Wall clock time and date at job start Mon Mar 30 2020 02:57:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.29414 * 125.70010 * 2 1
4 4 N 1.26396 * 116.47623 * 179.73746 * 3 2 1
5 5 C 1.29409 * 116.47502 * 359.97438 * 4 3 2
6 6 C 1.50707 * 125.69372 * 180.02562 * 5 4 3
7 7 N 1.46901 * 109.46829 * 89.97637 * 6 5 4
8 8 C 1.46898 * 110.99841 * 179.97438 * 7 6 5
9 9 C 1.53005 * 109.47304 * 179.97438 * 8 7 6
10 10 C 1.50697 * 109.47189 * 180.02562 * 9 8 7
11 11 H 1.07997 * 119.99978 * 0.02562 * 10 9 8
12 12 C 1.37882 * 119.99852 * 180.02562 * 10 9 8
13 13 N 1.31519 * 119.99848 * 359.97438 * 12 10 9
14 14 Si 1.86794 * 119.99909 * 180.02562 * 12 10 9
15 15 H 1.48507 * 109.47390 * 89.99947 * 14 12 10
16 16 H 1.48497 * 109.47174 * 209.99572 * 14 12 10
17 17 H 1.48495 * 109.47194 * 329.99576 * 14 12 10
18 18 S 1.71215 * 108.61179 * 0.02562 * 5 4 3
19 19 H 1.09001 * 109.47835 * 90.02159 * 1 2 3
20 20 H 1.09007 * 109.47583 * 210.02562 * 1 2 3
21 21 H 1.08996 * 109.47200 * 330.02073 * 1 2 3
22 22 H 1.09000 * 109.47136 * 209.97649 * 6 5 4
23 23 H 1.09001 * 109.46989 * 329.97993 * 6 5 4
24 24 H 1.00904 * 111.00180 * 303.95307 * 7 6 5
25 25 H 1.08996 * 109.47206 * 299.99805 * 8 7 6
26 26 H 1.09003 * 109.47142 * 60.00228 * 8 7 6
27 27 H 1.09006 * 109.47151 * 300.00627 * 9 8 7
28 28 H 1.09003 * 109.46695 * 60.00125 * 9 8 7
29 29 H 0.97001 * 119.99594 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2621 1.0509 0.0000
4 7 3.5097 0.8484 0.0052
5 6 3.8935 -0.3875 0.0104
6 6 5.3232 -0.8643 0.0177
7 7 5.7821 -1.0145 1.4050
8 6 7.1748 -1.4795 1.4513
9 6 7.6164 -1.6230 2.9092
10 6 9.0453 -2.0995 2.9567
11 1 9.5847 -2.2812 2.0389
12 6 9.6641 -2.3033 4.1719
13 7 9.0073 -2.0814 5.2896
14 14 11.4354 -2.8931 4.2307
15 1 12.3474 -1.7211 4.2439
16 1 11.6481 -3.6994 5.4595
17 1 11.7192 -3.7277 3.0358
18 16 2.5060 -1.3906 0.0078
19 1 -0.3635 -0.0004 -1.0276
20 1 -0.3634 -0.8898 0.5142
21 1 -0.3633 0.8901 0.5135
22 1 5.3883 -1.8252 -0.4927
23 1 5.9514 -0.1366 -0.4961
24 1 5.6711 -0.1527 1.9180
25 1 7.2524 -2.4448 0.9511
26 1 7.8162 -0.7564 0.9474
27 1 7.5389 -0.6575 3.4091
28 1 6.9751 -2.3459 3.4136
29 1 9.4428 -2.2245 6.1445
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000392036464.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:56
Heat of formation + Delta-G solvation = 26.335199 kcal
Electronic energy + Delta-G solvation = -12735.418761 eV
Core-core repulsion = 10398.370967 eV
Total energy + Delta-G solvation = -2337.047794 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-42.32930 -37.82065 -35.29219 -34.06506 -32.06368 -29.92118 -27.45521 -25.93332
-24.53659 -22.51959 -20.71579 -20.33640 -18.52253 -17.15808 -16.98183 -16.44547
-16.21445 -15.48027 -14.95166 -14.47938 -14.23385 -13.97230 -13.84538 -13.74340
-13.27234 -12.96187 -12.84715 -12.43987 -12.00905 -11.56859 -11.40711 -11.32162
-11.19763 -10.72341 -10.60674 -10.56436 -9.48613 -8.20192 -6.31747 -0.58681
-0.05297 0.38397 1.41767 1.43271 1.46476 1.54490 2.41057 2.90239
3.13692 3.34726 3.63368 3.85031 4.17781 4.38549 4.47545 4.57211
4.62749 4.64155 4.75483 5.04496 5.08299 5.42493 5.63595 5.73790
6.01378 6.14618 6.31612 6.85677 7.37703 7.51204 8.92039
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.072968 B = 0.004246 C = 0.004205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 383.637399 B = 6593.152281 C = 6657.413237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.028 4.028
3 N -0.305 5.305
4 N -0.294 5.294
5 C -0.030 4.030
6 C 0.139 3.861
7 N -0.691 5.691
8 C 0.085 3.915
9 C 0.030 3.970
10 C -0.542 4.542
11 H 0.065 0.935
12 C -0.002 4.002
13 N -0.933 5.933
14 Si 0.969 3.031
15 H -0.274 1.274
16 H -0.283 1.283
17 H -0.260 1.260
18 S 0.247 5.753
19 H 0.111 0.889
20 H 0.109 0.891
21 H 0.095 0.905
22 H 0.117 0.883
23 H 0.064 0.936
24 H 0.338 0.662
25 H 0.074 0.926
26 H 0.027 0.973
27 H -0.013 1.013
28 H -0.003 1.003
29 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.813 -0.567 -12.883 20.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.307 4.307
3 N -0.143 5.143
4 N -0.133 5.133
5 C -0.309 4.309
6 C 0.007 3.993
7 N -0.323 5.323
8 C -0.044 4.044
9 C -0.007 4.007
10 C -0.581 4.581
11 H 0.083 0.917
12 C -0.200 4.200
13 N -0.573 5.573
14 Si 0.793 3.207
15 H -0.200 1.200
16 H -0.209 1.209
17 H -0.184 1.184
18 S 0.491 5.509
19 H 0.129 0.871
20 H 0.127 0.873
21 H 0.113 0.887
22 H 0.135 0.865
23 H 0.082 0.918
24 H 0.155 0.845
25 H 0.093 0.907
26 H 0.045 0.955
27 H 0.005 0.995
28 H 0.016 0.984
29 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -16.006 -0.859 -12.656 20.423
hybrid contribution 1.475 0.947 0.317 1.781
sum -14.531 0.088 -12.339 19.064
Atomic orbital electron populations
1.20641 0.80917 1.06000 1.05924 1.30003 1.06201 0.92087 1.02385
1.71398 0.97012 1.28680 1.17256 1.71399 1.07475 1.18688 1.15689
1.29183 1.04406 0.92855 1.04478 1.20440 0.85351 1.02044 0.91515
1.60608 1.23285 1.36670 1.11698 1.21855 0.85236 0.99194 0.98096
1.18932 0.94928 0.95008 0.91868 1.21612 0.98604 1.45011 0.92865
0.91664 1.26017 1.03062 0.95626 0.95318 1.70120 1.38989 1.50134
0.98067 0.85387 0.78898 0.78439 0.77940 1.19951 1.20855 1.18414
1.83430 0.94991 1.09545 1.62946 0.87062 0.87257 0.88670 0.86526
0.91765 0.84483 0.90717 0.95513 0.99479 0.98442 0.92796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.83 10.48 71.23 0.75 -0.08 15
2 C -0.03 -0.61 7.53 88.46 0.67 0.06 15
3 N -0.30 -9.16 11.66 -50.85 -0.59 -9.75 15
4 N -0.29 -9.63 11.66 -50.85 -0.59 -10.22 15
5 C -0.03 -0.84 7.04 88.47 0.62 -0.21 15
6 C 0.14 3.86 6.28 85.56 0.54 4.40 15
7 N -0.69 -24.39 6.49 -517.91 -3.36 -27.75 15
8 C 0.08 3.42 5.62 86.31 0.49 3.91 15
9 C 0.03 1.60 5.23 29.85 0.16 1.75 15
10 C -0.54 -30.62 9.11 25.60 0.23 -30.39 15
11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15
12 C 0.00 -0.14 5.46 84.66 0.46 0.33 15
13 N -0.93 -57.22 13.29 21.45 0.28 -56.93 15
14 Si 0.97 44.06 29.54 68.60 2.03 46.08 15
15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15
16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15
17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15
18 S 0.25 5.07 23.04 -56.49 -1.30 3.77 15
19 H 0.11 0.80 8.14 -2.39 -0.02 0.78 15
20 H 0.11 0.71 8.14 -2.38 -0.02 0.69 15
21 H 0.09 1.06 8.14 -2.39 -0.02 1.05 15
22 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15
23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15
24 H 0.34 12.64 8.72 -89.69 -0.78 11.86 15
25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15
26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15
27 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 15
28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 15
29 H 0.26 15.16 8.31 -92.71 -0.77 14.39 15
Total: -1.00 -70.03 271.81 0.74 -69.28
By element:
Atomic # 1 Polarization: 5.39 SS G_CDS: 0.37 Total: 5.76 kcal
Atomic # 6 Polarization: -24.15 SS G_CDS: 3.91 Total: -20.24 kcal
Atomic # 7 Polarization: -100.40 SS G_CDS: -4.26 Total: -104.66 kcal
Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal
Atomic # 16 Polarization: 5.07 SS G_CDS: -1.30 Total: 3.77 kcal
Total: -70.03 0.74 -69.28 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000392036464.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.618 kcal
(2) G-P(sol) polarization free energy of solvation -70.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds