Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47192 * 2 1 4 4 C 1.50693 * 109.47009 * 179.97438 * 3 2 1 5 5 N 1.27569 * 124.80871 * 90.02808 * 4 3 2 6 6 N 1.37802 * 116.54854 * 179.97438 * 5 4 3 7 7 H 0.97000 * 122.97782 * 179.97438 * 6 5 4 8 8 C 1.35586 * 114.05236 * 0.02562 * 6 5 4 9 9 N 1.31086 * 125.81454 * 179.97438 * 8 6 5 10 10 C 1.46506 * 119.99805 * 0.02562 * 9 8 6 11 11 C 1.50704 * 109.46621 * 120.00442 * 10 9 8 12 12 H 1.07996 * 120.00373 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99682 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47101 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47244 * 119.99846 * 15 13 11 18 18 H 1.48493 * 109.47383 * 240.00241 * 15 13 11 19 19 S 1.75880 * 124.80984 * 270.27970 * 4 3 2 20 20 H 1.08996 * 109.47363 * 300.00133 * 1 2 3 21 21 H 1.08999 * 109.47017 * 60.00768 * 1 2 3 22 22 H 1.09009 * 109.47291 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47363 * 239.99867 * 2 1 3 24 24 H 1.09004 * 109.46930 * 119.99718 * 2 1 3 25 25 H 1.09003 * 109.46785 * 59.99515 * 3 2 1 26 26 H 1.08996 * 109.46414 * 300.00068 * 3 2 1 27 27 H 1.08998 * 109.47174 * 239.99778 * 10 9 8 28 28 H 1.08995 * 109.47304 * 0.02562 * 10 9 8 29 29 H 0.97000 * 119.99941 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.2756 1.4428 -1.0465 6 7 5.6392 1.4433 -0.8479 7 1 6.2789 1.4432 -1.5771 8 6 6.0077 1.4427 0.4569 9 7 7.2391 1.4425 0.9062 10 6 8.3621 1.4434 -0.0346 11 6 9.2033 2.6738 0.1886 12 1 8.9286 3.3842 0.9542 13 6 10.3235 2.8925 -0.5848 14 7 10.6578 2.0277 -1.5176 15 14 11.3658 4.4179 -0.3088 16 1 10.7798 5.2255 0.7911 17 1 12.7474 4.0140 0.0563 18 1 11.3991 5.2266 -1.5538 19 16 4.5503 1.4356 1.4451 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9562 -0.8900 27 1 8.9708 0.5534 0.1252 28 1 7.9807 1.4447 -1.0556 29 1 11.4457 2.1818 -2.0620 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379360843.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = 30.875506 kcal Electronic energy + Delta-G solvation = -12923.427234 eV Core-core repulsion = 10586.576323 eV Total energy + Delta-G solvation = -2336.850911 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91679 -37.34798 -35.81606 -34.59664 -31.98089 -29.61313 -28.09981 -25.94222 -23.83309 -22.63446 -20.75812 -19.97574 -18.63033 -18.21701 -16.60285 -16.33212 -15.97075 -15.58613 -15.14592 -14.69560 -14.42685 -14.08337 -13.55946 -13.09039 -12.92267 -12.77363 -12.66682 -12.40520 -12.28970 -11.94686 -11.65803 -11.44755 -11.33770 -10.83956 -10.61409 -10.32944 -8.73679 -8.28419 -6.48948 -0.15222 0.48271 0.51101 1.17435 1.34069 1.35192 1.49713 1.60734 2.32331 2.95954 3.44512 3.98516 4.14497 4.15946 4.37900 4.70525 4.78301 4.84483 4.87186 5.03800 5.12484 5.32129 5.36600 5.50561 5.54761 5.61221 5.96540 6.52394 6.62742 6.88847 7.23324 8.75055 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.068400 B = 0.005130 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.261025 B = 5456.952173 C = 5551.681490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.032 4.032 4 C 0.069 3.931 5 N -0.246 5.246 6 N -0.569 5.569 7 H 0.436 0.564 8 C 0.277 3.723 9 N -0.556 5.556 10 C 0.204 3.796 11 C -0.536 4.536 12 H 0.053 0.947 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.979 3.021 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.271 1.271 19 S 0.101 5.899 20 H 0.069 0.931 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.014 0.986 28 H -0.014 1.014 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.830 -1.561 2.556 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.073 4.073 4 C -0.234 4.234 5 N -0.059 5.059 6 N -0.307 5.307 7 H 0.283 0.717 8 C -0.112 4.112 9 N -0.288 5.288 10 C 0.074 3.926 11 C -0.575 4.575 12 H 0.071 0.929 13 C -0.193 4.193 14 N -0.565 5.565 15 Si 0.802 3.198 16 H -0.193 1.193 17 H -0.195 1.195 18 H -0.196 1.196 19 S 0.332 5.668 20 H 0.088 0.912 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.129 0.871 27 H 0.031 0.969 28 H 0.004 0.996 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.359 -1.610 3.454 20.712 hybrid contribution 1.884 0.423 -1.872 2.689 sum -18.475 -1.187 1.582 18.580 Atomic orbital electron populations 1.21730 0.93148 1.02588 1.02947 1.21541 0.97609 0.94090 1.02634 1.20604 0.79710 1.00215 1.06763 1.28483 1.02653 1.02209 0.90029 1.73201 0.89499 1.16557 1.26615 1.46839 1.02678 1.74755 1.06474 0.71680 1.25588 0.99827 0.99689 0.86061 1.72896 0.96585 1.24088 1.35200 1.19305 0.87959 0.96865 0.88513 1.21343 1.10400 1.06745 1.18979 0.92917 1.25978 0.98369 1.00621 0.94284 1.70060 1.27084 1.37505 1.21895 0.85201 0.78120 0.78101 0.78397 1.19291 1.19534 1.19607 1.85211 0.90520 1.85097 1.06002 0.91220 0.91902 0.92075 0.92531 0.91346 0.86133 0.87129 0.96859 0.99639 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 15 2 C -0.12 -1.61 5.92 30.59 0.18 -1.43 15 3 C -0.03 -0.47 5.82 29.85 0.17 -0.29 15 4 C 0.07 1.77 6.84 88.73 0.61 2.38 15 5 N -0.25 -7.93 11.96 -48.93 -0.59 -8.51 15 6 N -0.57 -22.59 6.79 -57.66 -0.39 -22.98 15 7 H 0.44 18.18 7.03 -214.77 -1.51 16.67 15 8 C 0.28 11.86 8.29 179.92 1.49 13.35 15 9 N -0.56 -28.78 10.64 -351.83 -3.74 -32.52 15 10 C 0.20 11.86 6.14 85.63 0.53 12.39 15 11 C -0.54 -32.78 9.39 25.60 0.24 -32.54 15 12 H 0.05 3.26 7.81 -2.91 -0.02 3.24 15 13 C 0.01 0.40 5.46 84.65 0.46 0.86 15 14 N -0.93 -56.29 13.29 21.45 0.28 -56.01 15 15 Si 0.98 45.59 29.54 68.60 2.03 47.61 15 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 19 S 0.10 3.07 23.35 -56.49 -1.32 1.75 15 20 H 0.07 0.48 8.14 -2.39 -0.02 0.46 15 21 H 0.06 0.51 8.14 -2.39 -0.02 0.49 15 22 H 0.06 0.54 8.14 -2.38 -0.02 0.52 15 23 H 0.06 0.91 8.14 -2.39 -0.02 0.90 15 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 27 H 0.01 0.85 8.14 -2.39 -0.02 0.83 15 28 H -0.01 -0.82 5.98 -2.39 -0.01 -0.83 15 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 Total: -1.00 -70.95 268.91 0.31 -70.63 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -0.35 Total: 5.92 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.39 Total: -5.89 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -4.44 Total: -120.03 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.32 Total: 1.75 kcal Total: -70.95 0.31 -70.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379360843.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.508 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds