Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48493 * 109.47530 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47218 * 120.00120 * 3 2 1 6 6 H 1.48506 * 109.46955 * 239.99275 * 3 2 1 7 7 C 1.37881 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00352 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99602 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00444 * 180.02562 * 11 10 9 14 14 H 1.09005 * 112.84709 * 335.18066 * 13 11 10 15 15 C 1.53786 * 113.61656 * 203.99255 * 13 11 10 16 16 C 1.53786 * 87.07523 * 270.88018 * 15 13 11 17 17 C 1.53774 * 113.61719 * 106.48885 * 13 11 10 18 18 H 1.09005 * 113.61600 * 203.66803 * 17 13 11 19 19 C 1.50697 * 113.61538 * 334.57108 * 17 13 11 20 20 O 1.20827 * 120.00008 * 96.10466 * 19 17 13 21 21 O 1.34230 * 119.99782 * 276.09902 * 19 17 13 22 22 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47122 * 299.99678 * 9 7 2 24 24 H 1.09004 * 109.47650 * 59.99560 * 9 7 2 25 25 H 0.96995 * 119.99959 * 0.02562 * 10 9 7 26 26 H 1.08997 * 113.61143 * 25.42213 * 15 13 11 27 27 H 1.09002 * 113.61509 * 156.24964 * 15 13 11 28 28 H 1.09001 * 113.61561 * 89.11831 * 16 15 13 29 29 H 1.09005 * 113.61244 * 220.01818 * 16 15 13 30 30 H 0.96706 * 116.99651 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0288 0.0016 14 1 3.7010 -5.7583 -0.4201 15 6 2.1547 -7.3339 -0.5708 16 6 1.6889 -7.6616 0.8577 17 6 2.8291 -6.7564 1.3530 18 1 3.7723 -7.2828 1.4993 19 6 2.4488 -5.8959 2.5302 20 8 1.3267 -5.9436 2.9759 21 8 3.3566 -5.0767 3.0838 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 0.8904 24 1 0.6246 -2.5571 -0.8896 25 1 3.1565 -3.4355 0.0009 26 1 1.3352 -7.1776 -1.2722 27 1 2.9135 -8.0175 -0.9517 28 1 0.6951 -7.2795 1.0914 29 1 1.8147 -8.7100 1.1283 30 1 3.0658 -4.5440 3.8368 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397471849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -145.007121 kcal Electronic energy + Delta-G solvation = -15935.722354 eV Core-core repulsion = 13116.198977 eV Total energy + Delta-G solvation = -2819.523376 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.18260 -40.44606 -38.27347 -37.02965 -36.13126 -34.38950 -29.89902 -28.44285 -27.34863 -24.67947 -23.15668 -22.11792 -20.46025 -19.25169 -18.65195 -18.08182 -17.46347 -17.06246 -16.80070 -15.93904 -15.84529 -15.58336 -15.00331 -14.29630 -14.09139 -13.96097 -13.57100 -13.11370 -12.95556 -12.69504 -12.57671 -12.28206 -12.25328 -12.03340 -11.57163 -11.45673 -11.38738 -10.82302 -10.68467 -9.89108 -8.31936 -6.49855 1.13004 1.41226 1.45824 1.54280 1.58963 2.05101 2.31492 2.56497 3.02567 3.30058 3.52776 3.72317 3.83785 4.26733 4.38843 4.59192 4.73127 4.80403 5.00758 5.06163 5.10296 5.16511 5.42303 5.47895 5.60589 5.64472 5.80397 6.61014 6.84302 6.93615 7.19756 7.43862 8.80277 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037801 B = 0.006990 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.552204 B = 4004.943960 C = 4254.785884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.286 1.286 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.270 3.730 10 N -0.702 5.702 11 C 0.494 3.506 12 O -0.591 6.591 13 C -0.122 4.122 14 H 0.148 0.852 15 C -0.104 4.104 16 C -0.127 4.127 17 C -0.082 4.082 18 H 0.188 0.812 19 C 0.471 3.529 20 O -0.551 6.551 21 O -0.507 6.507 22 H 0.269 0.731 23 H -0.023 1.023 24 H -0.014 1.014 25 H 0.409 0.591 26 H 0.059 0.941 27 H 0.146 0.854 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.216 -13.241 1.394 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.147 3.853 10 N -0.352 5.352 11 C 0.281 3.719 12 O -0.472 6.472 13 C -0.143 4.143 14 H 0.166 0.834 15 C -0.141 4.141 16 C -0.164 4.164 17 C -0.100 4.100 18 H 0.205 0.795 19 C 0.315 3.685 20 O -0.442 6.442 21 O -0.320 6.320 22 H 0.078 0.922 23 H -0.005 1.005 24 H 0.004 0.996 25 H 0.245 0.755 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 12.041 -13.498 1.183 18.127 hybrid contribution -0.438 1.691 0.725 1.891 sum 11.603 -11.807 1.909 16.664 Atomic orbital electron populations 1.70153 1.08450 1.28705 1.49817 1.26136 0.95776 1.04129 0.93708 0.85165 0.77874 0.76272 0.79659 1.21132 1.18524 1.18362 1.21581 0.94359 0.90379 1.53149 0.89541 1.18486 0.88658 0.84616 0.93575 1.46204 1.11175 1.05464 1.72344 1.21107 0.89613 0.84986 0.76169 1.90661 1.19404 1.85448 1.51661 1.22543 1.00524 0.93565 0.97641 0.83418 1.22844 1.01562 0.93604 0.96128 1.22963 0.96853 1.00480 0.96104 1.22805 1.05145 0.95708 0.86389 0.79508 1.24094 0.82206 0.78255 0.83967 1.90732 1.23887 1.66531 1.63013 1.84474 1.44691 1.53165 1.49647 0.92225 1.00498 0.99600 0.75474 0.92209 0.83581 0.92597 0.87013 0.71911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.11 5.46 84.66 0.46 0.58 16 3 Si 0.99 42.56 29.54 68.60 2.03 44.59 16 4 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.56 -30.79 9.28 25.60 0.24 -30.55 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.33 5.43 85.63 0.46 15.80 16 10 N -0.70 -30.52 5.55 -466.79 -2.59 -33.11 16 11 C 0.49 20.29 5.93 87.66 0.52 20.81 16 12 O -0.59 -30.68 15.23 -3.04 -0.05 -30.72 16 13 C -0.12 -3.04 4.26 -11.02 -0.05 -3.08 16 14 H 0.15 2.43 8.14 -2.38 -0.02 2.41 16 15 C -0.10 -2.14 7.43 31.12 0.23 -1.91 16 16 C -0.13 -3.06 7.00 31.12 0.22 -2.84 16 17 C -0.08 -1.80 4.21 -11.02 -0.05 -1.85 16 18 H 0.19 2.03 8.14 -2.38 -0.02 2.01 16 19 C 0.47 14.66 6.62 71.23 0.47 15.13 16 20 O -0.55 -22.83 16.65 21.96 0.37 -22.46 16 21 O -0.51 -12.94 13.42 -51.41 -0.69 -13.63 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H -0.02 -1.50 8.14 -2.38 -0.02 -1.52 16 24 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 25 H 0.41 14.56 8.32 -92.71 -0.77 13.79 16 26 H 0.06 1.58 7.86 -2.39 -0.02 1.56 16 27 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.99 6.58 -2.39 -0.02 1.97 16 29 H 0.11 1.83 8.14 -2.38 -0.02 1.82 16 30 H 0.42 8.59 9.10 -74.05 -0.67 7.91 16 Total: -1.00 -83.82 267.24 1.59 -82.23 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.27 Total: 18.27 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 2.51 Total: 12.08 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -2.30 Total: -90.35 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -0.37 Total: -66.82 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -83.82 1.59 -82.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397471849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.778 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds