Wall clock time and date at job start Mon Mar 30 2020 03:01:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.47192 * 2 1
4 4 C 1.50693 * 109.47009 * 179.97438 * 3 2 1
5 5 N 1.27569 * 124.80871 * 90.02808 * 4 3 2
6 6 N 1.37802 * 116.54854 * 179.97438 * 5 4 3
7 7 H 0.97000 * 122.97782 * 179.97438 * 6 5 4
8 8 C 1.35586 * 114.05236 * 0.02562 * 6 5 4
9 9 N 1.31086 * 125.81454 * 179.97438 * 8 6 5
10 10 C 1.46506 * 119.99805 * 0.02562 * 9 8 6
11 11 C 1.50704 * 109.46621 * 120.00442 * 10 9 8
12 12 H 1.07996 * 120.00373 * 359.97438 * 11 10 9
13 13 C 1.37877 * 119.99682 * 179.97438 * 11 10 9
14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 10
15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 10
16 16 H 1.48505 * 109.47101 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.47244 * 119.99846 * 15 13 11
18 18 H 1.48493 * 109.47383 * 240.00241 * 15 13 11
19 19 S 1.75880 * 124.80984 * 270.27970 * 4 3 2
20 20 H 1.08996 * 109.47363 * 300.00133 * 1 2 3
21 21 H 1.08999 * 109.47017 * 60.00768 * 1 2 3
22 22 H 1.09009 * 109.47291 * 179.97438 * 1 2 3
23 23 H 1.08996 * 109.47363 * 239.99867 * 2 1 3
24 24 H 1.09004 * 109.46930 * 119.99718 * 2 1 3
25 25 H 1.09003 * 109.46785 * 59.99515 * 3 2 1
26 26 H 1.08996 * 109.46414 * 300.00068 * 3 2 1
27 27 H 1.08998 * 109.47174 * 239.99778 * 10 9 8
28 28 H 1.08995 * 109.47304 * 0.02562 * 10 9 8
29 29 H 0.97000 * 119.99941 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5469 1.4425 0.0006
5 7 4.2756 1.4428 -1.0465
6 7 5.6392 1.4433 -0.8479
7 1 6.2789 1.4432 -1.5771
8 6 6.0077 1.4427 0.4569
9 7 7.2391 1.4425 0.9062
10 6 8.3621 1.4434 -0.0346
11 6 9.2033 2.6738 0.1886
12 1 8.9286 3.3842 0.9542
13 6 10.3235 2.8925 -0.5848
14 7 10.6578 2.0277 -1.5176
15 14 11.3658 4.4179 -0.3088
16 1 10.7798 5.2255 0.7911
17 1 12.7474 4.0140 0.0563
18 1 11.3991 5.2266 -1.5538
19 16 4.5503 1.4356 1.4451
20 1 -0.3634 0.5138 0.8899
21 1 -0.3633 0.5137 -0.8900
22 1 -0.3634 -1.0277 -0.0005
23 1 1.8933 -0.5138 -0.8899
24 1 1.8933 -0.5138 0.8900
25 1 1.6766 1.9564 0.8900
26 1 1.6766 1.9562 -0.8900
27 1 8.9708 0.5534 0.1252
28 1 7.9807 1.4447 -1.0556
29 1 11.4457 2.1818 -2.0620
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379360843.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:01:53
Heat of formation + Delta-G solvation = 30.875506 kcal
Electronic energy + Delta-G solvation = -12923.427234 eV
Core-core repulsion = 10586.576323 eV
Total energy + Delta-G solvation = -2336.850911 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.91679 -37.34798 -35.81606 -34.59664 -31.98089 -29.61313 -28.09981 -25.94222
-23.83309 -22.63446 -20.75812 -19.97574 -18.63033 -18.21701 -16.60285 -16.33212
-15.97075 -15.58613 -15.14592 -14.69560 -14.42685 -14.08337 -13.55946 -13.09039
-12.92267 -12.77363 -12.66682 -12.40520 -12.28970 -11.94686 -11.65803 -11.44755
-11.33770 -10.83956 -10.61409 -10.32944 -8.73679 -8.28419 -6.48948 -0.15222
0.48271 0.51101 1.17435 1.34069 1.35192 1.49713 1.60734 2.32331
2.95954 3.44512 3.98516 4.14497 4.15946 4.37900 4.70525 4.78301
4.84483 4.87186 5.03800 5.12484 5.32129 5.36600 5.50561 5.54761
5.61221 5.96540 6.52394 6.62742 6.88847 7.23324 8.75055
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.068400 B = 0.005130 C = 0.005042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 409.261025 B = 5456.952173 C = 5551.681490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.119 4.119
3 C -0.032 4.032
4 C 0.069 3.931
5 N -0.246 5.246
6 N -0.569 5.569
7 H 0.436 0.564
8 C 0.277 3.723
9 N -0.556 5.556
10 C 0.204 3.796
11 C -0.536 4.536
12 H 0.053 0.947
13 C 0.007 3.993
14 N -0.926 5.926
15 Si 0.979 3.021
16 H -0.269 1.269
17 H -0.270 1.270
18 H -0.271 1.271
19 S 0.101 5.899
20 H 0.069 0.931
21 H 0.062 0.938
22 H 0.060 0.940
23 H 0.056 0.944
24 H 0.068 0.932
25 H 0.121 0.879
26 H 0.111 0.889
27 H 0.014 0.986
28 H -0.014 1.014
29 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.830 -1.561 2.556 21.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.159 4.159
3 C -0.073 4.073
4 C -0.234 4.234
5 N -0.059 5.059
6 N -0.307 5.307
7 H 0.283 0.717
8 C -0.112 4.112
9 N -0.288 5.288
10 C 0.074 3.926
11 C -0.575 4.575
12 H 0.071 0.929
13 C -0.193 4.193
14 N -0.565 5.565
15 Si 0.802 3.198
16 H -0.193 1.193
17 H -0.195 1.195
18 H -0.196 1.196
19 S 0.332 5.668
20 H 0.088 0.912
21 H 0.081 0.919
22 H 0.079 0.921
23 H 0.075 0.925
24 H 0.087 0.913
25 H 0.139 0.861
26 H 0.129 0.871
27 H 0.031 0.969
28 H 0.004 0.996
29 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -20.359 -1.610 3.454 20.712
hybrid contribution 1.884 0.423 -1.872 2.689
sum -18.475 -1.187 1.582 18.580
Atomic orbital electron populations
1.21730 0.93148 1.02588 1.02947 1.21541 0.97609 0.94090 1.02634
1.20604 0.79710 1.00215 1.06763 1.28483 1.02653 1.02209 0.90029
1.73201 0.89499 1.16557 1.26615 1.46839 1.02678 1.74755 1.06474
0.71680 1.25588 0.99827 0.99689 0.86061 1.72896 0.96585 1.24088
1.35200 1.19305 0.87959 0.96865 0.88513 1.21343 1.10400 1.06745
1.18979 0.92917 1.25978 0.98369 1.00621 0.94284 1.70060 1.27084
1.37505 1.21895 0.85201 0.78120 0.78101 0.78397 1.19291 1.19534
1.19607 1.85211 0.90520 1.85097 1.06002 0.91220 0.91902 0.92075
0.92531 0.91346 0.86133 0.87129 0.96859 0.99639 0.92082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 15
2 C -0.12 -1.61 5.92 30.59 0.18 -1.43 15
3 C -0.03 -0.47 5.82 29.85 0.17 -0.29 15
4 C 0.07 1.77 6.84 88.73 0.61 2.38 15
5 N -0.25 -7.93 11.96 -48.93 -0.59 -8.51 15
6 N -0.57 -22.59 6.79 -57.66 -0.39 -22.98 15
7 H 0.44 18.18 7.03 -214.77 -1.51 16.67 15
8 C 0.28 11.86 8.29 179.92 1.49 13.35 15
9 N -0.56 -28.78 10.64 -351.83 -3.74 -32.52 15
10 C 0.20 11.86 6.14 85.63 0.53 12.39 15
11 C -0.54 -32.78 9.39 25.60 0.24 -32.54 15
12 H 0.05 3.26 7.81 -2.91 -0.02 3.24 15
13 C 0.01 0.40 5.46 84.65 0.46 0.86 15
14 N -0.93 -56.29 13.29 21.45 0.28 -56.01 15
15 Si 0.98 45.59 29.54 68.60 2.03 47.61 15
16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15
17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15
18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15
19 S 0.10 3.07 23.35 -56.49 -1.32 1.75 15
20 H 0.07 0.48 8.14 -2.39 -0.02 0.46 15
21 H 0.06 0.51 8.14 -2.39 -0.02 0.49 15
22 H 0.06 0.54 8.14 -2.38 -0.02 0.52 15
23 H 0.06 0.91 8.14 -2.39 -0.02 0.90 15
24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 15
25 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15
26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15
27 H 0.01 0.85 8.14 -2.39 -0.02 0.83 15
28 H -0.01 -0.82 5.98 -2.39 -0.01 -0.83 15
29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15
Total: -1.00 -70.95 268.91 0.31 -70.63
By element:
Atomic # 1 Polarization: 6.28 SS G_CDS: -0.35 Total: 5.92 kcal
Atomic # 6 Polarization: -10.29 SS G_CDS: 4.39 Total: -5.89 kcal
Atomic # 7 Polarization: -115.59 SS G_CDS: -4.44 Total: -120.03 kcal
Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal
Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.75 kcal
Total: -70.95 0.31 -70.63 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379360843.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.508 kcal
(2) G-P(sol) polarization free energy of solvation -70.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.563 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.876 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds