Wall clock time and date at job start Mon Mar 30 2020 02:59:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50701 * 109.47190 * 2 1
4 4 N 1.29417 * 125.69706 * 90.01611 * 3 2 1
5 5 N 1.26402 * 116.47439 * 179.97438 * 4 3 2
6 6 C 1.29411 * 116.47539 * 0.02562 * 5 4 3
7 7 C 1.50698 * 125.69719 * 179.97438 * 6 5 4
8 8 N 1.46503 * 109.47160 * 90.02815 * 7 6 5
9 9 C 1.46500 * 119.99706 * 270.00409 * 8 7 6
10 10 C 1.36931 * 119.99927 * 90.00012 * 8 7 6
11 11 H 1.07998 * 120.00558 * 342.19882 * 10 8 7
12 12 C 1.38819 * 119.99821 * 162.47119 * 10 8 7
13 13 N 1.31609 * 120.00052 * 344.98650 * 12 10 8
14 14 Si 1.86807 * 119.99703 * 164.98209 * 12 10 8
15 15 H 1.48501 * 109.47239 * 0.02562 * 14 12 10
16 16 H 1.48499 * 109.47010 * 120.00488 * 14 12 10
17 17 H 1.48503 * 109.46805 * 240.00065 * 14 12 10
18 18 S 1.71219 * 108.60892 * 0.22874 * 6 5 4
19 19 H 1.08994 * 109.47027 * 300.00323 * 1 2 3
20 20 H 1.08998 * 109.46655 * 60.00626 * 1 2 3
21 21 H 1.08998 * 109.46899 * 180.02562 * 1 2 3
22 22 H 1.08994 * 109.47547 * 239.99758 * 2 1 3
23 23 H 1.08998 * 109.46655 * 119.99374 * 2 1 3
24 24 H 1.08997 * 109.47107 * 330.03291 * 7 6 5
25 25 H 1.09001 * 109.47768 * 210.02645 * 7 6 5
26 26 H 1.08999 * 109.47059 * 264.95414 * 9 8 7
27 27 H 1.08995 * 109.47278 * 24.95631 * 9 8 7
28 28 H 1.08999 * 109.47085 * 144.95791 * 9 8 7
29 29 H 0.97003 * 120.00168 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2844 2.1327 1.0510
5 7 2.7007 3.3088 0.8484
6 6 2.8283 3.6708 -0.3875
7 6 3.3047 5.0187 -0.8642
8 7 4.7613 4.9948 -1.0198
9 6 5.6242 5.3609 0.1060
10 6 5.3160 4.6303 -2.2175
11 1 4.7254 4.0935 -2.9451
12 6 6.6392 4.9457 -2.4942
13 7 7.2715 5.8348 -1.7581
14 14 7.5224 4.1081 -3.9113
15 1 6.5974 3.1568 -4.5781
16 1 7.9695 5.1315 -4.8900
17 1 8.7023 3.3706 -3.3924
18 16 2.3586 2.3651 -1.3905
19 1 -0.3633 0.5139 0.8899
20 1 -0.3632 0.5137 -0.8900
21 1 -0.3633 -1.0277 0.0005
22 1 1.8934 -0.5138 -0.8899
23 1 1.8933 -0.5137 0.8900
24 1 3.0298 5.7802 -0.1345
25 1 2.8407 5.2499 -1.8231
26 1 5.8947 6.4140 0.0290
27 1 5.0926 5.1898 1.0420
28 1 6.5276 4.7514 0.0846
29 1 8.1963 6.0550 -1.9512
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308265312.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:47
Heat of formation + Delta-G solvation = 58.186975 kcal
Electronic energy + Delta-G solvation = -13486.375882 eV
Core-core repulsion = 11150.709285 eV
Total energy + Delta-G solvation = -2335.666597 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-42.15235 -37.77140 -35.44278 -33.68840 -31.48280 -28.89068 -27.96891 -26.41156
-24.20339 -23.18304 -20.58994 -20.11770 -18.70715 -17.22342 -16.51706 -16.46387
-15.50832 -15.45509 -15.12587 -14.70868 -14.31786 -13.64526 -13.57572 -13.19045
-12.86478 -12.73627 -12.59790 -12.38843 -12.13806 -12.06151 -11.94108 -11.34398
-11.02796 -10.76067 -10.54017 -10.51375 -9.04364 -7.90496 -5.37451 -0.40368
0.11127 0.55723 1.45774 1.47947 1.57782 1.63948 2.47570 3.10061
3.28825 3.61592 3.74087 4.00476 4.27377 4.29772 4.45053 4.65663
4.74734 4.78387 4.84453 4.98121 5.08021 5.27423 5.31222 5.53974
5.63889 6.18718 7.02675 7.67678 7.70686 8.15072 9.14076
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.037848 B = 0.007803 C = 0.006937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 739.618377 B = 3587.448994 C = 4035.119372
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.042 4.042
3 C -0.031 4.031
4 N -0.302 5.302
5 N -0.303 5.303
6 C -0.023 4.023
7 C 0.219 3.781
8 N -0.600 5.600
9 C 0.179 3.821
10 C -0.271 4.271
11 H 0.084 0.916
12 C -0.049 4.049
13 N -0.934 5.934
14 Si 0.968 3.032
15 H -0.259 1.259
16 H -0.289 1.289
17 H -0.295 1.295
18 S 0.198 5.802
19 H 0.047 0.953
20 H 0.060 0.940
21 H 0.095 0.905
22 H 0.109 0.891
23 H 0.098 0.902
24 H 0.082 0.918
25 H 0.093 0.907
26 H 0.016 0.984
27 H 0.019 0.981
28 H 0.019 0.981
29 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.438 -10.391 -1.262 16.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.083 4.083
3 C -0.311 4.311
4 N -0.139 5.139
5 N -0.141 5.141
6 C -0.306 4.306
7 C 0.087 3.913
8 N -0.321 5.321
9 C 0.034 3.966
10 C -0.400 4.400
11 H 0.102 0.898
12 C -0.244 4.244
13 N -0.580 5.580
14 Si 0.795 3.205
15 H -0.183 1.183
16 H -0.215 1.215
17 H -0.222 1.222
18 S 0.442 5.558
19 H 0.066 0.934
20 H 0.079 0.921
21 H 0.114 0.886
22 H 0.128 0.872
23 H 0.117 0.883
24 H 0.100 0.900
25 H 0.112 0.888
26 H 0.035 0.965
27 H 0.038 0.962
28 H 0.038 0.962
29 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -12.226 -10.220 -0.915 15.961
hybrid contribution 1.088 0.015 -0.205 1.107
sum -11.138 -10.205 -1.120 15.148
Atomic orbital electron populations
1.21764 0.91951 1.04097 1.02160 1.20365 0.97820 0.84422 1.05680
1.29843 1.03783 1.05418 0.92012 1.71310 1.14441 0.99437 1.28693
1.71343 1.15747 1.08250 1.18766 1.31175 1.00679 1.06253 0.92468
1.19521 0.84177 0.86892 1.00713 1.44171 0.99908 1.77984 1.10039
1.20579 0.92024 0.97819 0.86203 1.19617 0.95927 1.30114 0.94371
0.89821 1.25746 0.98858 0.98475 1.01329 1.70278 1.11379 1.33465
1.42901 0.85202 0.78437 0.78132 0.78716 1.18259 1.21549 1.22203
1.83362 1.56043 1.04844 1.11594 0.93375 0.92063 0.88587 0.87233
0.88337 0.89975 0.88850 0.96545 0.96224 0.96249 0.94034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.20 9.90 71.98 0.71 -1.49 15
2 C -0.04 -0.82 6.54 29.85 0.20 -0.62 15
3 C -0.03 -0.92 6.78 88.46 0.60 -0.32 15
4 N -0.30 -11.53 11.66 -50.84 -0.59 -12.12 15
5 N -0.30 -12.74 11.66 -50.85 -0.59 -13.33 15
6 C -0.02 -0.89 7.11 88.46 0.63 -0.26 15
7 C 0.22 8.84 6.24 85.63 0.53 9.38 15
8 N -0.60 -29.92 2.91 -731.32 -2.13 -32.06 15
9 C 0.18 9.25 8.97 127.77 1.15 10.40 15
10 C -0.27 -14.25 9.70 84.04 0.82 -13.43 15
11 H 0.08 4.13 7.87 -2.91 -0.02 4.11 15
12 C -0.05 -2.65 5.08 84.87 0.43 -2.22 15
13 N -0.93 -54.50 10.51 21.65 0.23 -54.27 15
14 Si 0.97 43.62 29.58 68.60 2.03 45.65 15
15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15
16 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15
17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15
18 S 0.20 6.10 23.04 -56.49 -1.30 4.80 15
19 H 0.05 0.89 8.14 -2.39 -0.02 0.87 15
20 H 0.06 0.92 8.14 -2.39 -0.02 0.90 15
21 H 0.10 0.98 8.14 -2.39 -0.02 0.96 15
22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15
23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15
24 H 0.08 3.17 8.07 -2.39 -0.02 3.15 15
25 H 0.09 3.39 8.04 -2.39 -0.02 3.37 15
26 H 0.02 0.89 7.48 -2.39 -0.02 0.87 15
27 H 0.02 0.93 8.03 -2.39 -0.02 0.91 15
28 H 0.02 1.07 7.01 -2.39 -0.02 1.06 15
29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 15
Total: -1.00 -65.87 266.52 3.84 -62.03
By element:
Atomic # 1 Polarization: -3.26 SS G_CDS: 1.14 Total: -2.13 kcal
Atomic # 6 Polarization: -3.63 SS G_CDS: 5.06 Total: 1.43 kcal
Atomic # 7 Polarization: -108.69 SS G_CDS: -3.09 Total: -111.78 kcal
Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal
Atomic # 16 Polarization: 6.10 SS G_CDS: -1.30 Total: 4.80 kcal
Total: -65.87 3.84 -62.03 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308265312.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.213 kcal
(2) G-P(sol) polarization free energy of solvation -65.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.347 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds