Wall clock time and date at job start Mon Mar 30 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46829 * 89.97637 * 6 5 4 8 8 C 1.46898 * 110.99841 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47304 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47189 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99978 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99852 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99848 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99909 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47390 * 89.99947 * 14 12 10 16 16 H 1.48497 * 109.47174 * 209.99572 * 14 12 10 17 17 H 1.48495 * 109.47194 * 329.99576 * 14 12 10 18 18 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 19 19 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 20 20 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 21 21 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 22 22 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 23 23 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 24 24 H 1.00904 * 111.00180 * 303.95307 * 7 6 5 25 25 H 1.08996 * 109.47206 * 299.99805 * 8 7 6 26 26 H 1.09003 * 109.47142 * 60.00228 * 8 7 6 27 27 H 1.09006 * 109.47151 * 300.00627 * 9 8 7 28 28 H 1.09003 * 109.46695 * 60.00125 * 9 8 7 29 29 H 0.97001 * 119.99594 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 7 5.7821 -1.0145 1.4050 8 6 7.1748 -1.4795 1.4513 9 6 7.6164 -1.6230 2.9092 10 6 9.0453 -2.0995 2.9567 11 1 9.5847 -2.2812 2.0389 12 6 9.6641 -2.3033 4.1719 13 7 9.0073 -2.0814 5.2896 14 14 11.4354 -2.8931 4.2307 15 1 12.3474 -1.7211 4.2439 16 1 11.6481 -3.6994 5.4595 17 1 11.7192 -3.7277 3.0358 18 16 2.5060 -1.3906 0.0078 19 1 -0.3635 -0.0004 -1.0276 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3633 0.8901 0.5135 22 1 5.3883 -1.8252 -0.4927 23 1 5.9514 -0.1366 -0.4961 24 1 5.6711 -0.1527 1.9180 25 1 7.2524 -2.4448 0.9511 26 1 7.8162 -0.7564 0.9474 27 1 7.5389 -0.6575 3.4091 28 1 6.9751 -2.3459 3.4136 29 1 9.4428 -2.2245 6.1445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392036464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:57 Heat of formation + Delta-G solvation = 50.057834 kcal Electronic energy + Delta-G solvation = -12734.390070 eV Core-core repulsion = 10398.370967 eV Total energy + Delta-G solvation = -2336.019103 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28806 -36.37162 -33.59304 -32.71865 -30.59481 -28.52614 -26.19100 -24.46228 -23.13851 -20.70929 -19.68201 -19.32726 -16.41281 -15.90803 -15.76760 -15.11692 -14.45937 -14.13655 -13.74892 -13.39877 -13.17604 -12.90782 -12.51305 -12.24491 -12.07840 -11.12586 -10.96972 -10.61045 -10.47090 -10.25757 -10.04419 -9.81884 -9.69315 -9.42375 -9.17481 -8.38309 -8.04715 -6.02057 -4.05158 0.38083 0.87427 1.36408 2.51559 3.31159 3.37391 3.40365 3.88974 4.36854 4.46418 4.76119 4.83736 5.05069 5.10633 5.34002 5.36264 5.55724 5.56619 5.66749 6.20585 6.27746 6.87650 7.26138 7.62747 7.70060 7.83947 8.02275 8.38449 8.53004 9.01795 9.58796 11.09316 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.072968 B = 0.004246 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.637399 B = 6593.152281 C = 6657.413237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.035 4.035 3 N -0.264 5.264 4 N -0.263 5.263 5 C -0.001 4.001 6 C 0.135 3.865 7 N -0.686 5.686 8 C 0.066 3.934 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 S 0.191 5.809 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.344 0.656 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.375 0.534 -11.618 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.314 4.314 3 N -0.102 5.102 4 N -0.101 5.101 5 C -0.281 4.281 6 C 0.002 3.998 7 N -0.319 5.319 8 C -0.062 4.062 9 C -0.012 4.012 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 S 0.434 5.566 19 H 0.106 0.894 20 H 0.103 0.897 21 H 0.110 0.890 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.162 0.838 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.555 0.243 -11.366 19.267 hybrid contribution 1.495 0.621 -0.068 1.620 sum -14.060 0.864 -11.434 18.143 Atomic orbital electron populations 1.20337 0.84152 1.04622 1.04061 1.29221 1.04296 0.92519 1.05330 1.71425 0.97017 1.27020 1.14775 1.71451 1.06422 1.17256 1.14936 1.29248 1.03428 0.92252 1.03133 1.20424 0.84991 1.00764 0.93665 1.60718 1.25064 1.36815 1.09281 1.22235 0.83653 0.98296 1.01969 1.19076 0.95839 0.97597 0.88714 1.21144 0.97470 1.45219 0.92326 0.92640 1.25016 0.98113 0.95561 0.95730 1.69977 1.36828 1.48970 0.97367 0.86559 0.84937 0.78766 0.77515 1.20678 1.21185 1.19863 1.83702 0.97326 1.11258 1.64330 0.89371 0.89738 0.89003 0.88723 0.91937 0.83775 0.91855 0.95971 0.96672 0.95538 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.48 36.00 0.38 -0.12 15 2 C -0.03 -0.41 7.53 -13.30 -0.10 -0.51 15 3 N -0.26 -4.03 11.66 32.58 0.38 -3.65 15 4 N -0.26 -4.30 11.66 32.58 0.38 -3.92 15 5 C 0.00 -0.02 7.04 -13.30 -0.09 -0.11 15 6 C 0.13 1.94 6.28 -4.97 -0.03 1.91 15 7 N -0.69 -12.16 6.49 -115.05 -0.75 -12.91 15 8 C 0.07 1.35 5.62 -3.82 -0.02 1.33 15 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 15 10 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 15 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 13 N -0.89 -26.88 13.29 55.43 0.74 -26.15 15 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 18 S 0.19 2.15 23.04 -107.50 -2.48 -0.32 15 19 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 20 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.34 6.29 8.72 -39.29 -0.34 5.95 15 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 15 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 LS Contribution 271.81 15.07 4.10 4.10 Total: -1.00 -32.01 271.81 -6.77 -38.78 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.69 Total: -2.01 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.43 Total: -10.46 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.75 Total: -46.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.48 Total: -0.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.01 -6.77 -38.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392036464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.837 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds