Wall clock time and date at job start Mon Mar 30 2020 03:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47229 * 2 1 4 4 N 1.46502 * 109.47193 * 119.99904 * 2 1 3 5 5 C 1.36936 * 120.00002 * 301.76426 * 4 2 1 6 6 H 1.08000 * 120.00213 * 321.83133 * 5 4 2 7 7 C 1.38815 * 120.00087 * 141.83517 * 5 4 2 8 8 N 1.31620 * 119.99957 * 338.53348 * 7 5 4 9 9 Si 1.86804 * 119.99748 * 158.53527 * 7 5 4 10 10 H 1.48499 * 109.46951 * 60.00390 * 9 7 5 11 11 H 1.48506 * 109.46610 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47219 * 299.99688 * 9 7 5 13 13 C 1.46497 * 119.99984 * 121.75950 * 4 2 1 14 14 C 1.50695 * 109.47292 * 90.00457 * 13 4 2 15 15 C 1.35342 * 127.92757 * 89.70106 * 14 13 4 16 16 N 1.31741 * 112.46793 * 179.85007 * 15 14 13 17 17 N 1.27577 * 118.26986 * 0.48121 * 16 15 14 18 18 S 1.56511 * 109.22595 * 359.72429 * 17 16 15 19 19 H 1.09012 * 109.47143 * 305.38384 * 1 2 3 20 20 H 1.08996 * 109.47150 * 65.37801 * 1 2 3 21 21 H 1.09000 * 109.47592 * 185.38383 * 1 2 3 22 22 H 1.08996 * 109.47222 * 239.99952 * 2 1 3 23 23 H 1.08998 * 109.46729 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.46988 * 300.03782 * 3 2 1 25 25 H 1.09004 * 109.46925 * 60.03560 * 3 2 1 26 26 H 0.96996 * 120.00041 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47206 * 329.99978 * 13 4 2 28 28 H 1.09004 * 109.47532 * 210.00443 * 13 4 2 29 29 H 1.08003 * 123.76611 * 0.02778 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6580 -0.2442 2.4396 6 1 1.5844 0.8159 2.6324 7 6 1.3873 -1.1542 3.4523 8 7 1.0606 -2.3937 3.1532 9 14 1.4867 -0.6197 5.2394 10 1 0.5217 0.4830 5.4806 11 1 1.1553 -1.7694 6.1190 12 1 2.8624 -0.1481 5.5393 13 6 2.8921 -1.8588 1.0621 14 6 4.3307 -1.4104 1.0414 15 6 5.1664 -1.2472 2.0934 16 7 6.3658 -0.8447 1.7259 17 7 6.5853 -0.6558 0.4834 18 16 5.2853 -0.9811 -0.3250 19 1 -0.3634 0.5951 0.8379 20 1 -0.3633 0.4281 -0.9342 21 1 -0.3634 -1.0231 0.0964 22 1 1.8933 -0.5138 -0.8899 23 1 3.1300 1.4424 -0.0005 24 1 1.6761 1.9565 -0.8896 25 1 1.6772 1.9562 0.8903 26 1 0.8718 -3.0296 3.8608 27 1 2.6608 -2.3809 0.1337 28 1 2.7330 -2.5304 1.9058 29 1 4.8826 -1.4296 3.1194 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685970686.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:53 Heat of formation + Delta-G solvation = 66.894220 kcal Electronic energy + Delta-G solvation = -14090.265174 eV Core-core repulsion = 11754.976151 eV Total energy + Delta-G solvation = -2335.289023 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.55023 -38.41535 -34.45325 -33.68012 -31.19097 -28.79960 -27.75752 -26.60395 -24.61348 -22.02529 -21.28341 -19.75963 -18.28471 -16.98501 -16.58205 -16.10203 -15.83671 -15.52029 -14.92952 -14.36788 -13.90021 -13.57980 -13.25313 -13.10850 -12.89007 -12.84485 -12.51815 -12.38781 -12.05703 -11.81414 -11.72077 -11.38325 -10.98018 -10.67520 -10.52561 -10.35088 -8.61815 -7.89013 -5.45302 -0.55515 0.37598 0.93045 1.41491 1.46986 1.51261 1.55164 2.49683 3.22767 3.42735 3.63201 4.09030 4.29713 4.31886 4.63108 4.72404 4.87122 4.94246 4.97745 5.14660 5.18385 5.20796 5.50741 5.57693 5.69025 5.78125 6.47069 6.91067 7.13402 7.79567 8.32278 9.09379 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.012468 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.127783 B = 2245.299669 C = 2970.084382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.152 3.848 3 C -0.147 4.147 4 N -0.576 5.576 5 C -0.253 4.253 6 H 0.051 0.949 7 C -0.017 4.017 8 N -0.902 5.902 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.216 3.784 14 C -0.224 4.224 15 C -0.026 4.026 16 N -0.268 5.268 17 N -0.345 5.345 18 S 0.442 5.558 19 H 0.034 0.966 20 H 0.067 0.933 21 H 0.033 0.967 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.255 0.745 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 1.576 -7.617 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 C -0.206 4.206 4 N -0.296 5.296 5 C -0.384 4.384 6 H 0.069 0.931 7 C -0.216 4.216 8 N -0.545 5.545 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.209 1.209 13 C 0.086 3.914 14 C -0.365 4.365 15 C -0.191 4.191 16 N -0.134 5.134 17 N -0.324 5.324 18 S 0.575 5.425 19 H 0.053 0.947 20 H 0.086 0.914 21 H 0.052 0.948 22 H 0.088 0.912 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.306 1.999 -8.680 9.501 hybrid contribution -0.936 -0.193 2.745 2.906 sum 2.371 1.806 -5.936 6.642 Atomic orbital electron populations 1.21925 0.96788 1.00380 1.00286 1.20743 0.93291 0.92529 0.88753 1.22081 0.99584 0.97874 1.01094 1.44072 1.50108 1.33337 1.02048 1.18926 1.40531 0.91068 0.87874 0.93107 1.25604 0.98411 0.96507 1.01123 1.70032 1.46831 1.05047 1.32559 0.85813 0.78102 0.77222 0.82157 1.20620 1.21771 1.20857 1.19408 0.78836 0.90587 1.02571 1.28992 1.05466 1.05029 0.97051 1.23596 0.88271 1.04168 1.03041 1.71215 1.20711 1.14537 1.06908 1.78499 1.24054 1.26400 1.03439 1.80752 0.98492 1.46498 1.16758 0.94663 0.91383 0.94776 0.91160 0.94668 0.90873 0.94484 0.93537 0.91531 0.89089 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.04 71.98 0.65 -4.09 15 2 C 0.15 5.42 3.36 44.99 0.15 5.57 15 3 C -0.15 -4.82 9.19 71.98 0.66 -4.16 15 4 N -0.58 -24.64 2.34 -682.35 -1.60 -26.24 15 5 C -0.25 -12.33 8.24 84.03 0.69 -11.64 15 6 H 0.05 2.57 6.94 -2.91 -0.02 2.55 15 7 C -0.02 -0.86 4.95 84.86 0.42 -0.44 15 8 N -0.90 -46.97 11.52 21.65 0.25 -46.72 15 9 Si 0.94 41.64 29.61 68.60 2.03 43.67 15 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 15 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 13 C 0.22 8.68 5.86 85.63 0.50 9.19 15 14 C -0.22 -8.29 6.27 25.02 0.16 -8.13 15 15 C -0.03 -1.04 11.53 84.04 0.97 -0.07 15 16 N -0.27 -10.71 11.68 -61.13 -0.71 -11.43 15 17 N -0.34 -12.76 12.54 37.02 0.46 -12.29 15 18 S 0.44 13.66 23.40 -56.49 -1.32 12.33 15 19 H 0.03 1.36 7.80 -2.38 -0.02 1.34 15 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.07 2.20 7.78 -2.39 -0.02 2.18 15 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 25 H 0.04 1.34 7.06 -2.38 -0.02 1.32 15 26 H 0.26 13.05 8.31 -92.71 -0.77 12.28 15 27 H 0.07 2.40 7.91 -2.39 -0.02 2.38 15 28 H 0.09 4.25 5.56 -2.39 -0.01 4.24 15 29 H 0.19 7.39 8.06 -2.91 -0.02 7.37 15 Total: -1.00 -54.85 262.84 4.46 -50.39 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.14 Total: 4.06 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 4.20 Total: -13.78 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -1.60 Total: -96.67 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 13.66 SS G_CDS: -1.32 Total: 12.33 kcal Total: -54.85 4.46 -50.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685970686.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.284 kcal (2) G-P(sol) polarization free energy of solvation -54.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds