Wall clock time and date at job start Mon Mar 30 2020 03:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48496 * 109.47063 * 270.00171 * 3 2 1 5 5 H 1.48491 * 109.47308 * 30.00455 * 3 2 1 6 6 H 1.48505 * 109.46783 * 150.00459 * 3 2 1 7 7 C 1.38945 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00338 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99949 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00183 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99299 * 179.97438 * 10 9 7 13 13 C 1.53007 * 109.46625 * 174.79333 * 12 10 9 14 14 C 1.50698 * 112.84851 * 293.98258 * 13 12 10 15 15 O 1.20829 * 119.99889 * 120.44628 * 14 13 12 16 16 O 1.34227 * 120.00088 * 300.43924 * 14 13 12 17 17 C 1.53784 * 113.61276 * 162.67977 * 13 12 10 18 18 C 1.53787 * 87.07743 * 220.01911 * 17 13 12 19 19 C 1.53776 * 113.61283 * 65.18229 * 13 12 10 20 20 H 0.97008 * 119.99795 * 359.97438 * 1 2 3 21 21 H 0.96999 * 119.99644 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.47813 * 294.79325 * 12 10 9 23 23 H 1.09006 * 109.47349 * 54.80022 * 12 10 9 24 24 H 0.96704 * 116.99804 * 179.97438 * 16 14 13 25 25 H 1.09005 * 113.61285 * 334.56042 * 17 13 12 26 26 H 1.08996 * 113.61505 * 105.47251 * 17 13 12 27 27 H 1.09000 * 113.61160 * 270.87976 * 18 17 13 28 28 H 1.09005 * 113.60913 * 139.97984 * 18 17 13 29 29 H 1.09004 * 113.61525 * 254.52896 * 19 13 12 30 30 H 1.08996 * 113.61670 * 25.42948 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0031 12 6 5.5606 -2.3706 -0.0033 13 6 6.0707 -3.8073 0.1266 14 6 5.7346 -4.4295 1.4573 15 8 5.0641 -5.4337 1.5026 16 8 6.1801 -3.8683 2.5923 17 6 7.5440 -3.9770 -0.2804 18 6 7.1263 -5.2997 -0.9445 19 6 5.7175 -4.6974 -1.0765 20 1 -0.4850 0.8401 0.0004 21 1 3.8648 -0.3634 -0.0014 22 1 5.9233 -1.9392 -0.9362 23 1 5.9246 -1.7785 0.8365 24 1 5.9384 -4.3033 3.4215 25 1 7.8911 -3.2239 -0.9878 26 1 8.2185 -4.1073 0.5659 27 1 7.1731 -6.1584 -0.2748 28 1 7.6151 -5.4810 -1.9018 29 1 4.9175 -5.4093 -0.8731 30 1 5.5653 -4.1412 -2.0015 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308644919.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:23 Heat of formation + Delta-G solvation = -135.916945 kcal Electronic energy + Delta-G solvation = -16094.924703 eV Core-core repulsion = 13275.795506 eV Total energy + Delta-G solvation = -2819.129197 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06110 -40.11917 -38.81223 -36.99140 -35.99773 -33.77944 -31.66554 -27.48418 -26.56637 -25.56493 -23.30352 -21.26971 -20.35140 -20.21015 -18.76188 -17.70969 -17.36508 -16.80280 -16.65502 -15.84399 -15.55088 -15.39346 -14.97419 -14.50347 -14.28298 -13.90606 -13.35614 -13.19902 -12.89631 -12.60812 -12.50260 -12.42209 -11.98936 -11.88361 -11.52724 -11.42804 -11.33968 -11.18041 -10.35729 -10.24710 -8.42176 -6.03434 1.26685 1.30147 1.35851 1.45001 1.96134 2.12071 2.23077 2.85174 3.14453 3.52260 3.58753 3.79101 3.91288 4.19198 4.46001 4.53135 4.64557 4.83812 4.85443 4.90122 5.08319 5.20105 5.24919 5.47838 5.54070 5.64248 5.94084 6.57219 6.87473 7.03717 7.38677 7.96847 8.75831 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.007453 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.325885 B = 3755.726500 C = 3831.782636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.330 4.330 8 H 0.050 0.950 9 N -0.591 5.591 10 C 0.439 3.561 11 O -0.613 6.613 12 C -0.109 4.109 13 C -0.073 4.073 14 C 0.502 3.498 15 O -0.545 6.545 16 O -0.509 6.509 17 C -0.095 4.095 18 C -0.139 4.139 19 C -0.117 4.117 20 H 0.279 0.721 21 H 0.391 0.609 22 H 0.140 0.860 23 H 0.117 0.883 24 H 0.422 0.578 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.763 -0.147 -0.004 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.178 1.178 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.459 4.459 8 H 0.068 0.932 9 N -0.232 5.232 10 C 0.227 3.773 11 O -0.497 6.497 12 C -0.148 4.148 13 C -0.074 4.074 14 C 0.345 3.655 15 O -0.435 6.435 16 O -0.322 6.322 17 C -0.132 4.132 18 C -0.177 4.177 19 C -0.155 4.155 20 H 0.088 0.912 21 H 0.227 0.773 22 H 0.158 0.842 23 H 0.135 0.865 24 H 0.283 0.717 25 H 0.151 0.849 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.089 -0.834 -0.345 20.109 hybrid contribution -1.134 0.315 0.805 1.426 sum 18.955 -0.519 0.460 18.968 Atomic orbital electron populations 1.69822 1.08290 1.29277 1.50362 1.26178 0.96496 1.02906 0.95984 0.85339 0.79515 0.76384 0.80127 1.17813 1.20131 1.15198 1.18999 0.81739 0.94776 1.50427 0.93166 1.42058 1.05682 1.07697 1.67768 1.21195 0.91407 0.83379 0.81323 1.90636 1.71649 1.32508 1.54932 1.21655 0.89515 0.96091 1.07586 1.21468 1.01733 0.95281 0.88939 1.23121 0.74538 0.81096 0.86751 1.90661 1.37026 1.27591 1.88178 1.84442 1.72173 1.57876 1.17681 1.23053 0.90045 0.98373 1.01696 1.22925 0.95070 0.97175 1.02481 1.22863 0.98116 0.98225 0.96294 0.91159 0.77344 0.84207 0.86455 0.71736 0.84937 0.89286 0.91591 0.88057 0.94103 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.96 21.66 0.30 -57.02 16 2 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 3 Si 0.97 38.69 27.74 68.60 1.90 40.59 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 7 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 8 H 0.05 3.60 7.39 -2.91 -0.02 3.57 16 9 N -0.59 -27.91 5.09 -306.99 -1.56 -29.48 16 10 C 0.44 19.73 7.43 87.66 0.65 20.38 16 11 O -0.61 -34.40 13.91 -3.04 -0.04 -34.44 16 12 C -0.11 -3.11 5.13 29.85 0.15 -2.96 16 13 C -0.07 -2.09 0.70 -52.40 -0.04 -2.12 16 14 C 0.50 17.22 6.00 71.24 0.43 17.65 16 15 O -0.55 -23.64 16.56 22.10 0.37 -23.27 16 16 O -0.51 -13.32 13.42 -51.39 -0.69 -14.01 16 17 C -0.09 -1.65 7.22 31.12 0.22 -1.43 16 18 C -0.14 -2.95 7.81 31.12 0.24 -2.71 16 19 C -0.12 -3.60 5.82 31.12 0.18 -3.42 16 20 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 21 H 0.39 15.05 5.76 -92.71 -0.53 14.52 16 22 H 0.14 2.83 8.05 -2.39 -0.02 2.81 16 23 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 24 H 0.42 7.81 9.10 -74.05 -0.67 7.13 16 25 H 0.13 1.44 8.04 -2.38 -0.02 1.42 16 26 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.04 1.64 7.25 -2.39 -0.02 1.63 16 30 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 Total: -1.00 -85.19 261.68 3.35 -81.84 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.09 Total: 29.71 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 3.16 Total: 6.09 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.26 Total: -86.50 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -0.37 Total: -71.73 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -85.19 3.35 -81.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308644919.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.079 kcal (2) G-P(sol) polarization free energy of solvation -85.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds