Wall clock time and date at job start Mon Mar 30 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99731 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.50706 * 119.99833 * 179.97438 * 11 10 9 14 14 H 1.08993 * 112.85103 * 308.30825 * 13 11 10 15 15 C 1.53780 * 113.61008 * 79.50706 * 13 11 10 16 16 C 1.53781 * 87.08108 * 139.98066 * 15 13 11 17 17 C 1.53787 * 87.08173 * 334.56362 * 16 15 13 18 18 H 1.08993 * 113.61600 * 270.88339 * 17 16 15 19 19 C 1.50695 * 113.61441 * 139.97962 * 17 16 15 20 20 O 1.20827 * 119.99792 * 262.50369 * 19 17 16 21 21 O 1.34223 * 120.00085 * 82.50655 * 19 17 16 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 0.96989 * 120.00004 * 359.97438 * 10 9 7 26 26 H 1.08998 * 113.61370 * 254.52587 * 15 13 11 27 27 H 1.08996 * 113.62055 * 25.34816 * 15 13 11 28 28 H 1.09001 * 113.61295 * 89.11013 * 16 15 13 29 29 H 1.09000 * 113.61786 * 219.93204 * 16 15 13 30 30 H 0.96702 * 117.00150 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5616 -5.1049 0.0020 13 6 2.7334 -6.0287 0.0005 14 1 3.4810 -5.9459 -0.7882 15 6 3.3297 -6.3299 1.3856 16 6 3.1962 -7.8205 1.0320 17 6 2.0641 -7.4114 0.0749 18 1 1.0803 -7.3957 0.5437 19 6 2.0789 -8.1603 -1.2327 20 8 2.5862 -7.6610 -2.2091 21 8 1.5285 -9.3819 -1.3127 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 3.1568 -3.4353 0.0002 26 1 4.3620 -5.9986 1.4979 27 1 2.6925 -6.0173 2.2128 28 1 4.0704 -8.2290 0.5249 29 1 2.8630 -8.4389 1.8655 30 1 1.5619 -9.8230 -2.1726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397471846.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:49 Heat of formation + Delta-G solvation = -153.105030 kcal Electronic energy + Delta-G solvation = -15455.168383 eV Core-core repulsion = 12635.293855 eV Total energy + Delta-G solvation = -2819.874528 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.07076 -40.61449 -38.49139 -37.08760 -36.43928 -34.47809 -29.70421 -28.38830 -27.30377 -24.74512 -23.23025 -21.90939 -20.49283 -19.66448 -19.06969 -18.40076 -17.64283 -17.00616 -16.65142 -16.13522 -15.65609 -15.17535 -15.11050 -14.50567 -14.27981 -13.90098 -13.70158 -13.21385 -13.08457 -12.66443 -12.63207 -12.54607 -12.21465 -11.91591 -11.59196 -11.44364 -11.02951 -10.77841 -10.74511 -10.02325 -8.81817 -6.57489 1.09093 1.55446 1.56300 1.64632 1.83448 1.99572 2.40880 2.58430 3.06446 3.12640 3.39019 3.62847 3.76475 4.08439 4.40415 4.53971 4.61251 4.74451 4.76902 4.91314 4.93286 4.99249 5.27984 5.39768 5.51866 5.53155 6.04854 6.28506 6.72900 6.92764 7.18721 7.35631 8.57510 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.050865 B = 0.005369 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.342812 B = 5214.096300 C = 5365.228635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.032 4.032 3 Si 1.131 2.869 4 H -0.286 1.286 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.631 4.631 8 H 0.077 0.923 9 C 0.251 3.749 10 N -0.699 5.699 11 C 0.504 3.496 12 O -0.603 6.603 13 C -0.120 4.120 14 H 0.133 0.867 15 C -0.112 4.112 16 C -0.095 4.095 17 C -0.100 4.100 18 H 0.125 0.875 19 C 0.496 3.504 20 O -0.551 6.551 21 O -0.506 6.506 22 H 0.253 0.747 23 H -0.013 1.013 24 H -0.021 1.021 25 H 0.410 0.590 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.817 -16.680 2.466 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.231 4.231 3 Si 0.950 3.050 4 H -0.212 1.212 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.668 4.668 8 H 0.095 0.905 9 C 0.128 3.872 10 N -0.348 5.348 11 C 0.292 3.708 12 O -0.486 6.486 13 C -0.141 4.141 14 H 0.151 0.849 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.119 4.119 18 H 0.143 0.857 19 C 0.340 3.660 20 O -0.441 6.441 21 O -0.319 6.319 22 H 0.062 0.938 23 H 0.005 0.995 24 H -0.003 1.003 25 H 0.246 0.754 26 H 0.132 0.868 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 9.904 -14.880 2.581 18.060 hybrid contribution -0.309 -1.739 -1.001 2.031 sum 9.595 -16.620 1.580 19.256 Atomic orbital electron populations 1.70910 1.08313 1.29865 1.47447 1.27687 0.96320 1.07224 0.91845 0.82781 0.73915 0.69890 0.78434 1.21164 1.19008 1.18547 1.22433 0.95619 0.91680 1.57063 0.90488 1.18705 0.89444 0.85731 0.93353 1.46036 1.11112 1.05228 1.72417 1.21286 0.89588 0.84927 0.75011 1.90616 1.19311 1.85577 1.53047 1.22925 0.97657 0.89773 1.03761 0.84914 1.22861 1.03281 0.96295 0.92566 1.22838 0.95688 0.96797 0.97878 1.22549 1.03944 0.93243 0.92212 0.85734 1.23420 0.72611 0.79533 0.90480 1.90706 1.44753 1.68923 1.39763 1.84503 1.73309 1.30544 1.43576 0.93793 0.99499 1.00318 0.75394 0.86835 0.89572 0.87339 0.87050 0.71141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.33 13.65 21.45 0.29 -58.04 16 2 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 3 Si 1.13 48.19 29.90 68.60 2.05 50.24 16 4 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.63 -35.11 9.28 25.60 0.24 -34.87 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.25 13.99 4.74 85.63 0.41 14.39 16 10 N -0.70 -30.52 5.55 -466.78 -2.59 -33.11 16 11 C 0.50 20.70 7.35 87.66 0.64 21.35 16 12 O -0.60 -30.18 15.92 -3.04 -0.05 -30.23 16 13 C -0.12 -3.34 3.47 -11.01 -0.04 -3.38 16 14 H 0.13 3.52 7.44 -2.39 -0.02 3.50 16 15 C -0.11 -2.10 7.63 31.12 0.24 -1.86 16 16 C -0.09 -1.42 7.63 31.12 0.24 -1.18 16 17 C -0.10 -2.46 3.57 -11.01 -0.04 -2.50 16 18 H 0.12 3.44 7.47 -2.39 -0.02 3.42 16 19 C 0.50 12.80 7.85 71.23 0.56 13.36 16 20 O -0.55 -17.88 16.66 21.96 0.37 -17.51 16 21 O -0.51 -9.54 13.42 -51.35 -0.69 -10.23 16 22 H 0.25 16.50 7.22 -92.71 -0.67 15.83 16 23 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 24 H -0.02 -1.31 8.01 -2.39 -0.02 -1.33 16 25 H 0.41 15.01 8.32 -92.72 -0.77 14.24 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.78 8.09 -2.39 -0.02 1.76 16 28 H 0.11 1.27 8.09 -2.39 -0.02 1.25 16 29 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.43 4.24 9.10 -74.06 -0.67 3.57 16 Total: -1.00 -79.51 269.05 1.92 -77.59 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.17 Total: 17.37 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 2.71 Total: 3.92 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -2.30 Total: -91.15 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.37 Total: -57.98 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.05 Total: 50.24 kcal Total: -79.51 1.92 -77.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397471846.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.513 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds