Wall clock time and date at job start Mon Mar 30 2020 03:17:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86800 * 119.99929 * 2 1
4 4 H 1.48496 * 109.47063 * 270.00171 * 3 2 1
5 5 H 1.48491 * 109.47308 * 30.00455 * 3 2 1
6 6 H 1.48505 * 109.46783 * 150.00459 * 3 2 1
7 7 C 1.38945 * 119.99957 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99828 * 359.97438 * 7 2 1
9 9 N 1.37101 * 120.00338 * 179.97438 * 7 2 1
10 10 C 1.34776 * 119.99949 * 180.02562 * 9 7 2
11 11 O 1.21283 * 120.00183 * 0.02562 * 10 9 7
12 12 C 1.50701 * 119.99299 * 179.97438 * 10 9 7
13 13 C 1.53007 * 109.46625 * 174.79333 * 12 10 9
14 14 C 1.50698 * 112.84851 * 293.98258 * 13 12 10
15 15 O 1.20829 * 119.99889 * 120.44628 * 14 13 12
16 16 O 1.34227 * 120.00088 * 300.43924 * 14 13 12
17 17 C 1.53784 * 113.61276 * 162.67977 * 13 12 10
18 18 C 1.53787 * 87.07743 * 220.01911 * 17 13 12
19 19 C 1.53776 * 113.61283 * 65.18229 * 13 12 10
20 20 H 0.97008 * 119.99795 * 359.97438 * 1 2 3
21 21 H 0.96999 * 119.99644 * 359.97438 * 9 7 2
22 22 H 1.08996 * 109.47813 * 294.79325 * 12 10 9
23 23 H 1.09006 * 109.47349 * 54.80022 * 12 10 9
24 24 H 0.96704 * 116.99804 * 179.97438 * 16 14 13
25 25 H 1.09005 * 113.61285 * 334.56042 * 17 13 12
26 26 H 1.08996 * 113.61505 * 105.47251 * 17 13 12
27 27 H 1.09000 * 113.61160 * 270.87976 * 18 17 13
28 28 H 1.09005 * 113.60913 * 139.97984 * 18 17 13
29 29 H 1.09004 * 113.61525 * 254.52896 * 19 13 12
30 30 H 1.08996 * 113.61670 * 25.42948 * 19 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 2.4955 2.0464 -1.4000
5 1 1.4456 2.6526 0.7001
6 1 3.5457 1.4401 0.7000
7 6 2.0088 -1.2033 -0.0005
8 1 1.4688 -2.1386 -0.0005
9 7 3.3798 -1.2034 -0.0011
10 6 4.0536 -2.3706 -0.0021
11 8 3.4472 -3.4210 -0.0031
12 6 5.5606 -2.3706 -0.0033
13 6 6.0707 -3.8073 0.1266
14 6 5.7346 -4.4295 1.4573
15 8 5.0641 -5.4337 1.5026
16 8 6.1801 -3.8683 2.5923
17 6 7.5440 -3.9770 -0.2804
18 6 7.1263 -5.2997 -0.9445
19 6 5.7175 -4.6974 -1.0765
20 1 -0.4850 0.8401 0.0004
21 1 3.8648 -0.3634 -0.0014
22 1 5.9233 -1.9392 -0.9362
23 1 5.9246 -1.7785 0.8365
24 1 5.9384 -4.3033 3.4215
25 1 7.8911 -3.2239 -0.9878
26 1 8.2185 -4.1073 0.5659
27 1 7.1731 -6.1584 -0.2748
28 1 7.6151 -5.4810 -1.9018
29 1 4.9175 -5.4093 -0.8731
30 1 5.5653 -4.1412 -2.0015
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308644919.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:17:23
Heat of formation + Delta-G solvation = -135.916945 kcal
Electronic energy + Delta-G solvation = -16094.924703 eV
Core-core repulsion = 13275.795506 eV
Total energy + Delta-G solvation = -2819.129197 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.06110 -40.11917 -38.81223 -36.99140 -35.99773 -33.77944 -31.66554 -27.48418
-26.56637 -25.56493 -23.30352 -21.26971 -20.35140 -20.21015 -18.76188 -17.70969
-17.36508 -16.80280 -16.65502 -15.84399 -15.55088 -15.39346 -14.97419 -14.50347
-14.28298 -13.90606 -13.35614 -13.19902 -12.89631 -12.60812 -12.50260 -12.42209
-11.98936 -11.88361 -11.52724 -11.42804 -11.33968 -11.18041 -10.35729 -10.24710
-8.42176 -6.03434 1.26685 1.30147 1.35851 1.45001 1.96134 2.12071
2.23077 2.85174 3.14453 3.52260 3.58753 3.79101 3.91288 4.19198
4.46001 4.53135 4.64557 4.83812 4.85443 4.90122 5.08319 5.20105
5.24919 5.47838 5.54070 5.64248 5.94084 6.57219 6.87473 7.03717
7.38677 7.96847 8.75831
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.039915 B = 0.007453 C = 0.007306
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 701.325885 B = 3755.726500 C = 3831.782636
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.017 4.017
3 Si 0.967 3.033
4 H -0.254 1.254
5 H -0.276 1.276
6 H -0.229 1.229
7 C -0.330 4.330
8 H 0.050 0.950
9 N -0.591 5.591
10 C 0.439 3.561
11 O -0.613 6.613
12 C -0.109 4.109
13 C -0.073 4.073
14 C 0.502 3.498
15 O -0.545 6.545
16 O -0.509 6.509
17 C -0.095 4.095
18 C -0.139 4.139
19 C -0.117 4.117
20 H 0.279 0.721
21 H 0.391 0.609
22 H 0.140 0.860
23 H 0.117 0.883
24 H 0.422 0.578
25 H 0.133 0.867
26 H 0.089 0.911
27 H 0.065 0.935
28 H 0.101 0.899
29 H 0.040 0.960
30 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.763 -0.147 -0.004 20.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.216 4.216
3 Si 0.786 3.214
4 H -0.178 1.178
5 H -0.201 1.201
6 H -0.152 1.152
7 C -0.459 4.459
8 H 0.068 0.932
9 N -0.232 5.232
10 C 0.227 3.773
11 O -0.497 6.497
12 C -0.148 4.148
13 C -0.074 4.074
14 C 0.345 3.655
15 O -0.435 6.435
16 O -0.322 6.322
17 C -0.132 4.132
18 C -0.177 4.177
19 C -0.155 4.155
20 H 0.088 0.912
21 H 0.227 0.773
22 H 0.158 0.842
23 H 0.135 0.865
24 H 0.283 0.717
25 H 0.151 0.849
26 H 0.107 0.893
27 H 0.084 0.916
28 H 0.119 0.881
29 H 0.059 0.941
30 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 20.089 -0.834 -0.345 20.109
hybrid contribution -1.134 0.315 0.805 1.426
sum 18.955 -0.519 0.460 18.968
Atomic orbital electron populations
1.69822 1.08290 1.29277 1.50362 1.26178 0.96496 1.02906 0.95984
0.85339 0.79515 0.76384 0.80127 1.17813 1.20131 1.15198 1.18999
0.81739 0.94776 1.50427 0.93166 1.42058 1.05682 1.07697 1.67768
1.21195 0.91407 0.83379 0.81323 1.90636 1.71649 1.32508 1.54932
1.21655 0.89515 0.96091 1.07586 1.21468 1.01733 0.95281 0.88939
1.23121 0.74538 0.81096 0.86751 1.90661 1.37026 1.27591 1.88178
1.84442 1.72173 1.57876 1.17681 1.23053 0.90045 0.98373 1.01696
1.22925 0.95070 0.97175 1.02481 1.22863 0.98116 0.98225 0.96294
0.91159 0.77344 0.84207 0.86455 0.71736 0.84937 0.89286 0.91591
0.88057 0.94103 0.88241
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.33 13.96 21.66 0.30 -57.02 16
2 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16
3 Si 0.97 38.69 27.74 68.60 1.90 40.59 16
4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16
5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16
6 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16
7 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16
8 H 0.05 3.60 7.39 -2.91 -0.02 3.57 16
9 N -0.59 -27.91 5.09 -306.99 -1.56 -29.48 16
10 C 0.44 19.73 7.43 87.66 0.65 20.38 16
11 O -0.61 -34.40 13.91 -3.04 -0.04 -34.44 16
12 C -0.11 -3.11 5.13 29.85 0.15 -2.96 16
13 C -0.07 -2.09 0.70 -52.40 -0.04 -2.12 16
14 C 0.50 17.22 6.00 71.24 0.43 17.65 16
15 O -0.55 -23.64 16.56 22.10 0.37 -23.27 16
16 O -0.51 -13.32 13.42 -51.39 -0.69 -14.01 16
17 C -0.09 -1.65 7.22 31.12 0.22 -1.43 16
18 C -0.14 -2.95 7.81 31.12 0.24 -2.71 16
19 C -0.12 -3.60 5.82 31.12 0.18 -3.42 16
20 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16
21 H 0.39 15.05 5.76 -92.71 -0.53 14.52 16
22 H 0.14 2.83 8.05 -2.39 -0.02 2.81 16
23 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16
24 H 0.42 7.81 9.10 -74.05 -0.67 7.13 16
25 H 0.13 1.44 8.04 -2.38 -0.02 1.42 16
26 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16
27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
28 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16
29 H 0.04 1.64 7.25 -2.39 -0.02 1.63 16
30 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16
Total: -1.00 -85.19 261.68 3.35 -81.84
By element:
Atomic # 1 Polarization: 29.80 SS G_CDS: -0.09 Total: 29.71 kcal
Atomic # 6 Polarization: 2.92 SS G_CDS: 3.16 Total: 6.09 kcal
Atomic # 7 Polarization: -85.24 SS G_CDS: -1.26 Total: -86.50 kcal
Atomic # 8 Polarization: -71.36 SS G_CDS: -0.37 Total: -71.73 kcal
Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal
Total: -85.19 3.35 -81.84 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308644919.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.079 kcal
(2) G-P(sol) polarization free energy of solvation -85.189 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.917 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds