.01102 * 12 10 9 14 14 Si 1.86802 * 120.00177 * 186.01134 * 12 10 9 15 15 H 1.48500 * 109.46838 * 94.98072 * 14 12 10 16 16 H 1.48500 * 109.47243 * 214.98025 * 14 12 10 17 17 H 1.48504 * 109.46693 * 334.98283 * 14 12 10 18 18 N 1.35301 * 126.07784 * 359.71375 * 6 3 2 19 19 H 0.96998 * 127.04511 * 359.97438 * 18 6 3 20 20 H 1.09005 * 109.47180 * 60.00101 * 1 2 3 21 21 H 1.09002 * 109.47006 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47267 * 300.00134 * 1 2 3 23 23 H 1.09000 * 109.47067 * 299.99747 * 4 3 2 24 24 H 1.08995 * 109.46922 * 59.99745 * 4 3 2 25 25 H 1.08995 * 109.46923 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.46749 * 179.97438 * 5 3 2 27 27 H 1.08998 * 109.47748 * 300.00335 * 5 3 2 28 28 H 1.09000 * 109.47266 * 60.00370 * 5 3 2 29 29 H 0.96993 * 119.99789 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6340 2.4267 1.2492 5 6 1.6341 2.4266 -1.2493 6 6 3.7195 1.9374 -0.0006 7 7 4.3681 3.0791 -0.0003 8 7 5.6366 2.8691 -0.0005 9 6 5.8665 1.5589 -0.0015 10 6 7.1184 0.9292 -0.0015 11 1 7.1826 -0.1449 0.0907 12 6 8.2878 1.6939 -0.1215 13 7 8.2189 2.9990 -0.1150 14 14 9.9443 0.8470 -0.2905 15 1 10.2960 0.7304 -1.7285 16 1 10.9822 1.6455 0.4098 17 1 9.8712 -0.5080 0.3127 18 7 4.6344 0.9406 0.0043 19 1 4.4592 -0.0134 0.0093 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.5510 2.3039 1.2492 24 1 2.0529 1.9571 2.1392 25 1 1.8788 3.4888 1.2490 26 1 1.8789 3.4888 -1.2490 27 1 2.0529 1.9570 -2.1393 28 1 0.5510 2.3038 -1.2493 29 1 9.0277 3.5278 -0.1984 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307491621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:39 Heat of formation + Delta-G solvation = 32.910545 kcal Electronic energy + Delta-G solvation = -13688.984486 eV Core-core repulsion = 11352.221820 eV Total energy + Delta-G solvation = -2336.762665 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.75507 -36.72391 -35.40369 -33.78906 -30.95823 -29.51161 -28.35443 -27.38369 -23.98159 -22.86736 -21.27564 -19.20063 -18.26922 -17.17062 -16.37542 -16.07882 -15.70319 -15.47364 -14.83891 -14.64160 -14.18342 -13.70309 -13.33751 -13.09893 -12.94559 -12.86102 -12.80874 -12.50057 -12.37216 -11.95819 -11.65232 -11.28697 -10.98676 -10.81152 -10.33318 -9.62343 -8.75408 -8.51799 -6.61236 0.55675 1.29092 1.42320 1.58534 1.59447 1.71498 2.20403 2.51195 2.58476 3.35819 3.59913 3.92081 4.04334 4.34779 4.41317 4.60644 4.63489 4.73678 4.78340 4.94253 5.00922 5.10285 5.23151 5.24930 5.35185 5.55083 6.22771 6.32480 6.79821 7.13640 8.45193 8.75888 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.052753 B = 0.007109 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.644325 B = 3937.529358 C = 4274.719271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.304 6.304 3 C 0.083 3.917 4 C -0.128 4.128 5 C -0.128 4.128 6 C 0.111 3.889 7 N -0.332 5.332 8 N -0.390 5.390 9 C 0.309 3.691 10 C -0.485 4.485 11 H 0.097 0.903 12 C 0.031 3.969 13 N -0.789 5.789 14 Si 1.006 2.994 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.250 1.250 18 N -0.621 5.621 19 H 0.416 0.584 20 H 0.093 0.907 21 H 0.119 0.881 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 -6.750 -0.185 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.078 6.078 3 C -0.029 4.029 4 C -0.187 4.187 5 C -0.187 4.187 6 C -0.159 4.159 7 N -0.173 5.173 8 N -0.236 5.236 9 C 0.062 3.938 10 C -0.525 4.525 11 H 0.115 0.885 12 C -0.189 4.189 13 N -0.414 5.414 14 Si 0.825 3.175 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.173 1.173 18 N -0.241 5.241 19 H 0.255 0.745 20 H 0.112 0.888 21 H 0.137 0.863 22 H 0.112 0.888 23 H 0.115 0.885 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.271 -5.708 -0.180 12.635 hybrid contribution -0.111 -0.871 -0.051 0.879 sum -11.382 -6.578 -0.231 13.148 Atomic orbital electron populations 1.23569 0.89179 1.07966 1.06549 1.86808 1.12763 1.10098 1.98128 1.20693 0.87079 0.94083 1.01071 1.22026 1.01514 1.00840 0.94341 1.22025 1.01513 1.00835 0.94343 1.23616 0.92766 0.85944 1.13586 1.73882 1.01541 1.23573 1.18299 1.75490 1.04098 1.12266 1.31722 1.21973 0.86631 0.89099 0.96079 1.18674 0.87569 0.95432 1.50800 0.88486 1.26937 1.04921 0.95157 0.91928 1.70097 1.31841 1.07465 1.31992 0.84852 0.74387 0.78962 0.79278 1.18800 1.19314 1.17343 1.43876 1.06061 1.09489 1.64648 0.74495 0.88780 0.86289 0.88781 0.88464 0.93050 0.91883 0.91890 0.93059 0.88458 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.87 113.37 1.12 -0.58 15 2 S -0.30 -8.68 20.05 -56.49 -1.13 -9.82 15 3 C 0.08 2.81 0.92 -11.54 -0.01 2.80 15 4 C -0.13 -3.76 8.30 71.98 0.60 -3.16 15 5 C -0.13 -3.76 8.30 71.98 0.60 -3.16 15 6 C 0.11 5.23 6.46 137.81 0.89 6.12 15 7 N -0.33 -18.74 12.21 -49.88 -0.61 -19.35 15 8 N -0.39 -24.62 10.55 -55.14 -0.58 -25.20 15 9 C 0.31 18.11 7.72 133.51 1.03 19.14 15 10 C -0.48 -26.94 9.46 23.21 0.22 -26.72 15 11 H 0.10 4.88 7.86 -2.91 -0.02 4.86 15 12 C 0.03 1.65 5.49 85.35 0.47 2.12 15 13 N -0.79 -45.61 11.98 21.88 0.26 -45.35 15 14 Si 1.01 39.04 29.57 68.60 2.03 41.07 15 15 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 16 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 17 H -0.25 -9.08 7.11 99.48 0.71 -8.38 15 18 N -0.62 -30.73 5.99 -183.57 -1.10 -31.83 15 19 H 0.42 18.16 7.87 -92.71 -0.73 17.43 15 20 H 0.09 1.28 7.00 -2.39 -0.02 1.26 15 21 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.09 1.28 7.00 -2.39 -0.02 1.26 15 23 H 0.10 1.99 6.68 -2.39 -0.02 1.97 15 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 28 H 0.10 1.99 6.68 -2.39 -0.02 1.98 15 29 H 0.28 14.78 8.29 -92.71 -0.77 14.02 15 Total: -1.00 -73.40 260.26 4.22 -69.18 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.44 Total: 24.73 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.91 Total: -3.45 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -2.03 Total: -121.72 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.13 Total: -9.82 kcal Total: -73.40 4.22 -69.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307491621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.093 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds