Wall clock time and date at job start Mon Mar 30 2020 02:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.29414 * 125.70010 * 2 1
4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1
5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2
6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3
7 7 N 1.46901 * 109.46829 * 89.97637 * 6 5 4
8 8 C 1.46898 * 110.99841 * 179.97438 * 7 6 5
9 9 C 1.53005 * 109.47304 * 179.97438 * 8 7 6
10 10 C 1.50697 * 109.47189 * 180.02562 * 9 8 7
11 11 H 1.07997 * 119.99978 * 0.02562 * 10 9 8
12 12 C 1.37882 * 119.99852 * 180.02562 * 10 9 8
13 13 N 1.31519 * 119.99848 * 359.97438 * 12 10 9
14 14 Si 1.86794 * 119.99909 * 180.02562 * 12 10 9
15 15 H 1.48507 * 109.47390 * 89.99947 * 14 12 10
16 16 H 1.48497 * 109.47174 * 209.99572 * 14 12 10
17 17 H 1.48495 * 109.47194 * 329.99576 * 14 12 10
18 18 S 1.71215 * 108.61179 * 0.02562 * 5 4 3
19 19 H 1.09001 * 109.47835 * 90.02159 * 1 2 3
20 20 H 1.09007 * 109.47583 * 210.02562 * 1 2 3
21 21 H 1.08996 * 109.47200 * 330.02073 * 1 2 3
22 22 H 1.09000 * 109.47136 * 209.97649 * 6 5 4
23 23 H 1.09001 * 109.46989 * 329.97993 * 6 5 4
24 24 H 1.00904 * 111.00180 * 303.95307 * 7 6 5
25 25 H 1.08996 * 109.47206 * 299.99805 * 8 7 6
26 26 H 1.09003 * 109.47142 * 60.00228 * 8 7 6
27 27 H 1.09006 * 109.47151 * 300.00627 * 9 8 7
28 28 H 1.09003 * 109.46695 * 60.00125 * 9 8 7
29 29 H 0.97001 * 119.99594 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2621 1.0509 0.0000
4 7 3.5097 0.8484 0.0052
5 6 3.8935 -0.3875 0.0104
6 6 5.3232 -0.8643 0.0177
7 7 5.7821 -1.0145 1.4050
8 6 7.1748 -1.4795 1.4513
9 6 7.6164 -1.6230 2.9092
10 6 9.0453 -2.0995 2.9567
11 1 9.5847 -2.2812 2.0389
12 6 9.6641 -2.3033 4.1719
13 7 9.0073 -2.0814 5.2896
14 14 11.4354 -2.8931 4.2307
15 1 12.3474 -1.7211 4.2439
16 1 11.6481 -3.6994 5.4595
17 1 11.7192 -3.7277 3.0358
18 16 2.5060 -1.3906 0.0078
19 1 -0.3635 -0.0004 -1.0276
20 1 -0.3634 -0.8898 0.5142
21 1 -0.3633 0.8901 0.5135
22 1 5.3883 -1.8252 -0.4927
23 1 5.9514 -0.1366 -0.4961
24 1 5.6711 -0.1527 1.9180
25 1 7.2524 -2.4448 0.9511
26 1 7.8162 -0.7564 0.9474
27 1 7.5389 -0.6575 3.4091
28 1 6.9751 -2.3459 3.4136
29 1 9.4428 -2.2245 6.1445
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000392036464.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:57
Heat of formation + Delta-G solvation = 50.057834 kcal
Electronic energy + Delta-G solvation = -12734.390070 eV
Core-core repulsion = 10398.370967 eV
Total energy + Delta-G solvation = -2336.019103 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.28806 -36.37162 -33.59304 -32.71865 -30.59481 -28.52614 -26.19100 -24.46228
-23.13851 -20.70929 -19.68201 -19.32726 -16.41281 -15.90803 -15.76760 -15.11692
-14.45937 -14.13655 -13.74892 -13.39877 -13.17604 -12.90782 -12.51305 -12.24491
-12.07840 -11.12586 -10.96972 -10.61045 -10.47090 -10.25757 -10.04419 -9.81884
-9.69315 -9.42375 -9.17481 -8.38309 -8.04715 -6.02057 -4.05158 0.38083
0.87427 1.36408 2.51559 3.31159 3.37391 3.40365 3.88974 4.36854
4.46418 4.76119 4.83736 5.05069 5.10633 5.34002 5.36264 5.55724
5.56619 5.66749 6.20585 6.27746 6.87650 7.26138 7.62747 7.70060
7.83947 8.02275 8.38449 8.53004 9.01795 9.58796 11.09316
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.072968 B = 0.004246 C = 0.004205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 383.637399 B = 6593.152281 C = 6657.413237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.035 4.035
3 N -0.264 5.264
4 N -0.263 5.263
5 C -0.001 4.001
6 C 0.135 3.865
7 N -0.686 5.686
8 C 0.066 3.934
9 C 0.025 3.975
10 C -0.523 4.523
11 H 0.055 0.945
12 C 0.057 3.943
13 N -0.893 5.893
14 Si 0.894 3.106
15 H -0.281 1.281
16 H -0.286 1.286
17 H -0.274 1.274
18 S 0.191 5.809
19 H 0.088 0.912
20 H 0.084 0.916
21 H 0.091 0.909
22 H 0.095 0.905
23 H 0.063 0.937
24 H 0.344 0.656
25 H 0.063 0.937
26 H 0.022 0.978
27 H 0.015 0.985
28 H 0.026 0.974
29 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.375 0.534 -11.618 19.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.314 4.314
3 N -0.102 5.102
4 N -0.101 5.101
5 C -0.281 4.281
6 C 0.002 3.998
7 N -0.319 5.319
8 C -0.062 4.062
9 C -0.012 4.012
10 C -0.562 4.562
11 H 0.074 0.926
12 C -0.144 4.144
13 N -0.531 5.531
14 Si 0.722 3.278
15 H -0.207 1.207
16 H -0.212 1.212
17 H -0.199 1.199
18 S 0.434 5.566
19 H 0.106 0.894
20 H 0.103 0.897
21 H 0.110 0.890
22 H 0.113 0.887
23 H 0.081 0.919
24 H 0.162 0.838
25 H 0.081 0.919
26 H 0.040 0.960
27 H 0.033 0.967
28 H 0.045 0.955
29 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -15.555 0.243 -11.366 19.267
hybrid contribution 1.495 0.621 -0.068 1.620
sum -14.060 0.864 -11.434 18.143
Atomic orbital electron populations
1.20337 0.84152 1.04622 1.04061 1.29221 1.04296 0.92519 1.05330
1.71425 0.97017 1.27020 1.14775 1.71451 1.06422 1.17256 1.14936
1.29248 1.03428 0.92252 1.03133 1.20424 0.84991 1.00764 0.93665
1.60718 1.25064 1.36815 1.09281 1.22235 0.83653 0.98296 1.01969
1.19076 0.95839 0.97597 0.88714 1.21144 0.97470 1.45219 0.92326
0.92640 1.25016 0.98113 0.95561 0.95730 1.69977 1.36828 1.48970
0.97367 0.86559 0.84937 0.78766 0.77515 1.20678 1.21185 1.19863
1.83702 0.97326 1.11258 1.64330 0.89371 0.89738 0.89003 0.88723
0.91937 0.83775 0.91855 0.95971 0.96672 0.95538 0.92938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.50 10.48 36.00 0.38 -0.12 15
2 C -0.03 -0.41 7.53 -13.30 -0.10 -0.51 15
3 N -0.26 -4.03 11.66 32.58 0.38 -3.65 15
4 N -0.26 -4.30 11.66 32.58 0.38 -3.92 15
5 C 0.00 -0.02 7.04 -13.30 -0.09 -0.11 15
6 C 0.13 1.94 6.28 -4.97 -0.03 1.91 15
7 N -0.69 -12.16 6.49 -115.05 -0.75 -12.91 15
8 C 0.07 1.35 5.62 -3.82 -0.02 1.33 15
9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 15
10 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 15
11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15
12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15
13 N -0.89 -26.88 13.29 55.43 0.74 -26.15 15
14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15
15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15
16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15
17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15
18 S 0.19 2.15 23.04 -107.50 -2.48 -0.32 15
19 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15
20 H 0.08 0.43 8.14 -51.93 -0.42 0.01 15
21 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15
22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15
23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15
24 H 0.34 6.29 8.72 -39.29 -0.34 5.95 15
25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15
26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15
27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 15
28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15
29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15
LS Contribution 271.81 15.07 4.10 4.10
Total: -1.00 -32.01 271.81 -6.77 -38.78
By element:
Atomic # 1 Polarization: 1.68 SS G_CDS: -3.69 Total: -2.01 kcal
Atomic # 6 Polarization: -10.04 SS G_CDS: -0.43 Total: -10.46 kcal
Atomic # 7 Polarization: -47.37 SS G_CDS: 0.75 Total: -46.62 kcal
Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal
Atomic # 16 Polarization: 2.15 SS G_CDS: -2.48 Total: -0.32 kcal
Total LS contribution 4.10 Total: 4.10 kcal
Total: -32.01 -6.77 -38.78 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000392036464.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.837 kcal
(2) G-P(sol) polarization free energy of solvation -32.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.058 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds