Wall clock time and date at job start Mon Mar 30 2020 03:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47367 * 2 1 4 4 N 1.46493 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99983 * 269.99672 * 4 3 2 6 6 H 1.08002 * 120.00553 * 142.67999 * 5 4 3 7 7 C 1.38815 * 120.00146 * 322.68195 * 5 4 3 8 8 N 1.31616 * 120.00136 * 157.78418 * 7 5 4 9 9 Si 1.86798 * 119.99922 * 337.78731 * 7 5 4 10 10 H 1.48497 * 109.47660 * 95.32978 * 9 7 5 11 11 H 1.48504 * 109.47218 * 215.33211 * 9 7 5 12 12 H 1.48508 * 109.46921 * 335.32927 * 9 7 5 13 13 C 1.46502 * 120.00116 * 90.00129 * 4 3 2 14 14 C 1.50694 * 109.46979 * 264.58598 * 13 4 3 15 15 C 1.38126 * 123.88406 * 95.47837 * 14 13 4 16 16 N 1.30422 * 112.22818 * 180.23164 * 15 14 13 17 17 S 1.56006 * 108.39740 * 359.59943 * 16 15 14 18 18 N 1.30416 * 123.88873 * 275.43779 * 14 13 4 19 19 H 1.09007 * 109.47047 * 59.99620 * 1 2 3 20 20 H 1.08989 * 109.47435 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46995 * 300.00333 * 1 2 3 22 22 H 1.08997 * 109.47462 * 240.00236 * 2 1 3 23 23 H 1.08996 * 109.47198 * 119.99643 * 2 1 3 24 24 H 1.08997 * 109.46637 * 59.99731 * 3 2 1 25 25 H 1.09004 * 109.46624 * 300.00292 * 3 2 1 26 26 H 0.97002 * 120.00074 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47266 * 144.58705 * 13 4 3 28 28 H 1.09002 * 109.47016 * 24.58645 * 13 4 3 29 29 H 1.07996 * 123.88778 * 359.96449 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.4423 1.1850 6 1 5.1044 0.8752 1.2804 7 6 3.7097 2.1710 2.2644 8 7 4.0763 1.8538 3.4880 9 14 2.5430 3.6019 1.9802 10 1 1.1414 3.1359 2.1342 11 1 2.8207 4.6716 2.9721 12 1 2.7392 4.1357 0.6084 13 6 4.2370 1.4427 -1.2697 14 6 4.6040 0.0283 -1.6380 15 6 3.8558 -0.7657 -2.4852 16 7 4.3794 -1.9499 -2.6422 17 16 5.6915 -2.0235 -1.8016 18 7 5.6650 -0.5868 -1.1943 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0275 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 3.7403 2.3628 4.2423 27 1 5.1441 2.0381 -1.1658 28 1 3.6091 1.8704 -2.0512 29 1 2.9402 -0.4445 -2.9593 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399969793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:59 Heat of formation + Delta-G solvation = 53.929597 kcal Electronic energy + Delta-G solvation = -14021.719642 eV Core-core repulsion = 11685.868432 eV Total energy + Delta-G solvation = -2335.851211 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61187 -38.10566 -34.55727 -34.23256 -33.15997 -29.77913 -27.35365 -26.10361 -23.55498 -22.38275 -21.49230 -20.11484 -18.63363 -17.40273 -16.66086 -16.56829 -15.89897 -15.48529 -15.10498 -14.78338 -14.17806 -13.97051 -13.44348 -13.03654 -12.97638 -12.55106 -12.31288 -12.04819 -11.98249 -11.80859 -11.78111 -11.62229 -11.59344 -11.24534 -10.62392 -9.75580 -8.81890 -8.16597 -5.57776 -0.08946 0.80269 1.01617 1.34704 1.36282 1.46660 1.57837 2.45928 3.07635 3.46550 3.75882 4.17921 4.23695 4.33277 4.44604 4.61669 4.69787 4.74413 4.85879 4.94747 5.06719 5.13580 5.22476 5.39855 5.54392 5.90621 6.01208 6.24344 6.99967 7.64134 8.00708 9.03415 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.029991 B = 0.010121 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.375878 B = 2765.943831 C = 3233.275586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.126 3.874 4 N -0.601 5.601 5 C -0.252 4.252 6 H 0.032 0.968 7 C -0.025 4.025 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.315 1.315 12 H -0.244 1.244 13 C 0.219 3.781 14 C 0.052 3.948 15 C 0.045 3.955 16 N -0.588 5.588 17 S 0.645 5.355 18 N -0.592 5.592 19 H 0.078 0.922 20 H 0.058 0.942 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.017 0.983 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.261 0.739 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 -3.018 -14.104 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.002 3.998 4 N -0.323 5.323 5 C -0.382 4.382 6 H 0.050 0.950 7 C -0.220 4.220 8 N -0.599 5.599 9 Si 0.779 3.221 10 H -0.200 1.200 11 H -0.244 1.244 12 H -0.167 1.167 13 C 0.088 3.912 14 C -0.126 4.126 15 C -0.151 4.151 16 N -0.430 5.430 17 S 0.689 5.311 18 N -0.435 5.435 19 H 0.097 0.903 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.281 -4.597 -13.714 14.831 hybrid contribution -1.205 1.642 0.741 2.167 sum -4.486 -2.954 -12.973 14.041 Atomic orbital electron populations 1.21699 0.94324 1.01921 1.02134 1.21965 0.96393 0.98678 1.00346 1.21528 0.82356 0.95586 1.00344 1.44221 1.01412 1.85267 1.01383 1.18535 1.07551 1.23220 0.88864 0.95028 1.26121 1.00861 1.00492 0.94555 1.70038 1.49530 1.41357 0.98977 0.85754 0.78406 0.79534 0.78400 1.20038 1.24445 1.16707 1.19670 0.97444 0.85772 0.88336 1.24119 0.89701 1.03354 0.95459 1.24092 1.03548 0.87228 1.00195 1.72389 1.16439 1.25957 1.28168 1.78695 1.16737 1.11027 1.24595 1.72344 1.28189 1.13949 1.29016 0.90278 0.92282 0.94110 0.91516 0.96373 0.94978 0.89415 0.92995 0.92154 0.86313 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 15 2 C -0.13 -4.66 6.26 30.60 0.19 -4.47 15 3 C 0.13 4.74 4.54 86.38 0.39 5.13 15 4 N -0.60 -26.28 2.08 -706.33 -1.47 -27.75 15 5 C -0.25 -14.14 9.91 84.03 0.83 -13.31 15 6 H 0.03 2.08 8.06 -2.91 -0.02 2.05 15 7 C -0.02 -1.43 5.31 84.86 0.45 -0.98 15 8 N -0.95 -60.58 13.97 21.65 0.30 -60.28 15 9 Si 0.95 44.81 25.03 68.60 1.72 46.52 15 10 H -0.27 -12.19 6.67 99.48 0.66 -11.53 15 11 H -0.32 -15.39 7.11 99.48 0.71 -14.68 15 12 H -0.24 -10.40 7.11 99.48 0.71 -9.69 15 13 C 0.22 7.65 6.22 85.63 0.53 8.18 15 14 C 0.05 1.79 6.38 42.74 0.27 2.06 15 15 C 0.05 1.27 9.93 84.88 0.84 2.11 15 16 N -0.59 -17.73 11.45 -93.93 -1.08 -18.80 15 17 S 0.64 19.68 23.71 -56.49 -1.34 18.34 15 18 N -0.59 -22.84 11.45 -82.07 -0.94 -23.78 15 19 H 0.08 1.68 8.14 -2.38 -0.02 1.66 15 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 22 H 0.07 2.09 6.45 -2.39 -0.02 2.07 15 23 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 24 H 0.03 1.38 3.22 -2.39 -0.01 1.37 15 25 H 0.09 2.53 7.86 -2.38 -0.02 2.52 15 26 H 0.26 15.70 8.31 -92.71 -0.77 14.92 15 27 H 0.06 2.29 8.08 -2.38 -0.02 2.27 15 28 H 0.12 2.93 7.82 -2.39 -0.02 2.91 15 29 H 0.23 4.52 8.00 -2.91 -0.02 4.49 15 Total: -1.00 -71.00 257.38 2.53 -68.47 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.10 Total: 1.70 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.23 Total: -4.42 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -3.18 Total: -130.61 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.52 kcal Atomic # 16 Polarization: 19.68 SS G_CDS: -1.34 Total: 18.34 kcal Total: -71.00 2.53 -68.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399969793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.400 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds