Wall clock time and date at job start Mon Mar 30 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47190 * 2 1 4 4 N 1.29417 * 125.69706 * 90.01611 * 3 2 1 5 5 N 1.26402 * 116.47439 * 179.97438 * 4 3 2 6 6 C 1.29411 * 116.47539 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.69719 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47160 * 90.02815 * 7 6 5 9 9 C 1.46500 * 119.99706 * 270.00409 * 8 7 6 10 10 C 1.36931 * 119.99927 * 90.00012 * 8 7 6 11 11 H 1.07998 * 120.00558 * 342.19882 * 10 8 7 12 12 C 1.38819 * 119.99821 * 162.47119 * 10 8 7 13 13 N 1.31609 * 120.00052 * 344.98650 * 12 10 8 14 14 Si 1.86807 * 119.99703 * 164.98209 * 12 10 8 15 15 H 1.48501 * 109.47239 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47010 * 120.00488 * 14 12 10 17 17 H 1.48503 * 109.46805 * 240.00065 * 14 12 10 18 18 S 1.71219 * 108.60892 * 0.22874 * 6 5 4 19 19 H 1.08994 * 109.47027 * 300.00323 * 1 2 3 20 20 H 1.08998 * 109.46655 * 60.00626 * 1 2 3 21 21 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47547 * 239.99758 * 2 1 3 23 23 H 1.08998 * 109.46655 * 119.99374 * 2 1 3 24 24 H 1.08997 * 109.47107 * 330.03291 * 7 6 5 25 25 H 1.09001 * 109.47768 * 210.02645 * 7 6 5 26 26 H 1.08999 * 109.47059 * 264.95414 * 9 8 7 27 27 H 1.08995 * 109.47278 * 24.95631 * 9 8 7 28 28 H 1.08999 * 109.47085 * 144.95791 * 9 8 7 29 29 H 0.97003 * 120.00168 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2844 2.1327 1.0510 5 7 2.7007 3.3088 0.8484 6 6 2.8283 3.6708 -0.3875 7 6 3.3047 5.0187 -0.8642 8 7 4.7613 4.9948 -1.0198 9 6 5.6242 5.3609 0.1060 10 6 5.3160 4.6303 -2.2175 11 1 4.7254 4.0935 -2.9451 12 6 6.6392 4.9457 -2.4942 13 7 7.2715 5.8348 -1.7581 14 14 7.5224 4.1081 -3.9113 15 1 6.5974 3.1568 -4.5781 16 1 7.9695 5.1315 -4.8900 17 1 8.7023 3.3706 -3.3924 18 16 2.3586 2.3651 -1.3905 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8900 24 1 3.0298 5.7802 -0.1345 25 1 2.8407 5.2499 -1.8231 26 1 5.8947 6.4140 0.0290 27 1 5.0926 5.1898 1.0420 28 1 6.5276 4.7514 0.0846 29 1 8.1963 6.0550 -1.9512 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308265312.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:47 Heat of formation + Delta-G solvation = 58.186975 kcal Electronic energy + Delta-G solvation = -13486.375882 eV Core-core repulsion = 11150.709285 eV Total energy + Delta-G solvation = -2335.666597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.15235 -37.77140 -35.44278 -33.68840 -31.48280 -28.89068 -27.96891 -26.41156 -24.20339 -23.18304 -20.58994 -20.11770 -18.70715 -17.22342 -16.51706 -16.46387 -15.50832 -15.45509 -15.12587 -14.70868 -14.31786 -13.64526 -13.57572 -13.19045 -12.86478 -12.73627 -12.59790 -12.38843 -12.13806 -12.06151 -11.94108 -11.34398 -11.02796 -10.76067 -10.54017 -10.51375 -9.04364 -7.90496 -5.37451 -0.40368 0.11127 0.55723 1.45774 1.47947 1.57782 1.63948 2.47570 3.10061 3.28825 3.61592 3.74087 4.00476 4.27377 4.29772 4.45053 4.65663 4.74734 4.78387 4.84453 4.98121 5.08021 5.27423 5.31222 5.53974 5.63889 6.18718 7.02675 7.67678 7.70686 8.15072 9.14076 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.007803 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.618377 B = 3587.448994 C = 4035.119372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.031 4.031 4 N -0.302 5.302 5 N -0.303 5.303 6 C -0.023 4.023 7 C 0.219 3.781 8 N -0.600 5.600 9 C 0.179 3.821 10 C -0.271 4.271 11 H 0.084 0.916 12 C -0.049 4.049 13 N -0.934 5.934 14 Si 0.968 3.032 15 H -0.259 1.259 16 H -0.289 1.289 17 H -0.295 1.295 18 S 0.198 5.802 19 H 0.047 0.953 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.109 0.891 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.016 0.984 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -10.391 -1.262 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.311 4.311 4 N -0.139 5.139 5 N -0.141 5.141 6 C -0.306 4.306 7 C 0.087 3.913 8 N -0.321 5.321 9 C 0.034 3.966 10 C -0.400 4.400 11 H 0.102 0.898 12 C -0.244 4.244 13 N -0.580 5.580 14 Si 0.795 3.205 15 H -0.183 1.183 16 H -0.215 1.215 17 H -0.222 1.222 18 S 0.442 5.558 19 H 0.066 0.934 20 H 0.079 0.921 21 H 0.114 0.886 22 H 0.128 0.872 23 H 0.117 0.883 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.226 -10.220 -0.915 15.961 hybrid contribution 1.088 0.015 -0.205 1.107 sum -11.138 -10.205 -1.120 15.148 Atomic orbital electron populations 1.21764 0.91951 1.04097 1.02160 1.20365 0.97820 0.84422 1.05680 1.29843 1.03783 1.05418 0.92012 1.71310 1.14441 0.99437 1.28693 1.71343 1.15747 1.08250 1.18766 1.31175 1.00679 1.06253 0.92468 1.19521 0.84177 0.86892 1.00713 1.44171 0.99908 1.77984 1.10039 1.20579 0.92024 0.97819 0.86203 1.19617 0.95927 1.30114 0.94371 0.89821 1.25746 0.98858 0.98475 1.01329 1.70278 1.11379 1.33465 1.42901 0.85202 0.78437 0.78132 0.78716 1.18259 1.21549 1.22203 1.83362 1.56043 1.04844 1.11594 0.93375 0.92063 0.88587 0.87233 0.88337 0.89975 0.88850 0.96545 0.96224 0.96249 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.90 71.98 0.71 -1.49 15 2 C -0.04 -0.82 6.54 29.85 0.20 -0.62 15 3 C -0.03 -0.92 6.78 88.46 0.60 -0.32 15 4 N -0.30 -11.53 11.66 -50.84 -0.59 -12.12 15 5 N -0.30 -12.74 11.66 -50.85 -0.59 -13.33 15 6 C -0.02 -0.89 7.11 88.46 0.63 -0.26 15 7 C 0.22 8.84 6.24 85.63 0.53 9.38 15 8 N -0.60 -29.92 2.91 -731.32 -2.13 -32.06 15 9 C 0.18 9.25 8.97 127.77 1.15 10.40 15 10 C -0.27 -14.25 9.70 84.04 0.82 -13.43 15 11 H 0.08 4.13 7.87 -2.91 -0.02 4.11 15 12 C -0.05 -2.65 5.08 84.87 0.43 -2.22 15 13 N -0.93 -54.50 10.51 21.65 0.23 -54.27 15 14 Si 0.97 43.62 29.58 68.60 2.03 45.65 15 15 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 16 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 17 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 18 S 0.20 6.10 23.04 -56.49 -1.30 4.80 15 19 H 0.05 0.89 8.14 -2.39 -0.02 0.87 15 20 H 0.06 0.92 8.14 -2.39 -0.02 0.90 15 21 H 0.10 0.98 8.14 -2.39 -0.02 0.96 15 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.08 3.17 8.07 -2.39 -0.02 3.15 15 25 H 0.09 3.39 8.04 -2.39 -0.02 3.37 15 26 H 0.02 0.89 7.48 -2.39 -0.02 0.87 15 27 H 0.02 0.93 8.03 -2.39 -0.02 0.91 15 28 H 0.02 1.07 7.01 -2.39 -0.02 1.06 15 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 15 Total: -1.00 -65.87 266.52 3.84 -62.03 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.14 Total: -2.13 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.06 Total: 1.43 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.09 Total: -111.78 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.30 Total: 4.80 kcal Total: -65.87 3.84 -62.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308265312.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.213 kcal (2) G-P(sol) polarization free energy of solvation -65.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds