Wall clock time and date at job start Mon Mar 30 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.53174 * 2 1 4 4 O 1.45420 * 109.53312 * 120.15360 * 2 1 3 5 5 C 1.45284 * 103.06579 * 92.76884 * 4 2 1 6 6 H 1.09000 * 115.83891 * 273.82770 * 5 4 2 7 7 C 1.55668 * 110.81259 * 139.99875 * 5 4 2 8 8 H 1.08995 * 110.84687 * 103.89499 * 7 5 4 9 9 C 1.50701 * 110.84136 * 340.28464 * 7 5 4 10 10 H 1.08004 * 120.00387 * 0.02562 * 9 7 5 11 11 C 1.37880 * 119.99679 * 180.02562 * 9 7 5 12 12 N 1.31507 * 120.00398 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47134 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47271 * 119.99764 * 13 11 9 16 16 H 1.48501 * 109.47223 * 239.99851 * 13 11 9 17 17 N 1.48847 * 102.27605 * 222.09095 * 7 5 4 18 18 C 1.37379 * 111.14561 * 25.42530 * 17 7 5 19 19 O 1.21289 * 126.04377 * 178.83284 * 18 17 7 20 20 C 1.45180 * 107.91085 * 358.83436 * 18 17 7 21 21 H 1.09002 * 93.53715 * 72.66759 * 20 18 17 22 22 O 1.36081 * 146.57954 * 174.73391 * 20 18 17 23 23 H 1.09001 * 109.46747 * 299.84366 * 1 2 3 24 24 H 1.08997 * 109.46799 * 59.84561 * 1 2 3 25 25 H 1.09001 * 109.46753 * 179.84463 * 1 2 3 26 26 H 1.09004 * 109.46922 * 180.15563 * 3 2 1 27 27 H 1.09005 * 109.46844 * 300.15276 * 3 2 1 28 28 H 1.09004 * 109.47624 * 60.15487 * 3 2 1 29 29 H 0.97000 * 120.00450 * 180.02562 * 12 11 9 30 30 H 0.97001 * 124.42489 * 205.44753 * 17 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 8 2.0163 -0.6884 1.1851 5 6 2.1905 -2.0547 0.7229 6 1 1.3054 -2.6891 0.7710 7 6 3.4889 -2.6774 1.3143 8 1 3.2537 -3.3703 2.1221 9 6 4.4326 -1.6014 1.7864 10 1 4.1589 -0.5614 1.6873 11 6 5.6456 -1.9449 2.3449 12 7 5.9792 -3.2112 2.4652 13 14 6.8157 -0.6112 2.9294 14 1 6.2102 0.7219 2.6818 15 1 7.0697 -0.7778 4.3830 16 1 8.0977 -0.7175 2.1875 17 7 4.0545 -3.4015 0.1433 18 6 3.6320 -2.8407 -1.0375 19 8 3.9444 -3.2034 -2.1519 20 6 2.7453 -1.7371 -0.7156 21 1 3.5569 -1.0980 -0.3677 22 8 2.0115 -0.6940 -1.1902 23 1 -0.3633 0.5114 0.8914 24 1 -0.3633 0.5162 -0.8886 25 1 -0.3633 -1.0277 -0.0028 26 1 3.1316 1.4408 -0.0028 27 1 1.6765 1.9569 -0.8887 28 1 1.6811 1.9554 0.8914 29 1 6.8323 -3.4529 2.8584 30 1 4.6441 -4.1692 0.2058 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307673929.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:09 Heat of formation + Delta-G solvation = -79.344161 kcal Electronic energy + Delta-G solvation = -16823.361820 eV Core-core repulsion = 14006.685803 eV Total energy + Delta-G solvation = -2816.676017 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94142 -40.00190 -37.41373 -36.18471 -34.42924 -33.31597 -29.65479 -28.90784 -28.40875 -26.17493 -22.61101 -22.11551 -21.57104 -19.53639 -18.45423 -17.86360 -17.24492 -16.82581 -16.38706 -15.92136 -15.72006 -14.85881 -14.76263 -14.55475 -14.20129 -13.64181 -13.45419 -13.17410 -13.04464 -12.89435 -12.85257 -12.72797 -12.55395 -11.94405 -11.84267 -11.08414 -10.89166 -10.59796 -10.35206 -9.73832 -8.30364 -6.43078 1.23770 1.34933 1.41485 1.46766 1.51285 2.26638 2.35090 2.96029 3.13219 3.30360 3.73496 3.81274 3.96943 4.00494 4.08143 4.39520 4.69589 4.72176 4.79094 4.86726 4.89735 5.09463 5.15062 5.25758 5.66137 5.82442 5.96591 6.08927 6.18248 6.72277 7.25555 7.31694 8.76741 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.012260 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.412190 B = 2283.244846 C = 2882.709260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.224 3.776 3 C -0.149 4.149 4 O -0.351 6.351 5 C 0.046 3.954 6 H 0.137 0.863 7 C 0.258 3.742 8 H 0.067 0.933 9 C -0.538 4.538 10 H 0.070 0.930 11 C 0.035 3.965 12 N -0.902 5.902 13 Si 0.953 3.047 14 H -0.269 1.269 15 H -0.273 1.273 16 H -0.286 1.286 17 N -0.697 5.697 18 C 0.578 3.422 19 O -0.583 6.583 20 C -0.029 4.029 21 H 0.039 0.961 22 O -0.342 6.342 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.269 0.731 30 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 5.532 -0.140 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.149 3.851 3 C -0.206 4.206 4 O -0.271 6.271 5 C -0.012 4.012 6 H 0.154 0.846 7 C 0.158 3.842 8 H 0.085 0.915 9 C -0.576 4.576 10 H 0.088 0.912 11 C -0.169 4.169 12 N -0.539 5.539 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.198 1.198 16 H -0.212 1.212 17 N -0.354 5.354 18 C 0.365 3.635 19 O -0.465 6.465 20 C -0.092 4.092 21 H 0.056 0.944 22 O -0.263 6.263 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.925 5.543 -0.544 10.520 hybrid contribution 1.387 0.136 0.325 1.431 sum -7.538 5.679 -0.219 9.441 Atomic orbital electron populations 1.22332 0.90375 1.04041 1.04907 1.25032 0.95184 0.91774 0.73109 1.22040 1.01569 0.92029 1.04961 1.89821 1.86876 1.19902 1.30520 1.25848 0.99321 0.85793 0.90263 0.84599 1.20036 0.87761 0.91886 0.84549 0.91541 1.21469 1.02216 0.93786 1.40161 0.91241 1.25681 0.99277 0.97375 0.94530 1.69939 1.23145 1.17060 1.43786 0.85573 0.78444 0.79877 0.78193 1.19370 1.19825 1.21241 1.47796 1.50287 1.32463 1.04885 1.18234 0.80886 0.79982 0.84427 1.90645 1.65187 1.66624 1.24081 1.21037 0.97413 0.94736 0.96046 0.94389 1.87769 1.71539 1.35841 1.31105 0.88408 0.89095 0.91707 0.93574 0.88409 0.88312 0.92209 0.74656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.14 71.98 0.66 -3.05 16 2 C 0.22 7.24 1.26 30.60 0.04 7.28 16 3 C -0.15 -4.13 9.26 71.98 0.67 -3.46 16 4 O -0.35 -13.46 8.83 -126.57 -1.12 -14.58 16 5 C 0.05 1.79 4.94 33.07 0.16 1.96 16 6 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 7 C 0.26 11.61 3.41 44.71 0.15 11.77 16 8 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 9 C -0.54 -27.11 7.36 25.60 0.19 -26.92 16 10 H 0.07 3.61 6.37 -2.91 -0.02 3.59 16 11 C 0.03 1.76 5.44 84.66 0.46 2.22 16 12 N -0.90 -46.84 13.14 21.45 0.28 -46.56 16 13 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 17 N -0.70 -31.41 5.91 -439.11 -2.59 -34.01 16 18 C 0.58 27.05 8.02 85.61 0.69 27.74 16 19 O -0.58 -30.12 18.03 -3.06 -0.06 -30.17 16 20 C -0.03 -1.25 5.02 29.77 0.15 -1.10 16 21 H 0.04 1.88 4.90 -3.26 -0.02 1.86 16 22 O -0.34 -13.43 10.70 -72.06 -0.77 -14.20 16 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 26 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 30 H 0.41 18.47 8.96 -92.71 -0.83 17.64 16 Total: -1.00 -60.30 254.91 1.26 -59.04 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.33 Total: 20.61 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 3.16 Total: 16.43 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.31 Total: -80.57 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -1.94 Total: -58.95 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -60.30 1.26 -59.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307673929.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.303 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds