Wall clock time and date at job start Mon Mar 30 2020 03:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47009 * 179.97438 * 3 2 1 5 5 N 1.27569 * 124.80871 * 90.02808 * 4 3 2 6 6 N 1.37802 * 116.54854 * 179.97438 * 5 4 3 7 7 H 0.97000 * 122.97782 * 179.97438 * 6 5 4 8 8 C 1.35586 * 114.05236 * 0.02562 * 6 5 4 9 9 N 1.31086 * 125.81454 * 179.97438 * 8 6 5 10 10 C 1.46506 * 119.99805 * 0.02562 * 9 8 6 11 11 C 1.50704 * 109.46621 * 120.00442 * 10 9 8 12 12 H 1.07996 * 120.00373 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99682 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47101 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47244 * 119.99846 * 15 13 11 18 18 H 1.48493 * 109.47383 * 240.00241 * 15 13 11 19 19 S 1.75880 * 124.80984 * 270.27970 * 4 3 2 20 20 H 1.08996 * 109.47363 * 300.00133 * 1 2 3 21 21 H 1.08999 * 109.47017 * 60.00768 * 1 2 3 22 22 H 1.09009 * 109.47291 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47363 * 239.99867 * 2 1 3 24 24 H 1.09004 * 109.46930 * 119.99718 * 2 1 3 25 25 H 1.09003 * 109.46785 * 59.99515 * 3 2 1 26 26 H 1.08996 * 109.46414 * 300.00068 * 3 2 1 27 27 H 1.08998 * 109.47174 * 239.99778 * 10 9 8 28 28 H 1.08995 * 109.47304 * 0.02562 * 10 9 8 29 29 H 0.97000 * 119.99941 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2756 1.4428 -1.0465 6 7 5.6392 1.4433 -0.8479 7 1 6.2789 1.4432 -1.5771 8 6 6.0077 1.4427 0.4569 9 7 7.2391 1.4425 0.9062 10 6 8.3621 1.4434 -0.0346 11 6 9.2033 2.6738 0.1886 12 1 8.9286 3.3842 0.9542 13 6 10.3235 2.8925 -0.5848 14 7 10.6578 2.0277 -1.5176 15 14 11.3658 4.4179 -0.3088 16 1 10.7798 5.2255 0.7911 17 1 12.7474 4.0140 0.0563 18 1 11.3991 5.2266 -1.5538 19 16 4.5503 1.4356 1.4451 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9562 -0.8900 27 1 8.9708 0.5534 0.1252 28 1 7.9807 1.4447 -1.0556 29 1 11.4457 2.1818 -2.0620 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379360843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:54 Heat of formation + Delta-G solvation = 53.258019 kcal Electronic energy + Delta-G solvation = -12922.456655 eV Core-core repulsion = 10586.576323 eV Total energy + Delta-G solvation = -2335.880333 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.45723 -36.01290 -34.47930 -32.63419 -30.61348 -27.77640 -26.99160 -24.05636 -22.44531 -21.56778 -19.43765 -18.54814 -16.58475 -16.37341 -15.20231 -14.90425 -14.70266 -14.41469 -13.65856 -13.38423 -12.67305 -12.54378 -12.33369 -12.03284 -11.70836 -11.49649 -11.06591 -10.92229 -10.79386 -10.54855 -10.26736 -10.06642 -9.52680 -9.19325 -8.78000 -8.38514 -7.05490 -6.14684 -4.20073 1.32741 1.77867 1.93760 2.85647 3.03130 3.24814 3.31927 3.38881 4.35747 4.60166 4.80309 4.83817 5.13373 5.18378 5.36049 5.50371 5.58953 5.65186 5.88159 5.94223 6.09254 6.11137 6.93127 7.18467 7.34472 7.79412 7.98501 8.11456 8.62138 8.90607 9.45261 10.93467 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.068400 B = 0.005130 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.261025 B = 5456.952173 C = 5551.681490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.030 4.030 4 C 0.043 3.957 5 N -0.224 5.224 6 N -0.557 5.557 7 H 0.443 0.557 8 C 0.281 3.719 9 N -0.504 5.504 10 C 0.190 3.810 11 C -0.510 4.510 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.283 1.283 19 S 0.047 5.953 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.049 0.951 28 H -0.005 1.005 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.554 -2.539 2.035 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.071 4.071 4 C -0.260 4.260 5 N -0.038 5.038 6 N -0.299 5.299 7 H 0.291 0.709 8 C -0.109 4.109 9 N -0.233 5.233 10 C 0.060 3.940 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.209 1.209 19 S 0.277 5.723 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.013 0.987 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.032 -2.577 2.944 18.452 hybrid contribution 1.486 0.792 -1.728 2.413 sum -16.546 -1.785 1.216 16.686 Atomic orbital electron populations 1.21757 0.95090 1.01958 1.02007 1.21544 0.96013 0.95247 1.03224 1.20199 0.83639 0.98838 1.04455 1.27376 1.00792 1.06367 0.91448 1.73040 0.91191 1.13567 1.26014 1.46680 1.01196 1.74878 1.07149 0.70860 1.24674 0.98977 1.02979 0.84251 1.72925 0.95930 1.18408 1.35994 1.19747 0.86987 0.98935 0.88340 1.21099 1.09101 1.05932 1.18718 0.91683 1.25026 0.97355 0.97263 0.94914 1.69958 1.26483 1.35754 1.21327 0.86309 0.79938 0.82320 0.78147 1.19530 1.20692 1.20883 1.85342 0.93791 1.86432 1.06693 0.92460 0.92518 0.92453 0.91306 0.91212 0.89081 0.88899 0.93379 0.98677 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 15 2 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 15 3 C -0.03 -0.28 5.82 -27.88 -0.16 -0.44 15 4 C 0.04 0.61 6.84 -14.05 -0.10 0.51 15 5 N -0.22 -3.74 11.96 32.97 0.39 -3.35 15 6 N -0.56 -10.90 6.79 30.42 0.21 -10.69 15 7 H 0.44 8.81 7.03 -184.30 -1.30 7.51 15 8 C 0.28 5.94 8.29 -89.39 -0.74 5.20 15 9 N -0.50 -12.54 10.64 -62.56 -0.67 -13.21 15 10 C 0.19 5.21 6.14 -5.19 -0.03 5.17 15 11 C -0.51 -15.01 9.39 -34.44 -0.32 -15.33 15 12 H 0.06 1.94 7.81 -52.49 -0.41 1.53 15 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 15 15 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 15 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 19 S 0.05 0.77 23.35 -107.50 -2.51 -1.74 15 20 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 15 21 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 15 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15 25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 15 26 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.00 -0.12 5.98 -51.93 -0.31 -0.43 15 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 LS Contribution 268.91 15.07 4.05 4.05 Total: -1.00 -31.78 268.91 -8.58 -40.36 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.53 Total: -1.43 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.24 Total: -5.11 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.67 Total: -53.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.78 -8.58 -40.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379360843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.620 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds