Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.41080 * 119.74522 * 264.02295 * 3 2 1 5 5 C 1.36253 * 120.06465 * 179.97438 * 4 3 2 6 6 C 1.40522 * 119.40378 * 0.02562 * 5 4 3 7 7 N 1.33339 * 132.02381 * 179.97438 * 6 5 4 8 8 C 1.31990 * 109.97932 * 180.02562 * 7 6 5 9 9 C 1.50707 * 125.95655 * 179.97438 * 8 7 6 10 10 C 1.40224 * 108.08874 * 359.97438 * 8 7 6 11 11 C 1.39845 * 126.89544 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00199 * 336.15471 * 11 10 8 13 13 C 1.39948 * 120.00039 * 156.15379 * 11 10 8 14 14 N 1.30984 * 119.99826 * 341.74705 * 13 11 10 15 15 Si 1.86798 * 119.99811 * 161.74425 * 13 11 10 16 16 H 1.48494 * 109.47597 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47064 * 120.00518 * 15 13 11 18 18 H 1.48507 * 109.47339 * 240.00149 * 15 13 11 19 19 N 1.37134 * 119.20816 * 359.97438 * 6 5 4 20 20 N 1.31745 * 119.74328 * 83.98609 * 3 2 1 21 21 H 4.52490 * 14.17371 * 359.97438 * 4 2 1 22 22 H 1.07998 * 119.96514 * 0.26403 * 4 3 2 23 23 H 1.07998 * 120.29820 * 180.02562 * 5 4 3 24 24 H 1.08997 * 109.47035 * 265.11274 * 9 8 7 25 25 H 1.08997 * 109.47050 * 25.11470 * 9 8 7 26 26 H 1.08996 * 109.47216 * 145.11324 * 9 8 7 27 27 H 0.97003 * 119.99501 * 185.05276 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3059 0.1285 1.2183 5 6 4.6684 0.1294 1.2259 6 6 5.3652 0.0026 0.0122 7 7 6.6679 -0.0264 -0.2704 8 6 6.8444 -0.1619 -1.5714 9 6 8.1716 -0.2350 -2.2815 10 6 5.5816 -0.2262 -2.1776 11 6 5.3117 -0.3693 -3.5423 12 1 6.0467 -0.0651 -4.2729 13 6 4.0893 -0.9065 -3.9613 14 7 3.3552 -1.5955 -3.1234 15 14 3.5047 -0.6411 -5.7155 16 1 4.5091 0.1642 -6.4556 17 1 3.3345 -1.9557 -6.3848 18 1 2.2059 0.0788 -5.7009 19 7 4.6575 -0.1200 -1.1561 20 7 3.2596 -0.1189 -1.1376 21 1 -1.0500 0.0005 -0.0001 22 1 2.7611 0.2211 2.1462 23 1 5.2080 0.2266 2.1563 24 1 8.4493 0.7578 -2.6356 25 1 8.9327 -0.6010 -1.5925 26 1 8.0928 -0.9145 -3.1301 27 1 2.5446 -2.0295 -3.4325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394771941.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = 144.309705 kcal Electronic energy + Delta-G solvation = -14795.887290 eV Core-core repulsion = 12328.511304 eV Total energy + Delta-G solvation = -2467.375987 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.46074 -38.71949 -35.78980 -34.46595 -33.67454 -32.12853 -31.08098 -28.85734 -27.08430 -24.43777 -23.67543 -21.04875 -20.37306 -19.45357 -17.80332 -17.38395 -16.89653 -16.35532 -16.15320 -14.95726 -14.43092 -14.26681 -14.07250 -13.70244 -13.57086 -13.21957 -13.04091 -12.87069 -12.71015 -12.14551 -11.91329 -11.75660 -11.53577 -11.25425 -10.83951 -10.45108 -9.59761 -8.99519 -8.62390 -6.32705 -0.16463 0.49633 1.28857 1.33097 1.37533 1.53290 1.88260 2.06050 2.16973 2.38635 2.94733 3.10708 3.29012 3.63341 4.00650 4.24438 4.43932 4.63628 4.82646 5.02331 5.05815 5.08546 5.15669 5.23594 5.28025 5.36073 5.76190 6.00962 6.25423 6.47816 6.49837 6.70744 7.29907 7.45030 8.24591 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.014501 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.346704 B = 1930.380212 C = 3341.241663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.196 4.196 3 C 0.198 3.802 4 C -0.220 4.220 5 C 0.007 3.993 6 C 0.012 3.988 7 N -0.459 5.459 8 C -0.100 4.100 9 C -0.029 4.029 10 C 0.193 3.807 11 C -0.464 4.464 12 H 0.114 0.886 13 C 0.027 3.973 14 N -0.787 5.787 15 Si 0.993 3.007 16 H -0.246 1.246 17 H -0.261 1.261 18 H -0.276 1.276 19 N -0.313 5.313 20 N -0.222 5.222 21 H 0.283 0.717 22 H 0.173 0.827 23 H 0.172 0.828 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 1.823 2.114 5.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.198 4.198 3 C 0.025 3.975 4 C -0.245 4.245 5 C -0.019 4.019 6 C -0.223 4.223 7 N -0.180 5.180 8 C -0.240 4.240 9 C -0.087 4.087 10 C 0.078 3.922 11 C -0.499 4.499 12 H 0.132 0.868 13 C -0.193 4.193 14 N -0.411 5.411 15 Si 0.813 3.187 16 H -0.169 1.169 17 H -0.186 1.186 18 H -0.201 1.201 19 N -0.093 5.093 20 N -0.030 5.030 21 H 0.299 0.701 22 H 0.191 0.809 23 H 0.190 0.810 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.869 1.700 1.844 5.477 hybrid contribution -0.758 -0.200 -0.255 0.825 sum -5.627 1.500 1.589 6.036 Atomic orbital electron populations 1.25908 0.95853 0.94096 0.95078 1.19134 0.90487 1.05315 1.04839 1.18043 0.90386 0.97850 0.91245 1.21260 0.93467 1.11523 0.98209 1.20478 0.93382 0.93009 0.95013 1.20989 0.88773 1.22513 0.89980 1.69526 1.13875 1.17601 1.16953 1.21763 0.94950 1.18085 0.89247 1.19729 0.88978 1.01771 0.98237 1.19112 0.85189 0.98661 0.89260 1.19023 1.02884 1.38292 0.89662 0.86820 1.26908 0.94998 0.92734 1.04624 1.69875 1.12603 1.20460 1.38134 0.84976 0.78634 0.79366 0.75675 1.16927 1.18601 1.20141 1.46478 1.01066 1.53487 1.08279 1.75970 0.89222 1.13972 1.23827 0.70112 0.80914 0.81037 0.91524 0.91447 0.91243 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 19.25 74.32 1.43 -0.86 15 2 C -0.20 -7.26 13.45 30.01 0.40 -6.86 15 3 C 0.20 9.06 6.69 41.10 0.27 9.33 15 4 C -0.22 -8.64 9.73 22.50 0.22 -8.42 15 5 C 0.01 0.32 10.09 22.36 0.23 0.55 15 6 C 0.01 0.62 7.85 133.75 1.05 1.67 15 7 N -0.46 -24.66 11.23 -179.36 -2.01 -26.68 15 8 C -0.10 -5.29 7.21 43.02 0.31 -4.98 15 9 C -0.03 -1.19 10.21 71.24 0.73 -0.46 15 10 C 0.19 11.08 6.48 39.02 0.25 11.33 15 11 C -0.46 -25.09 9.00 23.07 0.21 -24.89 15 12 H 0.11 5.60 7.91 -2.91 -0.02 5.58 15 13 C 0.03 1.39 5.27 85.23 0.45 1.84 15 14 N -0.79 -43.14 10.57 21.84 0.23 -42.91 15 15 Si 0.99 38.77 29.60 68.60 2.03 40.80 15 16 H -0.25 -9.03 7.11 99.48 0.71 -8.32 15 17 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 18 H -0.28 -10.82 7.11 99.48 0.71 -10.12 15 19 N -0.31 -18.04 3.85 -184.73 -0.71 -18.75 15 20 N -0.22 -12.14 9.05 -51.70 -0.47 -12.61 15 21 H 0.28 3.46 7.80 -4.42 -0.03 3.43 15 22 H 0.17 5.05 8.06 -2.91 -0.02 5.03 15 23 H 0.17 5.79 8.06 -2.91 -0.02 5.77 15 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.07 2.67 8.08 -2.39 -0.02 2.65 15 27 H 0.29 14.42 8.31 -92.71 -0.77 13.65 15 Total: -1.00 -74.02 255.37 5.81 -68.21 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.19 Total: 13.67 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.55 Total: -21.74 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -2.96 Total: -100.95 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -74.02 5.81 -68.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394771941.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.524 kcal (2) G-P(sol) polarization free energy of solvation -74.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds