Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48493 * 109.47530 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47218 * 120.00120 * 3 2 1 6 6 H 1.48506 * 109.46955 * 239.99275 * 3 2 1 7 7 C 1.37881 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00352 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99602 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00444 * 180.02562 * 11 10 9 14 14 H 1.09005 * 112.84709 * 335.18066 * 13 11 10 15 15 C 1.53786 * 113.61656 * 203.99255 * 13 11 10 16 16 C 1.53786 * 87.07523 * 270.88018 * 15 13 11 17 17 C 1.53774 * 113.61719 * 106.48885 * 13 11 10 18 18 H 1.09005 * 113.61600 * 203.66803 * 17 13 11 19 19 C 1.50697 * 113.61538 * 334.57108 * 17 13 11 20 20 O 1.20827 * 120.00008 * 96.10466 * 19 17 13 21 21 O 1.34230 * 119.99782 * 276.09902 * 19 17 13 22 22 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47122 * 299.99678 * 9 7 2 24 24 H 1.09004 * 109.47650 * 59.99560 * 9 7 2 25 25 H 0.96995 * 119.99959 * 0.02562 * 10 9 7 26 26 H 1.08997 * 113.61143 * 25.42213 * 15 13 11 27 27 H 1.09002 * 113.61509 * 156.24964 * 15 13 11 28 28 H 1.09001 * 113.61561 * 89.11831 * 16 15 13 29 29 H 1.09005 * 113.61244 * 220.01818 * 16 15 13 30 30 H 0.96706 * 116.99651 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0288 0.0016 14 1 3.7010 -5.7583 -0.4201 15 6 2.1547 -7.3339 -0.5708 16 6 1.6889 -7.6616 0.8577 17 6 2.8291 -6.7564 1.3530 18 1 3.7723 -7.2828 1.4993 19 6 2.4488 -5.8959 2.5302 20 8 1.3267 -5.9436 2.9759 21 8 3.3566 -5.0767 3.0838 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 0.8904 24 1 0.6246 -2.5571 -0.8896 25 1 3.1565 -3.4355 0.0009 26 1 1.3352 -7.1776 -1.2722 27 1 2.9135 -8.0175 -0.9517 28 1 0.6951 -7.2795 1.0914 29 1 1.8147 -8.7100 1.1283 30 1 3.0658 -4.5440 3.8368 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397471849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -116.651502 kcal Electronic energy + Delta-G solvation = -15934.492762 eV Core-core repulsion = 13116.198977 eV Total energy + Delta-G solvation = -2818.293784 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91811 -39.00881 -36.90453 -35.76417 -34.15882 -32.33372 -27.99534 -27.38373 -25.85482 -22.80552 -21.95019 -20.57123 -18.94022 -18.04116 -17.19731 -16.37664 -16.09235 -15.53370 -14.97966 -14.59970 -14.19427 -14.00280 -13.64087 -12.68302 -12.52288 -12.28013 -11.95530 -11.67827 -11.34193 -11.16243 -11.02878 -10.90738 -10.86523 -10.50135 -10.28692 -10.18355 -9.42333 -9.03578 -8.74084 -7.90527 -6.16966 -4.24395 2.36740 3.14886 3.16658 3.24665 3.29460 3.31090 3.98195 4.33457 4.37211 4.61221 4.78551 4.98939 5.18845 5.31416 5.51374 5.58143 5.67689 5.75480 6.00145 6.07059 6.46333 6.71611 7.28893 7.40431 7.50154 7.64813 7.95901 8.09194 8.59301 8.75967 9.06108 9.42037 10.93172 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037801 B = 0.006990 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.552204 B = 4004.943960 C = 4254.785884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.503 3.497 12 O -0.539 6.539 13 C -0.122 4.122 14 H 0.103 0.897 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.093 4.093 18 H 0.128 0.872 19 C 0.479 3.521 20 O -0.498 6.498 21 O -0.516 6.516 22 H 0.267 0.733 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.391 0.609 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.351 -12.545 1.818 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.354 5.354 11 C 0.287 3.713 12 O -0.417 6.417 13 C -0.144 4.144 14 H 0.121 0.879 15 C -0.156 4.156 16 C -0.155 4.155 17 C -0.113 4.113 18 H 0.146 0.854 19 C 0.320 3.680 20 O -0.384 6.384 21 O -0.328 6.328 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.224 0.776 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.106 -12.779 1.607 15.218 hybrid contribution 0.823 1.516 0.561 1.814 sum 8.929 -11.263 2.168 14.536 Atomic orbital electron populations 1.69972 1.06126 1.27441 1.48690 1.24960 0.94916 0.99463 0.94674 0.86463 0.79402 0.82272 0.78698 1.21048 1.20059 1.20039 1.21180 0.93231 0.90407 1.53457 0.91900 1.19111 0.88260 0.81900 0.97728 1.46460 1.11217 1.05950 1.71768 1.19854 0.88965 0.84065 0.78438 1.90679 1.16376 1.84662 1.50008 1.22511 1.00650 0.95567 0.95680 0.87909 1.22721 1.01170 0.94277 0.97482 1.22996 0.99177 0.98466 0.94826 1.22473 1.02941 0.96734 0.89136 0.85380 1.23240 0.82823 0.78372 0.83548 1.90740 1.21653 1.64867 1.61172 1.84495 1.45462 1.53538 1.49269 0.92364 0.95628 0.95484 0.77586 0.89577 0.89169 0.87248 0.90673 0.73157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.77 5.43 -5.20 -0.03 6.74 16 10 N -0.71 -15.16 5.55 -61.47 -0.34 -15.50 16 11 C 0.50 10.20 5.93 -10.99 -0.07 10.14 16 12 O -0.54 -13.19 15.23 5.55 0.08 -13.10 16 13 C -0.12 -1.72 4.26 -90.96 -0.39 -2.11 16 14 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 15 C -0.12 -1.42 7.43 -25.91 -0.19 -1.61 16 16 C -0.12 -1.53 7.00 -25.92 -0.18 -1.71 16 17 C -0.09 -1.19 4.21 -90.96 -0.38 -1.58 16 18 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 19 C 0.48 7.68 6.62 36.00 0.24 7.92 16 20 O -0.50 -9.93 16.65 -18.75 -0.31 -10.24 16 21 O -0.52 -7.02 13.42 -39.26 -0.53 -7.55 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 23 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.39 7.25 8.32 -40.82 -0.34 6.91 16 26 H 0.09 1.18 7.86 -51.93 -0.41 0.77 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.11 1.87 6.58 -51.93 -0.34 1.53 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.41 4.32 9.10 45.56 0.41 4.73 16 LS Contribution 267.24 15.07 4.03 4.03 Total: -1.00 -35.00 267.24 -5.51 -40.51 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -2.74 Total: 7.31 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.42 Total: 4.25 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.40 Total: -41.13 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.75 Total: -30.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.00 -5.51 -40.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397471849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.137 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds