Wall clock time and date at job start Mon Mar 30 2020 03:01:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.47192 * 2 1
4 4 C 1.50693 * 109.47009 * 179.97438 * 3 2 1
5 5 N 1.27569 * 124.80871 * 90.02808 * 4 3 2
6 6 N 1.37802 * 116.54854 * 179.97438 * 5 4 3
7 7 H 0.97000 * 122.97782 * 179.97438 * 6 5 4
8 8 C 1.35586 * 114.05236 * 0.02562 * 6 5 4
9 9 N 1.31086 * 125.81454 * 179.97438 * 8 6 5
10 10 C 1.46506 * 119.99805 * 0.02562 * 9 8 6
11 11 C 1.50704 * 109.46621 * 120.00442 * 10 9 8
12 12 H 1.07996 * 120.00373 * 359.97438 * 11 10 9
13 13 C 1.37877 * 119.99682 * 179.97438 * 11 10 9
14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 10
15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 10
16 16 H 1.48505 * 109.47101 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.47244 * 119.99846 * 15 13 11
18 18 H 1.48493 * 109.47383 * 240.00241 * 15 13 11
19 19 S 1.75880 * 124.80984 * 270.27970 * 4 3 2
20 20 H 1.08996 * 109.47363 * 300.00133 * 1 2 3
21 21 H 1.08999 * 109.47017 * 60.00768 * 1 2 3
22 22 H 1.09009 * 109.47291 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47363 * 239.99867 * 2 1 3
24 24 H 1.09004 * 109.46930 * 119.99718 * 2 1 3
25 25 H 1.09003 * 109.46785 * 59.99515 * 3 2 1
26 26 H 1.08996 * 109.46414 * 300.00068 * 3 2 1
27 27 H 1.08998 * 109.47174 * 239.99778 * 10 9 8
28 28 H 1.08995 * 109.47304 * 0.02562 * 10 9 8
29 29 H 0.97000 * 119.99941 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5469 1.4425 0.0006
5 7 4.2756 1.4428 -1.0465
6 7 5.6392 1.4433 -0.8479
7 1 6.2789 1.4432 -1.5771
8 6 6.0077 1.4427 0.4569
9 7 7.2391 1.4425 0.9062
10 6 8.3621 1.4434 -0.0346
11 6 9.2033 2.6738 0.1886
12 1 8.9286 3.3842 0.9542
13 6 10.3235 2.8925 -0.5848
14 7 10.6578 2.0277 -1.5176
15 14 11.3658 4.4179 -0.3088
16 1 10.7798 5.2255 0.7911
17 1 12.7474 4.0140 0.0563
18 1 11.3991 5.2266 -1.5538
19 16 4.5503 1.4356 1.4451
20 1 -0.3634 0.5138 0.8899
21 1 -0.3633 0.5137 -0.8900
22 1 -0.3634 -1.0277 -0.0005
23 1 1.8933 -0.5138 -0.8899
24 1 1.8933 -0.5138 0.8900
25 1 1.6766 1.9564 0.8900
26 1 1.6766 1.9562 -0.8900
27 1 8.9708 0.5534 0.1252
28 1 7.9807 1.4447 -1.0556
29 1 11.4457 2.1818 -2.0620
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379360843.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:54
Heat of formation + Delta-G solvation = 53.258019 kcal
Electronic energy + Delta-G solvation = -12922.456655 eV
Core-core repulsion = 10586.576323 eV
Total energy + Delta-G solvation = -2335.880333 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.45723 -36.01290 -34.47930 -32.63419 -30.61348 -27.77640 -26.99160 -24.05636
-22.44531 -21.56778 -19.43765 -18.54814 -16.58475 -16.37341 -15.20231 -14.90425
-14.70266 -14.41469 -13.65856 -13.38423 -12.67305 -12.54378 -12.33369 -12.03284
-11.70836 -11.49649 -11.06591 -10.92229 -10.79386 -10.54855 -10.26736 -10.06642
-9.52680 -9.19325 -8.78000 -8.38514 -7.05490 -6.14684 -4.20073 1.32741
1.77867 1.93760 2.85647 3.03130 3.24814 3.31927 3.38881 4.35747
4.60166 4.80309 4.83817 5.13373 5.18378 5.36049 5.50371 5.58953
5.65186 5.88159 5.94223 6.09254 6.11137 6.93127 7.18467 7.34472
7.79412 7.98501 8.11456 8.62138 8.90607 9.45261 10.93467
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.068400 B = 0.005130 C = 0.005042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 409.261025 B = 5456.952173 C = 5551.681490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.121 4.121
3 C -0.030 4.030
4 C 0.043 3.957
5 N -0.224 5.224
6 N -0.557 5.557
7 H 0.443 0.557
8 C 0.281 3.719
9 N -0.504 5.504
10 C 0.190 3.810
11 C -0.510 4.510
12 H 0.065 0.935
13 C 0.056 3.944
14 N -0.896 5.896
15 Si 0.906 3.094
16 H -0.271 1.271
17 H -0.281 1.281
18 H -0.283 1.283
19 S 0.047 5.953
20 H 0.056 0.944
21 H 0.056 0.944
22 H 0.056 0.944
23 H 0.068 0.932
24 H 0.069 0.931
25 H 0.091 0.909
26 H 0.093 0.907
27 H 0.049 0.951
28 H -0.005 1.005
29 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.554 -2.539 2.035 18.837
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.160 4.160
3 C -0.071 4.071
4 C -0.260 4.260
5 N -0.038 5.038
6 N -0.299 5.299
7 H 0.291 0.709
8 C -0.109 4.109
9 N -0.233 5.233
10 C 0.060 3.940
11 C -0.548 4.548
12 H 0.083 0.917
13 C -0.146 4.146
14 N -0.535 5.535
15 Si 0.733 3.267
16 H -0.195 1.195
17 H -0.207 1.207
18 H -0.209 1.209
19 S 0.277 5.723
20 H 0.075 0.925
21 H 0.075 0.925
22 H 0.075 0.925
23 H 0.087 0.913
24 H 0.088 0.912
25 H 0.109 0.891
26 H 0.111 0.889
27 H 0.066 0.934
28 H 0.013 0.987
29 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -18.032 -2.577 2.944 18.452
hybrid contribution 1.486 0.792 -1.728 2.413
sum -16.546 -1.785 1.216 16.686
Atomic orbital electron populations
1.21757 0.95090 1.01958 1.02007 1.21544 0.96013 0.95247 1.03224
1.20199 0.83639 0.98838 1.04455 1.27376 1.00792 1.06367 0.91448
1.73040 0.91191 1.13567 1.26014 1.46680 1.01196 1.74878 1.07149
0.70860 1.24674 0.98977 1.02979 0.84251 1.72925 0.95930 1.18408
1.35994 1.19747 0.86987 0.98935 0.88340 1.21099 1.09101 1.05932
1.18718 0.91683 1.25026 0.97355 0.97263 0.94914 1.69958 1.26483
1.35754 1.21327 0.86309 0.79938 0.82320 0.78147 1.19530 1.20692
1.20883 1.85342 0.93791 1.86432 1.06693 0.92460 0.92518 0.92453
0.91306 0.91212 0.89081 0.88899 0.93379 0.98677 0.92648
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 15
2 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 15
3 C -0.03 -0.28 5.82 -27.88 -0.16 -0.44 15
4 C 0.04 0.61 6.84 -14.05 -0.10 0.51 15
5 N -0.22 -3.74 11.96 32.97 0.39 -3.35 15
6 N -0.56 -10.90 6.79 30.42 0.21 -10.69 15
7 H 0.44 8.81 7.03 -184.30 -1.30 7.51 15
8 C 0.28 5.94 8.29 -89.39 -0.74 5.20 15
9 N -0.50 -12.54 10.64 -62.56 -0.67 -13.21 15
10 C 0.19 5.21 6.14 -5.19 -0.03 5.17 15
11 C -0.51 -15.01 9.39 -34.44 -0.32 -15.33 15
12 H 0.06 1.94 7.81 -52.49 -0.41 1.53 15
13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15
14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 15
15 Si 0.91 22.01 29.54 -169.99 -5.02 16.99 15
16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15
17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15
18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15
19 S 0.05 0.77 23.35 -107.50 -2.51 -1.74 15
20 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 15
21 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 15
22 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 15
23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15
24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15
25 H 0.09 0.69 8.14 -51.93 -0.42 0.26 15
26 H 0.09 0.79 8.14 -51.93 -0.42 0.36 15
27 H 0.05 1.40 8.14 -51.93 -0.42 0.98 15
28 H 0.00 -0.12 5.98 -51.93 -0.31 -0.43 15
29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15
LS Contribution 268.91 15.07 4.05 4.05
Total: -1.00 -31.78 268.91 -8.58 -40.36
By element:
Atomic # 1 Polarization: 3.10 SS G_CDS: -4.53 Total: -1.43 kcal
Atomic # 6 Polarization: -3.87 SS G_CDS: -1.24 Total: -5.11 kcal
Atomic # 7 Polarization: -53.79 SS G_CDS: 0.67 Total: -53.12 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -31.78 -8.58 -40.36 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379360843.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.620 kcal
(2) G-P(sol) polarization free energy of solvation -31.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds