Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00042 * 2 1 4 4 C 1.50698 * 109.47225 * 66.04264 * 3 2 1 5 5 H 1.07995 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99835 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99942 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99823 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47070 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.46881 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46649 * 299.99715 * 8 6 4 12 12 C 1.46897 * 111.00105 * 236.04453 * 2 1 3 13 13 C 1.50700 * 109.47169 * 293.95238 * 12 2 1 14 14 C 1.33321 * 122.71169 * 94.99806 * 13 12 2 15 15 S 1.76162 * 108.10020 * 180.02562 * 14 13 12 16 16 C 1.70963 * 90.35462 * 359.97438 * 15 14 13 17 17 N 1.38615 * 124.94992 * 179.97438 * 16 15 14 18 18 N 1.29685 * 110.10123 * 0.24714 * 16 15 14 19 19 H 1.09000 * 109.46588 * 183.96036 * 1 2 3 20 20 H 1.09000 * 109.47063 * 303.95555 * 1 2 3 21 21 H 1.08997 * 109.46933 * 63.95905 * 1 2 3 22 22 H 1.08997 * 109.47231 * 186.05171 * 3 2 1 23 23 H 1.09009 * 109.46768 * 306.04324 * 3 2 1 24 24 H 0.97003 * 120.00038 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.47177 * 173.95469 * 12 2 1 26 26 H 1.08996 * 109.47417 * 53.95266 * 12 2 1 27 27 H 1.08007 * 125.94997 * 0.02562 * 14 13 12 28 28 H 0.96991 * 119.99725 * 0.02644 * 17 16 15 29 29 H 0.97004 * 119.99644 * 179.75235 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7111 4.0023 0.6144 8 14 1.5829 4.1870 3.1381 9 1 2.1757 3.4299 4.2697 10 1 2.1140 5.5738 3.1374 11 1 0.1058 4.2232 3.2862 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9728 14 6 0.5576 -2.7646 -1.5350 15 16 0.5114 -4.4695 -1.0941 16 6 1.9532 -4.2866 -0.1936 17 7 2.5868 -5.3019 0.5057 18 7 2.3645 -3.0583 -0.2555 19 1 -0.3632 -1.0252 0.0710 20 1 -0.3633 0.5740 0.8524 21 1 -0.3633 0.4511 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9274 -0.8310 24 1 2.9857 4.9184 0.7763 25 1 3.0798 -0.6611 -1.1756 26 1 1.5612 -0.3873 -2.0627 27 1 -0.1631 -2.2498 -2.1532 28 1 2.2129 -6.1968 0.5065 29 1 3.4064 -5.1182 0.9910 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308146052.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = 53.993300 kcal Electronic energy + Delta-G solvation = -13315.425688 eV Core-core repulsion = 10979.577240 eV Total energy + Delta-G solvation = -2335.848448 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60441 -36.42270 -34.46852 -32.44953 -29.52017 -27.20907 -26.88963 -24.26173 -22.90601 -20.50688 -19.88331 -17.95803 -16.28701 -16.20978 -15.97528 -15.12446 -14.53353 -14.00892 -13.91298 -13.63247 -13.03158 -12.37960 -11.86434 -11.71120 -11.18005 -11.03259 -10.82025 -10.63047 -10.55128 -10.35708 -9.81176 -9.35304 -9.19405 -8.99593 -8.38792 -7.74361 -7.16662 -5.97867 -3.98664 1.20980 1.30613 1.94313 3.21506 3.37308 3.40706 3.44586 3.48431 4.47726 4.95119 5.22177 5.38047 5.55583 5.77122 6.03630 6.12753 6.26636 6.37614 6.46342 6.80946 6.92267 7.26781 7.34281 7.37970 7.84590 8.12821 8.24370 8.28645 8.59652 9.08433 9.64882 11.13066 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.049116 B = 0.005651 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.942860 B = 4953.943247 C = 5081.505030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.194 3.806 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.123 3.877 13 C 0.142 3.858 14 C -0.295 4.295 15 S 0.061 5.939 16 C 0.316 3.684 17 N -0.824 5.824 18 N -0.525 5.525 19 H 0.046 0.954 20 H 0.074 0.926 21 H 0.011 0.989 22 H 0.032 0.968 23 H -0.008 1.008 24 H 0.261 0.739 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.171 0.829 28 H 0.411 0.589 29 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -17.332 -3.908 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.256 5.256 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.008 4.008 13 C 0.011 3.989 14 C -0.436 4.436 15 S 0.307 5.693 16 C -0.058 4.058 17 N -0.376 5.376 18 N -0.250 5.250 19 H 0.064 0.936 20 H 0.092 0.908 21 H 0.029 0.971 22 H 0.050 0.950 23 H 0.010 0.990 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.188 0.812 28 H 0.241 0.759 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.458 -18.016 -3.448 18.666 hybrid contribution -0.088 1.479 0.238 1.501 sum -3.546 -16.537 -3.210 17.215 Atomic orbital electron populations 1.22265 0.88900 0.99685 1.00444 1.62038 1.06944 1.17562 1.39039 1.19754 0.95527 0.81095 0.96712 1.21119 1.34777 0.96814 1.01675 0.91935 1.24980 0.95348 0.97318 0.96976 1.69950 1.38448 1.11472 1.34077 0.86550 0.78649 0.78275 0.83871 1.20176 1.21377 1.20321 1.20617 1.01180 0.85731 0.93283 1.19942 0.90199 0.96613 0.92119 1.26199 1.06762 0.94713 1.15940 1.83638 1.24658 1.11582 1.49463 1.23561 0.94581 0.90979 0.96654 1.41463 1.30587 1.08615 1.56976 1.66229 1.34502 0.99623 1.24683 0.93565 0.90755 0.97069 0.95034 0.98989 0.92904 0.89655 0.94029 0.81176 0.75924 0.75737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.07 60.07 0.54 1.28 15 2 N -0.53 -12.23 4.74 -245.82 -1.17 -13.39 15 3 C 0.19 5.22 4.72 -4.97 -0.02 5.20 15 4 C -0.51 -14.62 8.46 -34.44 -0.29 -14.91 15 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 15 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 15 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 15 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 12 C 0.12 2.41 5.40 -4.98 -0.03 2.39 15 13 C 0.14 2.52 5.57 -84.18 -0.47 2.05 15 14 C -0.29 -4.38 9.85 29.02 0.29 -4.09 15 15 S 0.06 0.74 23.22 -107.50 -2.50 -1.75 15 16 C 0.32 4.43 8.58 -87.68 -0.75 3.67 15 17 N -0.82 -7.97 9.08 29.77 0.27 -7.70 15 18 N -0.53 -9.37 10.59 -11.36 -0.12 -9.49 15 19 H 0.05 0.86 6.47 -51.93 -0.34 0.52 15 20 H 0.07 1.63 6.76 -51.93 -0.35 1.28 15 21 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 22 H 0.03 0.90 7.93 -51.93 -0.41 0.49 15 23 H -0.01 -0.22 8.12 -51.92 -0.42 -0.64 15 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 25 H 0.09 1.72 7.93 -51.93 -0.41 1.31 15 26 H 0.04 0.75 8.08 -51.93 -0.42 0.33 15 27 H 0.17 2.23 8.06 -52.48 -0.42 1.80 15 28 H 0.41 2.59 8.95 -40.82 -0.37 2.22 15 29 H 0.41 3.70 8.95 -40.82 -0.37 3.34 15 LS Contribution 263.71 15.07 3.97 3.97 Total: -1.00 -32.73 263.71 -8.09 -40.82 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.44 Total: -0.19 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.83 Total: -2.92 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.28 Total: -57.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.73 -8.09 -40.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308146052.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.817 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds