Wall clock time and date at job start Mon Mar 30 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47137 * 2 1 4 4 N 1.46498 * 109.47184 * 120.00308 * 2 1 3 5 5 C 1.36936 * 119.99878 * 294.95658 * 4 2 1 6 6 H 1.07996 * 120.00020 * 37.18746 * 5 4 2 7 7 C 1.38816 * 119.99948 * 217.18650 * 5 4 2 8 8 N 1.31620 * 119.99651 * 21.24002 * 7 5 4 9 9 Si 1.86797 * 120.00317 * 201.23342 * 7 5 4 10 10 H 1.48506 * 109.46968 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46975 * 120.00069 * 9 7 5 12 12 H 1.48498 * 109.47558 * 240.00310 * 9 7 5 13 13 C 1.46500 * 120.00196 * 114.95075 * 4 2 1 14 14 C 1.50700 * 109.47614 * 270.00188 * 13 4 2 15 15 C 1.35349 * 123.76599 * 94.99677 * 14 13 4 16 16 S 1.72114 * 104.15072 * 179.97438 * 15 14 13 17 17 N 1.56511 * 95.88776 * 0.02562 * 16 15 14 18 18 N 1.27574 * 109.22255 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.46891 * 303.11516 * 1 2 3 20 20 H 1.08996 * 109.46781 * 63.10774 * 1 2 3 21 21 H 1.08995 * 109.46946 * 183.11141 * 1 2 3 22 22 H 1.09007 * 109.46718 * 239.99922 * 2 1 3 23 23 H 1.09006 * 109.47134 * 181.68368 * 3 2 1 24 24 H 1.08999 * 109.47527 * 301.68393 * 3 2 1 25 25 H 1.08995 * 109.47191 * 61.69129 * 3 2 1 26 26 H 0.97001 * 119.99778 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.47254 * 149.99880 * 13 4 2 28 28 H 1.09004 * 109.46945 * 30.00453 * 13 4 2 29 29 H 1.08000 * 127.92026 * 359.94581 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7748 -0.1657 2.4372 6 1 0.8323 0.3198 2.6427 7 6 2.7395 -0.2577 3.4312 8 7 4.0007 -0.4512 3.1083 9 14 2.2477 -0.1067 5.2269 10 1 0.7809 0.1052 5.3223 11 1 2.6153 -1.3522 5.9472 12 1 2.9556 1.0464 5.8388 13 6 2.7671 -1.9430 1.0645 14 6 1.8094 -3.1062 1.0915 15 6 1.3059 -3.6920 -0.0199 16 16 0.2893 -4.9413 0.5868 17 7 0.5594 -4.6474 2.1001 18 7 1.3690 -3.6665 2.1995 19 1 -0.3633 0.5614 0.8607 20 1 -0.3633 0.4648 -0.9165 21 1 -0.3633 -1.0261 0.0558 22 1 1.8933 -0.5139 -0.8901 23 1 3.1297 1.4426 -0.0302 24 1 1.6523 1.9650 -0.8745 25 1 1.7017 1.9475 0.9047 26 1 4.6748 -0.5151 3.8028 27 1 3.4720 -2.0334 1.8910 28 1 3.3122 -1.9429 0.1205 29 1 1.4977 -3.4342 -1.0510 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379344794.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:01 Heat of formation + Delta-G solvation = 67.898432 kcal Electronic energy + Delta-G solvation = -14143.446377 eV Core-core repulsion = 11808.200900 eV Total energy + Delta-G solvation = -2335.245477 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60416 -38.23487 -34.33786 -33.62903 -31.07889 -27.93012 -27.74035 -27.43067 -24.97163 -21.89093 -21.35253 -19.28271 -18.11528 -16.81260 -16.58172 -16.43650 -15.79860 -15.46196 -14.87115 -14.32095 -13.82834 -13.42188 -13.21073 -13.02293 -12.86164 -12.84398 -12.57945 -12.34554 -12.00125 -11.80656 -11.78036 -11.34060 -10.82147 -10.62575 -10.50548 -10.35998 -8.57285 -7.83395 -5.40635 -0.50922 0.44499 0.97204 1.39159 1.47348 1.51418 1.54164 2.51859 3.27947 3.46634 3.71520 4.23856 4.33512 4.36072 4.59973 4.73665 4.89477 4.95323 4.98004 5.15201 5.18958 5.20285 5.60364 5.62611 5.69873 5.80495 6.49877 7.14853 7.19841 7.88411 8.36801 9.14203 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.012217 C = 0.009220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.518928 B = 2291.284779 C = 3036.155725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.155 3.845 3 C -0.136 4.136 4 N -0.578 5.578 5 C -0.243 4.243 6 H 0.045 0.955 7 C -0.019 4.019 8 N -0.907 5.907 9 Si 0.936 3.064 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.214 3.786 14 C 0.014 3.986 15 C -0.281 4.281 16 S 0.451 5.549 17 N -0.347 5.347 18 N -0.269 5.269 19 H 0.029 0.971 20 H 0.074 0.926 21 H 0.034 0.966 22 H 0.074 0.926 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.250 0.750 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -5.289 -11.376 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.049 3.951 3 C -0.195 4.195 4 N -0.297 5.297 5 C -0.374 4.374 6 H 0.062 0.938 7 C -0.217 4.217 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.213 1.213 13 C 0.084 3.916 14 C -0.133 4.133 15 C -0.439 4.439 16 S 0.585 5.415 17 N -0.326 5.326 18 N -0.136 5.136 19 H 0.048 0.952 20 H 0.093 0.907 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.371 -6.480 -10.138 13.615 hybrid contribution 0.809 1.211 0.888 1.706 sum -5.562 -5.269 -9.250 12.011 Atomic orbital electron populations 1.22065 0.97490 0.99985 1.00732 1.20715 0.92911 0.92642 0.88813 1.21920 0.99793 0.97412 1.00327 1.43997 1.64211 1.19497 1.02023 1.18840 0.96581 1.33122 0.88817 0.93770 1.25490 0.94625 1.00676 1.00894 1.70017 0.99829 1.52993 1.32242 0.85716 0.77806 0.76605 0.83310 1.20328 1.22445 1.21282 1.19478 0.90533 0.79615 1.02008 1.23944 1.02518 1.00259 0.86620 1.28489 1.05223 1.03700 1.06445 1.80554 1.34899 1.26145 0.99913 1.78659 1.18712 1.16487 1.18728 1.71264 1.08209 1.04012 1.30117 0.95199 0.90737 0.94711 0.90803 0.94830 0.91249 0.94869 0.94023 0.90584 0.90777 0.75766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.19 71.98 0.66 -4.22 15 2 C 0.15 5.78 3.37 44.99 0.15 5.93 15 3 C -0.14 -5.02 9.11 71.98 0.66 -4.37 15 4 N -0.58 -26.96 2.35 -682.33 -1.60 -28.56 15 5 C -0.24 -13.12 8.04 84.03 0.68 -12.44 15 6 H 0.04 2.49 7.14 -2.91 -0.02 2.46 15 7 C -0.02 -1.06 4.96 84.86 0.42 -0.63 15 8 N -0.91 -52.31 11.43 21.65 0.25 -52.06 15 9 Si 0.94 47.16 29.60 68.60 2.03 49.19 15 10 H -0.28 -13.88 7.11 99.48 0.71 -13.17 15 11 H -0.30 -15.44 7.11 99.48 0.71 -14.74 15 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 15 13 C 0.21 9.59 5.76 85.63 0.49 10.08 15 14 C 0.01 0.58 6.47 41.90 0.27 0.85 15 15 C -0.28 -8.09 11.35 67.15 0.76 -7.32 15 16 S 0.45 12.06 23.40 -56.49 -1.32 10.74 15 17 N -0.35 -13.70 12.54 37.02 0.46 -13.23 15 18 N -0.27 -12.34 11.68 -51.25 -0.60 -12.94 15 19 H 0.03 1.13 7.31 -2.39 -0.02 1.11 15 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.07 2.37 7.77 -2.38 -0.02 2.35 15 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 15 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.03 1.37 7.50 -2.39 -0.02 1.36 15 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 15 27 H 0.08 4.09 5.48 -2.39 -0.01 4.07 15 28 H 0.07 2.86 7.86 -2.38 -0.02 2.84 15 29 H 0.23 4.45 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -66.21 262.56 4.45 -61.76 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: 1.14 Total: -2.78 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.09 Total: -12.12 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -1.49 Total: -106.79 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 16 Polarization: 12.06 SS G_CDS: -1.32 Total: 10.74 kcal Total: -66.21 4.45 -61.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379344794.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.656 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds