Wall clock time and date at job start Mon Mar 30 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29414 * 125.70010 * 2 1 4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1 5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2 6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46829 * 89.97637 * 6 5 4 8 8 C 1.46898 * 110.99841 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47304 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47189 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99978 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99852 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99848 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99909 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47390 * 89.99947 * 14 12 10 16 16 H 1.48497 * 109.47174 * 209.99572 * 14 12 10 17 17 H 1.48495 * 109.47194 * 329.99576 * 14 12 10 18 18 S 1.71215 * 108.61179 * 0.02562 * 5 4 3 19 19 H 1.09001 * 109.47835 * 90.02159 * 1 2 3 20 20 H 1.09007 * 109.47583 * 210.02562 * 1 2 3 21 21 H 1.08996 * 109.47200 * 330.02073 * 1 2 3 22 22 H 1.09000 * 109.47136 * 209.97649 * 6 5 4 23 23 H 1.09001 * 109.46989 * 329.97993 * 6 5 4 24 24 H 1.00904 * 111.00180 * 303.95307 * 7 6 5 25 25 H 1.08996 * 109.47206 * 299.99805 * 8 7 6 26 26 H 1.09003 * 109.47142 * 60.00228 * 8 7 6 27 27 H 1.09006 * 109.47151 * 300.00627 * 9 8 7 28 28 H 1.09003 * 109.46695 * 60.00125 * 9 8 7 29 29 H 0.97001 * 119.99594 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0509 0.0000 4 7 3.5097 0.8484 0.0052 5 6 3.8935 -0.3875 0.0104 6 6 5.3232 -0.8643 0.0177 7 7 5.7821 -1.0145 1.4050 8 6 7.1748 -1.4795 1.4513 9 6 7.6164 -1.6230 2.9092 10 6 9.0453 -2.0995 2.9567 11 1 9.5847 -2.2812 2.0389 12 6 9.6641 -2.3033 4.1719 13 7 9.0073 -2.0814 5.2896 14 14 11.4354 -2.8931 4.2307 15 1 12.3474 -1.7211 4.2439 16 1 11.6481 -3.6994 5.4595 17 1 11.7192 -3.7277 3.0358 18 16 2.5060 -1.3906 0.0078 19 1 -0.3635 -0.0004 -1.0276 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3633 0.8901 0.5135 22 1 5.3883 -1.8252 -0.4927 23 1 5.9514 -0.1366 -0.4961 24 1 5.6711 -0.1527 1.9180 25 1 7.2524 -2.4448 0.9511 26 1 7.8162 -0.7564 0.9474 27 1 7.5389 -0.6575 3.4091 28 1 6.9751 -2.3459 3.4136 29 1 9.4428 -2.2245 6.1445 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392036464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:56 Heat of formation + Delta-G solvation = 26.335199 kcal Electronic energy + Delta-G solvation = -12735.418761 eV Core-core repulsion = 10398.370967 eV Total energy + Delta-G solvation = -2337.047794 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.32930 -37.82065 -35.29219 -34.06506 -32.06368 -29.92118 -27.45521 -25.93332 -24.53659 -22.51959 -20.71579 -20.33640 -18.52253 -17.15808 -16.98183 -16.44547 -16.21445 -15.48027 -14.95166 -14.47938 -14.23385 -13.97230 -13.84538 -13.74340 -13.27234 -12.96187 -12.84715 -12.43987 -12.00905 -11.56859 -11.40711 -11.32162 -11.19763 -10.72341 -10.60674 -10.56436 -9.48613 -8.20192 -6.31747 -0.58681 -0.05297 0.38397 1.41767 1.43271 1.46476 1.54490 2.41057 2.90239 3.13692 3.34726 3.63368 3.85031 4.17781 4.38549 4.47545 4.57211 4.62749 4.64155 4.75483 5.04496 5.08299 5.42493 5.63595 5.73790 6.01378 6.14618 6.31612 6.85677 7.37703 7.51204 8.92039 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.072968 B = 0.004246 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.637399 B = 6593.152281 C = 6657.413237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.028 4.028 3 N -0.305 5.305 4 N -0.294 5.294 5 C -0.030 4.030 6 C 0.139 3.861 7 N -0.691 5.691 8 C 0.085 3.915 9 C 0.030 3.970 10 C -0.542 4.542 11 H 0.065 0.935 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.969 3.031 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.260 1.260 18 S 0.247 5.753 19 H 0.111 0.889 20 H 0.109 0.891 21 H 0.095 0.905 22 H 0.117 0.883 23 H 0.064 0.936 24 H 0.338 0.662 25 H 0.074 0.926 26 H 0.027 0.973 27 H -0.013 1.013 28 H -0.003 1.003 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -0.567 -12.883 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.307 4.307 3 N -0.143 5.143 4 N -0.133 5.133 5 C -0.309 4.309 6 C 0.007 3.993 7 N -0.323 5.323 8 C -0.044 4.044 9 C -0.007 4.007 10 C -0.581 4.581 11 H 0.083 0.917 12 C -0.200 4.200 13 N -0.573 5.573 14 Si 0.793 3.207 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.184 1.184 18 S 0.491 5.509 19 H 0.129 0.871 20 H 0.127 0.873 21 H 0.113 0.887 22 H 0.135 0.865 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.005 0.995 28 H 0.016 0.984 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.006 -0.859 -12.656 20.423 hybrid contribution 1.475 0.947 0.317 1.781 sum -14.531 0.088 -12.339 19.064 Atomic orbital electron populations 1.20641 0.80917 1.06000 1.05924 1.30003 1.06201 0.92087 1.02385 1.71398 0.97012 1.28680 1.17256 1.71399 1.07475 1.18688 1.15689 1.29183 1.04406 0.92855 1.04478 1.20440 0.85351 1.02044 0.91515 1.60608 1.23285 1.36670 1.11698 1.21855 0.85236 0.99194 0.98096 1.18932 0.94928 0.95008 0.91868 1.21612 0.98604 1.45011 0.92865 0.91664 1.26017 1.03062 0.95626 0.95318 1.70120 1.38989 1.50134 0.98067 0.85387 0.78898 0.78439 0.77940 1.19951 1.20855 1.18414 1.83430 0.94991 1.09545 1.62946 0.87062 0.87257 0.88670 0.86526 0.91765 0.84483 0.90717 0.95513 0.99479 0.98442 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.48 71.23 0.75 -0.08 15 2 C -0.03 -0.61 7.53 88.46 0.67 0.06 15 3 N -0.30 -9.16 11.66 -50.85 -0.59 -9.75 15 4 N -0.29 -9.63 11.66 -50.85 -0.59 -10.22 15 5 C -0.03 -0.84 7.04 88.47 0.62 -0.21 15 6 C 0.14 3.86 6.28 85.56 0.54 4.40 15 7 N -0.69 -24.39 6.49 -517.91 -3.36 -27.75 15 8 C 0.08 3.42 5.62 86.31 0.49 3.91 15 9 C 0.03 1.60 5.23 29.85 0.16 1.75 15 10 C -0.54 -30.62 9.11 25.60 0.23 -30.39 15 11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15 12 C 0.00 -0.14 5.46 84.66 0.46 0.33 15 13 N -0.93 -57.22 13.29 21.45 0.28 -56.93 15 14 Si 0.97 44.06 29.54 68.60 2.03 46.08 15 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 18 S 0.25 5.07 23.04 -56.49 -1.30 3.77 15 19 H 0.11 0.80 8.14 -2.39 -0.02 0.78 15 20 H 0.11 0.71 8.14 -2.38 -0.02 0.69 15 21 H 0.09 1.06 8.14 -2.39 -0.02 1.05 15 22 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.34 12.64 8.72 -89.69 -0.78 11.86 15 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 27 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 15 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 15 29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15 Total: -1.00 -70.03 271.81 0.74 -69.28 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.37 Total: 5.76 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.91 Total: -20.24 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -4.26 Total: -104.66 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal Total: -70.03 0.74 -69.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392036464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.618 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds