Wall clock time and date at job start Mon Mar 30 2020 02:59:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50701 * 109.47190 * 2 1
4 4 N 1.29417 * 125.69706 * 90.01611 * 3 2 1
5 5 N 1.26402 * 116.47439 * 179.97438 * 4 3 2
6 6 C 1.29411 * 116.47539 * 0.02562 * 5 4 3
7 7 C 1.50698 * 125.69719 * 179.97438 * 6 5 4
8 8 N 1.46503 * 109.47160 * 90.02815 * 7 6 5
9 9 C 1.46500 * 119.99706 * 270.00409 * 8 7 6
10 10 C 1.36931 * 119.99927 * 90.00012 * 8 7 6
11 11 H 1.07998 * 120.00558 * 342.19882 * 10 8 7
12 12 C 1.38819 * 119.99821 * 162.47119 * 10 8 7
13 13 N 1.31609 * 120.00052 * 344.98650 * 12 10 8
14 14 Si 1.86807 * 119.99703 * 164.98209 * 12 10 8
15 15 H 1.48501 * 109.47239 * 0.02562 * 14 12 10
16 16 H 1.48499 * 109.47010 * 120.00488 * 14 12 10
17 17 H 1.48503 * 109.46805 * 240.00065 * 14 12 10
18 18 S 1.71219 * 108.60892 * 0.22874 * 6 5 4
19 19 H 1.08994 * 109.47027 * 300.00323 * 1 2 3
20 20 H 1.08998 * 109.46655 * 60.00626 * 1 2 3
21 21 H 1.08998 * 109.46899 * 180.02562 * 1 2 3
22 22 H 1.08994 * 109.47547 * 239.99758 * 2 1 3
23 23 H 1.08998 * 109.46655 * 119.99374 * 2 1 3
24 24 H 1.08997 * 109.47107 * 330.03291 * 7 6 5
25 25 H 1.09001 * 109.47768 * 210.02645 * 7 6 5
26 26 H 1.08999 * 109.47059 * 264.95414 * 9 8 7
27 27 H 1.08995 * 109.47278 * 24.95631 * 9 8 7
28 28 H 1.08999 * 109.47085 * 144.95791 * 9 8 7
29 29 H 0.97003 * 120.00168 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2844 2.1327 1.0510
5 7 2.7007 3.3088 0.8484
6 6 2.8283 3.6708 -0.3875
7 6 3.3047 5.0187 -0.8642
8 7 4.7613 4.9948 -1.0198
9 6 5.6242 5.3609 0.1060
10 6 5.3160 4.6303 -2.2175
11 1 4.7254 4.0935 -2.9451
12 6 6.6392 4.9457 -2.4942
13 7 7.2715 5.8348 -1.7581
14 14 7.5224 4.1081 -3.9113
15 1 6.5974 3.1568 -4.5781
16 1 7.9695 5.1315 -4.8900
17 1 8.7023 3.3706 -3.3924
18 16 2.3586 2.3651 -1.3905
19 1 -0.3633 0.5139 0.8899
20 1 -0.3632 0.5137 -0.8900
21 1 -0.3633 -1.0277 0.0005
22 1 1.8934 -0.5138 -0.8899
23 1 1.8933 -0.5137 0.8900
24 1 3.0298 5.7802 -0.1345
25 1 2.8407 5.2499 -1.8231
26 1 5.8947 6.4140 0.0290
27 1 5.0926 5.1898 1.0420
28 1 6.5276 4.7514 0.0846
29 1 8.1963 6.0550 -1.9512
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308265312.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:48
Heat of formation + Delta-G solvation = 77.873325 kcal
Electronic energy + Delta-G solvation = -13485.522218 eV
Core-core repulsion = 11150.709285 eV
Total energy + Delta-G solvation = -2334.812933 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.66787 -35.94725 -34.29661 -31.89780 -29.90042 -27.36707 -25.99554 -24.91249
-23.00946 -21.38821 -19.13938 -18.67325 -16.78607 -15.51220 -15.11929 -14.80911
-14.36239 -13.67693 -13.62254 -13.15683 -12.84739 -12.51330 -11.88887 -11.78764
-11.32734 -11.25053 -10.98107 -10.86245 -10.50923 -10.14345 -10.06434 -9.89232
-9.58654 -9.15135 -9.09200 -8.68306 -7.05916 -5.88906 -3.31870 1.00664
1.49207 2.00398 3.12057 3.30395 3.37865 3.39625 4.36371 4.40029
4.94961 5.02995 5.14781 5.31994 5.40229 5.49872 5.68428 5.72184
5.87954 6.01604 6.12733 6.25921 6.37191 6.77106 7.34942 7.59300
7.70717 8.17809 9.03968 9.14172 9.65697 10.11455 11.15432
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.037848 B = 0.007803 C = 0.006937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.618377 B = 3587.448994 C = 4035.119372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.037 4.037
3 C -0.047 4.047
4 N -0.266 5.266
5 N -0.280 5.280
6 C 0.008 3.992
7 C 0.217 3.783
8 N -0.579 5.579
9 C 0.158 3.842
10 C -0.270 4.270
11 H 0.074 0.926
12 C 0.009 3.991
13 N -0.898 5.898
14 Si 0.906 3.094
15 H -0.275 1.275
16 H -0.287 1.287
17 H -0.287 1.287
18 S 0.144 5.856
19 H 0.060 0.940
20 H 0.057 0.943
21 H 0.065 0.935
22 H 0.083 0.917
23 H 0.090 0.910
24 H 0.078 0.922
25 H 0.076 0.924
26 H 0.036 0.964
27 H 0.007 0.993
28 H 0.048 0.952
29 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.842 -8.188 -0.078 13.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.078 4.078
3 C -0.327 4.327
4 N -0.103 5.103
5 N -0.117 5.117
6 C -0.275 4.275
7 C 0.083 3.917
8 N -0.299 5.299
9 C 0.013 3.987
10 C -0.399 4.399
11 H 0.092 0.908
12 C -0.190 4.190
13 N -0.541 5.541
14 Si 0.735 3.265
15 H -0.200 1.200
16 H -0.214 1.214
17 H -0.214 1.214
18 S 0.387 5.613
19 H 0.079 0.921
20 H 0.076 0.924
21 H 0.084 0.916
22 H 0.102 0.898
23 H 0.109 0.891
24 H 0.096 0.904
25 H 0.095 0.905
26 H 0.054 0.946
27 H 0.026 0.974
28 H 0.066 0.934
29 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -10.575 -7.997 0.273 13.262
hybrid contribution 0.799 -0.546 -0.600 1.138
sum -9.777 -8.543 -0.327 12.987
Atomic orbital electron populations
1.21764 0.93785 1.02212 1.02637 1.20004 0.96403 0.87393 1.04008
1.28990 1.06736 1.04077 0.92888 1.71324 1.12342 0.99348 1.27330
1.71375 1.15524 1.07115 1.17719 1.31847 0.98624 1.05234 0.91800
1.19467 0.86366 0.86226 0.99666 1.44064 0.98227 1.76955 1.10633
1.20946 0.92787 0.99711 0.85222 1.19281 0.95730 1.31084 0.93800
0.90798 1.24945 0.97849 0.97586 0.98666 1.70130 1.11476 1.31619
1.40882 0.86174 0.79769 0.79085 0.81476 1.20033 1.21416 1.21386
1.83684 1.57383 1.06989 1.13280 0.92056 0.92400 0.91589 0.89815
0.89134 0.90435 0.90550 0.94556 0.97401 0.93368 0.93421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.41 9.90 37.16 0.37 -1.04 15
2 C -0.04 -0.43 6.54 -27.88 -0.18 -0.61 15
3 C -0.05 -0.77 6.78 -13.30 -0.09 -0.86 15
4 N -0.27 -5.26 11.66 32.58 0.38 -4.88 15
5 N -0.28 -5.97 11.66 32.58 0.38 -5.59 15
6 C 0.01 0.16 7.11 -13.30 -0.09 0.06 15
7 C 0.22 4.45 6.24 -5.19 -0.03 4.42 15
8 N -0.58 -14.43 2.91 -182.50 -0.53 -14.96 15
9 C 0.16 3.98 8.97 59.85 0.54 4.51 15
10 C -0.27 -7.16 9.70 -15.06 -0.15 -7.31 15
11 H 0.07 1.89 7.87 -52.49 -0.41 1.47 15
12 C 0.01 0.25 5.08 -17.43 -0.09 0.16 15
13 N -0.90 -25.56 10.51 55.49 0.58 -24.98 15
14 Si 0.91 21.27 29.58 -169.99 -5.03 16.24 15
15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15
16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15
17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15
18 S 0.14 2.41 23.04 -107.50 -2.48 -0.07 15
19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15
20 H 0.06 0.55 8.14 -51.93 -0.42 0.12 15
21 H 0.07 0.49 8.14 -51.93 -0.42 0.06 15
22 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15
23 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15
24 H 0.08 1.50 8.07 -51.93 -0.42 1.08 15
25 H 0.08 1.44 8.04 -51.93 -0.42 1.02 15
26 H 0.04 0.95 7.48 -51.93 -0.39 0.57 15
27 H 0.01 0.17 8.03 -51.93 -0.42 -0.24 15
28 H 0.05 1.31 7.01 -51.93 -0.36 0.95 15
29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15
LS Contribution 266.52 15.07 4.02 4.02
Total: -1.00 -30.50 266.52 -6.08 -36.57
By element:
Atomic # 1 Polarization: -2.04 SS G_CDS: -3.67 Total: -5.70 kcal
Atomic # 6 Polarization: -0.93 SS G_CDS: 0.27 Total: -0.66 kcal
Atomic # 7 Polarization: -51.22 SS G_CDS: 0.81 Total: -50.41 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal
Atomic # 16 Polarization: 2.41 SS G_CDS: -2.48 Total: -0.07 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -30.50 -6.08 -36.57 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308265312.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.448 kcal
(2) G-P(sol) polarization free energy of solvation -30.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds