Wall clock time and date at job start Mon Mar 30 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48496 * 109.47063 * 270.00171 * 3 2 1 5 5 H 1.48491 * 109.47308 * 30.00455 * 3 2 1 6 6 H 1.48505 * 109.46783 * 150.00459 * 3 2 1 7 7 C 1.38945 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00338 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99949 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00183 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99299 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.46625 * 174.79333 * 12 10 9 14 14 C 1.50698 * 112.84851 * 293.98258 * 13 12 10 15 15 O 1.20829 * 119.99889 * 120.44628 * 14 13 12 16 16 O 1.34227 * 120.00088 * 300.43924 * 14 13 12 17 17 C 1.53784 * 113.61276 * 162.67977 * 13 12 10 18 18 C 1.53787 * 87.07743 * 220.01911 * 17 13 12 19 19 C 1.53776 * 113.61283 * 65.18229 * 13 12 10 20 20 H 0.97008 * 119.99795 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99644 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.47813 * 294.79325 * 12 10 9 23 23 H 1.09006 * 109.47349 * 54.80022 * 12 10 9 24 24 H 0.96704 * 116.99804 * 179.97438 * 16 14 13 25 25 H 1.09005 * 113.61285 * 334.56042 * 17 13 12 26 26 H 1.08996 * 113.61505 * 105.47251 * 17 13 12 27 27 H 1.09000 * 113.61160 * 270.87976 * 18 17 13 28 28 H 1.09005 * 113.60913 * 139.97984 * 18 17 13 29 29 H 1.09004 * 113.61525 * 254.52896 * 19 13 12 30 30 H 1.08996 * 113.61670 * 25.42948 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0031 12 6 5.5606 -2.3706 -0.0033 13 6 6.0707 -3.8073 0.1266 14 6 5.7346 -4.4295 1.4573 15 8 5.0641 -5.4337 1.5026 16 8 6.1801 -3.8683 2.5923 17 6 7.5440 -3.9770 -0.2804 18 6 7.1263 -5.2997 -0.9445 19 6 5.7175 -4.6974 -1.0765 20 1 -0.4850 0.8401 0.0004 21 1 3.8648 -0.3634 -0.0014 22 1 5.9233 -1.9392 -0.9362 23 1 5.9246 -1.7785 0.8365 24 1 5.9384 -4.3033 3.4215 25 1 7.8911 -3.2239 -0.9878 26 1 8.2185 -4.1073 0.5659 27 1 7.1731 -6.1584 -0.2748 28 1 7.6151 -5.4810 -1.9018 29 1 4.9175 -5.4093 -0.8731 30 1 5.5653 -4.1412 -2.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308644919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:24 Heat of formation + Delta-G solvation = -107.983708 kcal Electronic energy + Delta-G solvation = -16093.713427 eV Core-core repulsion = 13275.795506 eV Total energy + Delta-G solvation = -2817.917921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78437 -38.44961 -37.47895 -35.67120 -33.97449 -31.70746 -30.29869 -25.86848 -25.45603 -23.93619 -22.11958 -19.38971 -19.10470 -18.38826 -17.42316 -16.15520 -15.92687 -15.40841 -14.85407 -14.43860 -14.17303 -14.07677 -13.29269 -12.73011 -12.71207 -12.34299 -12.19592 -11.80213 -11.42902 -11.21470 -11.15851 -10.82175 -10.59263 -10.32858 -10.15768 -9.99883 -9.96346 -9.56570 -8.48719 -8.17954 -6.31069 -3.82415 2.58692 3.02727 3.06465 3.14855 3.26776 3.73761 4.09985 4.31209 4.61309 4.80231 4.92846 5.01566 5.22938 5.40931 5.56161 5.69286 5.80541 5.82907 5.90861 5.98536 6.05000 6.26339 6.43395 6.58031 6.80957 7.56479 8.14594 8.25569 8.58558 8.94823 9.42417 9.81970 10.82051 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.007453 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.325885 B = 3755.726500 C = 3831.782636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.589 5.589 10 C 0.442 3.558 11 O -0.563 6.563 12 C -0.121 4.121 13 C -0.055 4.055 14 C 0.508 3.492 15 O -0.496 6.496 16 O -0.520 6.520 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.102 4.102 20 H 0.273 0.727 21 H 0.371 0.629 22 H 0.094 0.906 23 H 0.088 0.912 24 H 0.405 0.595 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.555 -2.763 0.315 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.228 5.228 10 C 0.228 3.772 11 O -0.445 6.445 12 C -0.161 4.161 13 C -0.056 4.056 14 C 0.349 3.651 15 O -0.381 6.381 16 O -0.332 6.332 17 C -0.160 4.160 18 C -0.188 4.188 19 C -0.139 4.139 20 H 0.084 0.916 21 H 0.203 0.797 22 H 0.113 0.887 23 H 0.106 0.894 24 H 0.263 0.737 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.837 -3.449 -0.048 16.208 hybrid contribution 0.271 1.287 0.666 1.474 sum 16.107 -2.162 0.618 16.264 Atomic orbital electron populations 1.69628 1.05663 1.27488 1.49328 1.25048 0.95498 0.97995 0.97641 0.86674 0.79833 0.84028 0.78903 1.19589 1.20165 1.19430 1.19454 0.79316 0.96641 1.48007 0.86294 1.42229 1.07535 1.06177 1.66843 1.19805 0.88361 0.84717 0.84347 1.90634 1.69572 1.30577 1.53746 1.21577 0.95648 0.94875 1.04034 1.21189 0.98047 0.96087 0.90299 1.22509 0.75591 0.81703 0.85299 1.90675 1.34801 1.25237 1.87394 1.84491 1.72936 1.58349 1.17431 1.23038 0.93471 0.98633 1.00828 1.22991 0.97801 0.96882 1.01092 1.22803 0.97292 0.98268 0.95584 0.91618 0.79663 0.88731 0.89355 0.73667 0.88592 0.90912 0.90332 0.90934 0.89064 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.73 10.16 -14.93 -0.15 -8.89 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 9 N -0.59 -14.13 5.09 -10.96 -0.06 -14.19 16 10 C 0.44 10.03 7.43 -10.99 -0.08 9.95 16 11 O -0.56 -15.08 13.91 5.55 0.08 -15.00 16 12 C -0.12 -1.96 5.13 -27.88 -0.14 -2.10 16 13 C -0.05 -0.85 0.70 -154.85 -0.11 -0.96 16 14 C 0.51 8.88 6.00 36.00 0.22 9.10 16 15 O -0.50 -10.31 16.56 -18.90 -0.31 -10.62 16 16 O -0.52 -7.35 13.42 -39.25 -0.53 -7.87 16 17 C -0.12 -1.38 7.22 -25.91 -0.19 -1.56 16 18 C -0.15 -1.79 7.81 -25.92 -0.20 -2.00 16 19 C -0.10 -1.60 5.82 -25.92 -0.15 -1.75 16 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 22 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 23 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.41 4.03 9.10 45.56 0.41 4.44 16 25 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16 26 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.73 7.25 -51.93 -0.38 1.35 16 30 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 261.68 15.07 3.94 3.94 Total: -1.00 -34.99 261.68 -4.42 -39.41 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -2.70 Total: 11.98 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.90 Total: 2.83 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.72 Total: -39.38 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.76 Total: -33.50 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.99 -4.42 -39.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308644919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.573 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds