Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00042 * 2 1 4 4 C 1.50698 * 109.47225 * 66.04264 * 3 2 1 5 5 H 1.07995 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99835 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99942 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99823 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47070 * 60.00098 * 8 6 4 10 10 H 1.48497 * 109.46881 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46649 * 299.99715 * 8 6 4 12 12 C 1.46897 * 111.00105 * 236.04453 * 2 1 3 13 13 C 1.50700 * 109.47169 * 293.95238 * 12 2 1 14 14 C 1.33321 * 122.71169 * 94.99806 * 13 12 2 15 15 S 1.76162 * 108.10020 * 180.02562 * 14 13 12 16 16 C 1.70963 * 90.35462 * 359.97438 * 15 14 13 17 17 N 1.38615 * 124.94992 * 179.97438 * 16 15 14 18 18 N 1.29685 * 110.10123 * 0.24714 * 16 15 14 19 19 H 1.09000 * 109.46588 * 183.96036 * 1 2 3 20 20 H 1.09000 * 109.47063 * 303.95555 * 1 2 3 21 21 H 1.08997 * 109.46933 * 63.95905 * 1 2 3 22 22 H 1.08997 * 109.47231 * 186.05171 * 3 2 1 23 23 H 1.09009 * 109.46768 * 306.04324 * 3 2 1 24 24 H 0.97003 * 120.00038 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.47177 * 173.95469 * 12 2 1 26 26 H 1.08996 * 109.47417 * 53.95266 * 12 2 1 27 27 H 1.08007 * 125.94997 * 0.02562 * 14 13 12 28 28 H 0.96991 * 119.99725 * 0.02644 * 17 16 15 29 29 H 0.97004 * 119.99644 * 179.75235 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7111 4.0023 0.6144 8 14 1.5829 4.1870 3.1381 9 1 2.1757 3.4299 4.2697 10 1 2.1140 5.5738 3.1374 11 1 0.1058 4.2232 3.2862 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9728 14 6 0.5576 -2.7646 -1.5350 15 16 0.5114 -4.4695 -1.0941 16 6 1.9532 -4.2866 -0.1936 17 7 2.5868 -5.3019 0.5057 18 7 2.3645 -3.0583 -0.2555 19 1 -0.3632 -1.0252 0.0710 20 1 -0.3633 0.5740 0.8524 21 1 -0.3633 0.4511 -0.9233 22 1 3.0797 1.3444 -0.1083 23 1 1.5611 1.9274 -0.8310 24 1 2.9857 4.9184 0.7763 25 1 3.0798 -0.6611 -1.1756 26 1 1.5612 -0.3873 -2.0627 27 1 -0.1631 -2.2498 -2.1532 28 1 2.2129 -6.1968 0.5065 29 1 3.4064 -5.1182 0.9910 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308146052.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = 28.896199 kcal Electronic energy + Delta-G solvation = -13316.513980 eV Core-core repulsion = 10979.577240 eV Total energy + Delta-G solvation = -2336.936740 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81193 -38.09838 -35.59505 -34.54995 -30.92875 -29.01672 -28.51222 -25.95697 -24.32626 -22.32091 -21.05009 -19.13338 -18.39782 -17.26078 -16.97265 -16.87979 -16.24679 -15.67262 -15.46061 -15.17777 -14.38835 -13.94347 -13.63282 -13.43653 -12.95279 -12.81279 -12.60790 -12.33464 -12.21185 -11.77441 -11.67350 -11.31346 -10.60775 -10.46892 -10.07090 -9.03528 -8.73335 -8.19444 -6.29849 0.10268 0.28234 0.83011 1.40946 1.44876 1.52732 1.98312 2.41871 2.57928 3.12470 3.50576 3.77137 4.31220 4.44985 4.51279 4.66428 4.71638 4.83267 5.06860 5.14510 5.18211 5.29357 5.64403 6.04100 6.07654 6.32338 6.46129 6.60681 6.85142 7.24082 7.39298 8.91344 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.049116 B = 0.005651 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.942860 B = 4953.943247 C = 5081.505030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.126 3.874 13 C 0.116 3.884 14 C -0.300 4.300 15 S 0.141 5.859 16 C 0.302 3.698 17 N -0.805 5.805 18 N -0.576 5.576 19 H 0.070 0.930 20 H 0.056 0.944 21 H 0.019 0.981 22 H 0.002 0.998 23 H -0.030 1.030 24 H 0.265 0.735 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.187 0.813 28 H 0.428 0.572 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -19.004 -3.302 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.269 5.269 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.191 1.191 12 C -0.004 4.004 13 C -0.015 4.015 14 C -0.442 4.442 15 S 0.387 5.613 16 C -0.071 4.071 17 N -0.360 5.360 18 N -0.303 5.303 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.038 0.962 22 H 0.020 0.980 23 H -0.012 1.012 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.204 0.796 28 H 0.261 0.739 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.859 -19.761 -2.838 20.546 hybrid contribution 0.345 1.841 -0.005 1.873 sum -4.514 -17.920 -2.844 18.697 Atomic orbital electron populations 1.22198 0.87341 1.00892 1.00037 1.61921 1.08432 1.15217 1.41320 1.19391 0.93636 0.83275 0.95364 1.21409 1.35088 0.97503 1.02325 0.92169 1.25917 0.94951 0.97943 1.00788 1.70078 1.39235 1.11920 1.36195 0.85416 0.78900 0.77151 0.79018 1.19583 1.20600 1.19068 1.20516 0.99991 0.87409 0.92527 1.19550 0.91933 0.95510 0.94477 1.26470 1.05805 0.97016 1.14878 1.83324 1.22195 1.08265 1.47490 1.23876 0.95669 0.90759 0.96832 1.41524 1.30318 1.08576 1.55549 1.66144 1.36271 1.01312 1.26559 0.91164 0.92543 0.96208 0.98001 1.01250 0.92603 0.91596 0.92841 0.79614 0.73858 0.75298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.78 9.07 127.69 1.16 2.94 15 2 N -0.54 -25.62 4.74 -931.64 -4.42 -30.04 15 3 C 0.21 11.75 4.72 85.56 0.40 12.15 15 4 C -0.53 -31.02 8.46 25.60 0.22 -30.81 15 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 15 6 C 0.00 0.12 5.46 84.66 0.46 0.58 15 7 N -0.93 -57.48 13.29 21.45 0.28 -57.19 15 8 Si 0.97 45.42 29.54 68.60 2.03 47.44 15 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 12 C 0.13 5.07 5.40 85.56 0.46 5.54 15 13 C 0.12 4.06 5.57 41.40 0.23 4.29 15 14 C -0.30 -8.27 9.85 66.71 0.66 -7.61 15 15 S 0.14 2.98 23.22 -56.49 -1.31 1.67 15 16 C 0.30 7.86 8.58 179.32 1.54 9.40 15 17 N -0.81 -13.71 9.08 -59.73 -0.54 -14.25 15 18 N -0.58 -20.20 10.59 -189.86 -2.01 -22.21 15 19 H 0.07 2.51 6.47 -2.39 -0.02 2.50 15 20 H 0.06 2.48 6.76 -2.39 -0.02 2.47 15 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 22 H 0.00 0.11 7.93 -2.39 -0.02 0.10 15 23 H -0.03 -1.78 8.12 -2.38 -0.02 -1.80 15 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 25 H 0.07 2.82 7.93 -2.38 -0.02 2.80 15 26 H 0.05 1.97 8.08 -2.39 -0.02 1.95 15 27 H 0.19 4.37 8.06 -2.91 -0.02 4.34 15 28 H 0.43 4.07 8.95 -92.71 -0.83 3.24 15 29 H 0.41 6.74 8.95 -92.71 -0.83 5.91 15 Total: -1.00 -71.33 263.71 -1.33 -72.66 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -0.48 Total: 5.44 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.13 Total: -3.52 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -6.69 Total: -123.69 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.31 Total: 1.67 kcal Total: -71.33 -1.33 -72.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308146052.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.556 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds