Wall clock time and date at job start Mon Mar 30 2020 02:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47190 * 2 1 4 4 N 1.29417 * 125.69706 * 90.01611 * 3 2 1 5 5 N 1.26402 * 116.47439 * 179.97438 * 4 3 2 6 6 C 1.29411 * 116.47539 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.69719 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47160 * 90.02815 * 7 6 5 9 9 C 1.46500 * 119.99706 * 270.00409 * 8 7 6 10 10 C 1.36931 * 119.99927 * 90.00012 * 8 7 6 11 11 H 1.07998 * 120.00558 * 342.19882 * 10 8 7 12 12 C 1.38819 * 119.99821 * 162.47119 * 10 8 7 13 13 N 1.31609 * 120.00052 * 344.98650 * 12 10 8 14 14 Si 1.86807 * 119.99703 * 164.98209 * 12 10 8 15 15 H 1.48501 * 109.47239 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47010 * 120.00488 * 14 12 10 17 17 H 1.48503 * 109.46805 * 240.00065 * 14 12 10 18 18 S 1.71219 * 108.60892 * 0.22874 * 6 5 4 19 19 H 1.08994 * 109.47027 * 300.00323 * 1 2 3 20 20 H 1.08998 * 109.46655 * 60.00626 * 1 2 3 21 21 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47547 * 239.99758 * 2 1 3 23 23 H 1.08998 * 109.46655 * 119.99374 * 2 1 3 24 24 H 1.08997 * 109.47107 * 330.03291 * 7 6 5 25 25 H 1.09001 * 109.47768 * 210.02645 * 7 6 5 26 26 H 1.08999 * 109.47059 * 264.95414 * 9 8 7 27 27 H 1.08995 * 109.47278 * 24.95631 * 9 8 7 28 28 H 1.08999 * 109.47085 * 144.95791 * 9 8 7 29 29 H 0.97003 * 120.00168 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2844 2.1327 1.0510 5 7 2.7007 3.3088 0.8484 6 6 2.8283 3.6708 -0.3875 7 6 3.3047 5.0187 -0.8642 8 7 4.7613 4.9948 -1.0198 9 6 5.6242 5.3609 0.1060 10 6 5.3160 4.6303 -2.2175 11 1 4.7254 4.0935 -2.9451 12 6 6.6392 4.9457 -2.4942 13 7 7.2715 5.8348 -1.7581 14 14 7.5224 4.1081 -3.9113 15 1 6.5974 3.1568 -4.5781 16 1 7.9695 5.1315 -4.8900 17 1 8.7023 3.3706 -3.3924 18 16 2.3586 2.3651 -1.3905 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 3.0298 5.7802 -0.1345 25 1 2.8407 5.2499 -1.8231 26 1 5.8947 6.4140 0.0290 27 1 5.0926 5.1898 1.0420 28 1 6.5276 4.7514 0.0846 29 1 8.1963 6.0550 -1.9512 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308265312.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:48 Heat of formation + Delta-G solvation = 77.873325 kcal Electronic energy + Delta-G solvation = -13485.522218 eV Core-core repulsion = 11150.709285 eV Total energy + Delta-G solvation = -2334.812933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.66787 -35.94725 -34.29661 -31.89780 -29.90042 -27.36707 -25.99554 -24.91249 -23.00946 -21.38821 -19.13938 -18.67325 -16.78607 -15.51220 -15.11929 -14.80911 -14.36239 -13.67693 -13.62254 -13.15683 -12.84739 -12.51330 -11.88887 -11.78764 -11.32734 -11.25053 -10.98107 -10.86245 -10.50923 -10.14345 -10.06434 -9.89232 -9.58654 -9.15135 -9.09200 -8.68306 -7.05916 -5.88906 -3.31870 1.00664 1.49207 2.00398 3.12057 3.30395 3.37865 3.39625 4.36371 4.40029 4.94961 5.02995 5.14781 5.31994 5.40229 5.49872 5.68428 5.72184 5.87954 6.01604 6.12733 6.25921 6.37191 6.77106 7.34942 7.59300 7.70717 8.17809 9.03968 9.14172 9.65697 10.11455 11.15432 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.007803 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.618377 B = 3587.448994 C = 4035.119372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.047 4.047 4 N -0.266 5.266 5 N -0.280 5.280 6 C 0.008 3.992 7 C 0.217 3.783 8 N -0.579 5.579 9 C 0.158 3.842 10 C -0.270 4.270 11 H 0.074 0.926 12 C 0.009 3.991 13 N -0.898 5.898 14 Si 0.906 3.094 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.287 1.287 18 S 0.144 5.856 19 H 0.060 0.940 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 -8.188 -0.078 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.327 4.327 4 N -0.103 5.103 5 N -0.117 5.117 6 C -0.275 4.275 7 C 0.083 3.917 8 N -0.299 5.299 9 C 0.013 3.987 10 C -0.399 4.399 11 H 0.092 0.908 12 C -0.190 4.190 13 N -0.541 5.541 14 Si 0.735 3.265 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.214 1.214 18 S 0.387 5.613 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.066 0.934 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.575 -7.997 0.273 13.262 hybrid contribution 0.799 -0.546 -0.600 1.138 sum -9.777 -8.543 -0.327 12.987 Atomic orbital electron populations 1.21764 0.93785 1.02212 1.02637 1.20004 0.96403 0.87393 1.04008 1.28990 1.06736 1.04077 0.92888 1.71324 1.12342 0.99348 1.27330 1.71375 1.15524 1.07115 1.17719 1.31847 0.98624 1.05234 0.91800 1.19467 0.86366 0.86226 0.99666 1.44064 0.98227 1.76955 1.10633 1.20946 0.92787 0.99711 0.85222 1.19281 0.95730 1.31084 0.93800 0.90798 1.24945 0.97849 0.97586 0.98666 1.70130 1.11476 1.31619 1.40882 0.86174 0.79769 0.79085 0.81476 1.20033 1.21416 1.21386 1.83684 1.57383 1.06989 1.13280 0.92056 0.92400 0.91589 0.89815 0.89134 0.90435 0.90550 0.94556 0.97401 0.93368 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.90 37.16 0.37 -1.04 15 2 C -0.04 -0.43 6.54 -27.88 -0.18 -0.61 15 3 C -0.05 -0.77 6.78 -13.30 -0.09 -0.86 15 4 N -0.27 -5.26 11.66 32.58 0.38 -4.88 15 5 N -0.28 -5.97 11.66 32.58 0.38 -5.59 15 6 C 0.01 0.16 7.11 -13.30 -0.09 0.06 15 7 C 0.22 4.45 6.24 -5.19 -0.03 4.42 15 8 N -0.58 -14.43 2.91 -182.50 -0.53 -14.96 15 9 C 0.16 3.98 8.97 59.85 0.54 4.51 15 10 C -0.27 -7.16 9.70 -15.06 -0.15 -7.31 15 11 H 0.07 1.89 7.87 -52.49 -0.41 1.47 15 12 C 0.01 0.25 5.08 -17.43 -0.09 0.16 15 13 N -0.90 -25.56 10.51 55.49 0.58 -24.98 15 14 Si 0.91 21.27 29.58 -169.99 -5.03 16.24 15 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 18 S 0.14 2.41 23.04 -107.50 -2.48 -0.07 15 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.07 0.49 8.14 -51.93 -0.42 0.06 15 22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.08 1.50 8.07 -51.93 -0.42 1.08 15 25 H 0.08 1.44 8.04 -51.93 -0.42 1.02 15 26 H 0.04 0.95 7.48 -51.93 -0.39 0.57 15 27 H 0.01 0.17 8.03 -51.93 -0.42 -0.24 15 28 H 0.05 1.31 7.01 -51.93 -0.36 0.95 15 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 266.52 15.07 4.02 4.02 Total: -1.00 -30.50 266.52 -6.08 -36.57 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -3.67 Total: -5.70 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 0.27 Total: -0.66 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.81 Total: -50.41 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.48 Total: -0.07 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.50 -6.08 -36.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308265312.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.448 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds