Wall clock time and date at job start Mon Mar 30 2020 03:17:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86800 * 119.99929 * 2 1
4 4 H 1.48496 * 109.47063 * 270.00171 * 3 2 1
5 5 H 1.48491 * 109.47308 * 30.00455 * 3 2 1
6 6 H 1.48505 * 109.46783 * 150.00459 * 3 2 1
7 7 C 1.38945 * 119.99957 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1
9 9 N 1.37101 * 120.00338 * 179.97438 * 7 2 1
10 10 C 1.34776 * 119.99949 * 180.02562 * 9 7 2
11 11 O 1.21283 * 120.00183 * 0.02562 * 10 9 7
12 12 C 1.50701 * 119.99299 * 179.97438 * 10 9 7
13 13 C 1.53007 * 109.46625 * 174.79333 * 12 10 9
14 14 C 1.50698 * 112.84851 * 293.98258 * 13 12 10
15 15 O 1.20829 * 119.99889 * 120.44628 * 14 13 12
16 16 O 1.34227 * 120.00088 * 300.43924 * 14 13 12
17 17 C 1.53784 * 113.61276 * 162.67977 * 13 12 10
18 18 C 1.53787 * 87.07743 * 220.01911 * 17 13 12
19 19 C 1.53776 * 113.61283 * 65.18229 * 13 12 10
20 20 H 0.97008 * 119.99795 * 359.97438 * 1 2 3
21 21 H 0.96999 * 119.99644 * 359.97438 * 9 7 2
22 22 H 1.08996 * 109.47813 * 294.79325 * 12 10 9
23 23 H 1.09006 * 109.47349 * 54.80022 * 12 10 9
24 24 H 0.96704 * 116.99804 * 179.97438 * 16 14 13
25 25 H 1.09005 * 113.61285 * 334.56042 * 17 13 12
26 26 H 1.08996 * 113.61505 * 105.47251 * 17 13 12
27 27 H 1.09000 * 113.61160 * 270.87976 * 18 17 13
28 28 H 1.09005 * 113.60913 * 139.97984 * 18 17 13
29 29 H 1.09004 * 113.61525 * 254.52896 * 19 13 12
30 30 H 1.08996 * 113.61670 * 25.42948 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4955 2.0464 -1.4000
5 1 1.4456 2.6526 0.7001
6 1 3.5457 1.4401 0.7000
7 6 2.0088 -1.2033 -0.0005
8 1 1.4688 -2.1386 -0.0005
9 7 3.3798 -1.2034 -0.0011
10 6 4.0536 -2.3706 -0.0021
11 8 3.4472 -3.4210 -0.0031
12 6 5.5606 -2.3706 -0.0033
13 6 6.0707 -3.8073 0.1266
14 6 5.7346 -4.4295 1.4573
15 8 5.0641 -5.4337 1.5026
16 8 6.1801 -3.8683 2.5923
17 6 7.5440 -3.9770 -0.2804
18 6 7.1263 -5.2997 -0.9445
19 6 5.7175 -4.6974 -1.0765
20 1 -0.4850 0.8401 0.0004
21 1 3.8648 -0.3634 -0.0014
22 1 5.9233 -1.9392 -0.9362
23 1 5.9246 -1.7785 0.8365
24 1 5.9384 -4.3033 3.4215
25 1 7.8911 -3.2239 -0.9878
26 1 8.2185 -4.1073 0.5659
27 1 7.1731 -6.1584 -0.2748
28 1 7.6151 -5.4810 -1.9018
29 1 4.9175 -5.4093 -0.8731
30 1 5.5653 -4.1412 -2.0015
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308644919.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:17:24
Heat of formation + Delta-G solvation = -107.983708 kcal
Electronic energy + Delta-G solvation = -16093.713427 eV
Core-core repulsion = 13275.795506 eV
Total energy + Delta-G solvation = -2817.917921 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.78437 -38.44961 -37.47895 -35.67120 -33.97449 -31.70746 -30.29869 -25.86848
-25.45603 -23.93619 -22.11958 -19.38971 -19.10470 -18.38826 -17.42316 -16.15520
-15.92687 -15.40841 -14.85407 -14.43860 -14.17303 -14.07677 -13.29269 -12.73011
-12.71207 -12.34299 -12.19592 -11.80213 -11.42902 -11.21470 -11.15851 -10.82175
-10.59263 -10.32858 -10.15768 -9.99883 -9.96346 -9.56570 -8.48719 -8.17954
-6.31069 -3.82415 2.58692 3.02727 3.06465 3.14855 3.26776 3.73761
4.09985 4.31209 4.61309 4.80231 4.92846 5.01566 5.22938 5.40931
5.56161 5.69286 5.80541 5.82907 5.90861 5.98536 6.05000 6.26339
6.43395 6.58031 6.80957 7.56479 8.14594 8.25569 8.58558 8.94823
9.42417 9.81970 10.82051
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.039915 B = 0.007453 C = 0.007306
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 701.325885 B = 3755.726500 C = 3831.782636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.041 3.959
3 Si 0.879 3.121
4 H -0.270 1.270
5 H -0.276 1.276
6 H -0.269 1.269
7 C -0.305 4.305
8 H 0.119 0.881
9 N -0.589 5.589
10 C 0.442 3.558
11 O -0.563 6.563
12 C -0.121 4.121
13 C -0.055 4.055
14 C 0.508 3.492
15 O -0.496 6.496
16 O -0.520 6.520
17 C -0.122 4.122
18 C -0.150 4.150
19 C -0.102 4.102
20 H 0.273 0.727
21 H 0.371 0.629
22 H 0.094 0.906
23 H 0.088 0.912
24 H 0.405 0.595
25 H 0.096 0.904
26 H 0.072 0.928
27 H 0.078 0.922
28 H 0.072 0.928
29 H 0.091 0.909
30 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.555 -2.763 0.315 16.787
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.521 5.521
2 C -0.162 4.162
3 Si 0.706 3.294
4 H -0.196 1.196
5 H -0.202 1.202
6 H -0.194 1.194
7 C -0.434 4.434
8 H 0.137 0.863
9 N -0.228 5.228
10 C 0.228 3.772
11 O -0.445 6.445
12 C -0.161 4.161
13 C -0.056 4.056
14 C 0.349 3.651
15 O -0.381 6.381
16 O -0.332 6.332
17 C -0.160 4.160
18 C -0.188 4.188
19 C -0.139 4.139
20 H 0.084 0.916
21 H 0.203 0.797
22 H 0.113 0.887
23 H 0.106 0.894
24 H 0.263 0.737
25 H 0.114 0.886
26 H 0.091 0.909
27 H 0.097 0.903
28 H 0.091 0.909
29 H 0.109 0.891
30 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 15.837 -3.449 -0.048 16.208
hybrid contribution 0.271 1.287 0.666 1.474
sum 16.107 -2.162 0.618 16.264
Atomic orbital electron populations
1.69628 1.05663 1.27488 1.49328 1.25048 0.95498 0.97995 0.97641
0.86674 0.79833 0.84028 0.78903 1.19589 1.20165 1.19430 1.19454
0.79316 0.96641 1.48007 0.86294 1.42229 1.07535 1.06177 1.66843
1.19805 0.88361 0.84717 0.84347 1.90634 1.69572 1.30577 1.53746
1.21577 0.95648 0.94875 1.04034 1.21189 0.98047 0.96087 0.90299
1.22509 0.75591 0.81703 0.85299 1.90675 1.34801 1.25237 1.87394
1.84491 1.72936 1.58349 1.17431 1.23038 0.93471 0.98633 1.00828
1.22991 0.97801 0.96882 1.01092 1.22803 0.97292 0.98268 0.95584
0.91618 0.79663 0.88731 0.89355 0.73667 0.88592 0.90912 0.90332
0.90934 0.89064 0.89110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16
2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16
3 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16
4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16
5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16
6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16
7 C -0.31 -8.73 10.16 -14.93 -0.15 -8.89 16
8 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16
9 N -0.59 -14.13 5.09 -10.96 -0.06 -14.19 16
10 C 0.44 10.03 7.43 -10.99 -0.08 9.95 16
11 O -0.56 -15.08 13.91 5.55 0.08 -15.00 16
12 C -0.12 -1.96 5.13 -27.88 -0.14 -2.10 16
13 C -0.05 -0.85 0.70 -154.85 -0.11 -0.96 16
14 C 0.51 8.88 6.00 36.00 0.22 9.10 16
15 O -0.50 -10.31 16.56 -18.90 -0.31 -10.62 16
16 O -0.52 -7.35 13.42 -39.25 -0.53 -7.87 16
17 C -0.12 -1.38 7.22 -25.91 -0.19 -1.56 16
18 C -0.15 -1.79 7.81 -25.92 -0.20 -2.00 16
19 C -0.10 -1.60 5.82 -25.92 -0.15 -1.75 16
20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
21 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16
22 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16
23 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16
24 H 0.41 4.03 9.10 45.56 0.41 4.44 16
25 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16
26 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16
27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16
28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.09 1.73 7.25 -51.93 -0.38 1.35 16
30 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16
LS Contribution 261.68 15.07 3.94 3.94
Total: -1.00 -34.99 261.68 -4.42 -39.41
By element:
Atomic # 1 Polarization: 14.68 SS G_CDS: -2.70 Total: 11.98 kcal
Atomic # 6 Polarization: 3.74 SS G_CDS: -0.90 Total: 2.83 kcal
Atomic # 7 Polarization: -40.10 SS G_CDS: 0.72 Total: -39.38 kcal
Atomic # 8 Polarization: -32.74 SS G_CDS: -0.76 Total: -33.50 kcal
Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -34.99 -4.42 -39.41 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308644919.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.573 kcal
(2) G-P(sol) polarization free energy of solvation -34.994 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.984 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds