Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.52672 * 2 1 4 4 C 1.51187 * 109.53371 * 120.14393 * 2 1 3 5 5 O 1.20824 * 121.44375 * 258.64923 * 4 2 1 6 6 O 1.35267 * 117.11614 * 78.62707 * 4 2 1 7 7 C 1.45476 * 114.66323 * 58.60552 * 6 4 2 8 8 C 1.50210 * 109.96008 * 317.03221 * 7 6 4 9 9 O 1.21280 * 118.38440 * 197.04663 * 8 7 6 10 10 N 1.33705 * 123.24391 * 17.05287 * 8 7 6 11 11 C 1.46493 * 118.62822 * 175.32053 * 10 8 7 12 12 C 1.53000 * 109.47429 * 270.02062 * 11 10 8 13 13 C 1.50697 * 109.47071 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99991 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99903 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00140 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46847 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47458 * 119.99552 * 17 15 13 20 20 H 1.48494 * 109.47059 * 239.99876 * 17 15 13 21 21 H 1.09001 * 109.47345 * 299.85425 * 1 2 3 22 22 H 1.09001 * 109.47257 * 59.85495 * 1 2 3 23 23 H 1.09006 * 109.47052 * 179.84877 * 1 2 3 24 24 H 1.08995 * 109.39333 * 77.18276 * 7 6 4 25 25 H 1.08995 * 109.39036 * 196.88829 * 7 6 4 26 26 H 1.09002 * 109.47319 * 30.02846 * 11 10 8 27 27 H 1.09007 * 109.46688 * 150.02128 * 11 10 8 28 28 H 1.09003 * 109.46868 * 299.99983 * 12 11 10 29 29 H 1.08991 * 109.46800 * 60.00451 * 12 11 10 30 30 H 0.96996 * 119.99994 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0355 -0.7155 1.2322 5 8 2.4374 -0.1058 2.1947 6 8 2.0179 -2.0679 1.2106 7 6 2.7893 -2.6679 0.1330 8 6 2.5504 -1.9193 -1.1472 9 8 2.8534 -2.4538 -2.1928 10 7 2.0203 -0.6926 -1.1909 11 6 1.9274 -0.0139 -2.4858 12 6 3.2031 0.7945 -2.7307 13 6 3.1071 1.4931 -4.0625 14 1 2.2247 1.3723 -4.6735 15 6 4.1463 2.2858 -4.5017 16 7 5.2210 2.4325 -3.7581 17 14 4.0277 3.1512 -6.1529 18 1 2.7267 2.8251 -6.7903 19 1 4.1262 4.6190 -5.9507 20 1 5.1360 2.6969 -7.0305 21 1 -0.3634 0.5116 0.8913 22 1 -0.3634 0.5161 -0.8887 23 1 -0.3633 -1.0277 -0.0027 24 1 3.8497 -2.6294 0.3821 25 1 2.4864 -3.7072 0.0062 26 1 1.8091 -0.7547 -3.2767 27 1 1.0674 0.6560 -2.4840 28 1 3.3212 1.5353 -1.9399 29 1 4.0629 0.1247 -2.7326 30 1 5.9519 2.9904 -4.0668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685973240.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -111.177285 kcal Electronic energy + Delta-G solvation = -16035.204076 eV Core-core repulsion = 13217.147671 eV Total energy + Delta-G solvation = -2818.056405 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.27004 -39.09530 -37.08527 -36.13913 -33.36405 -31.39773 -29.93290 -28.24107 -25.62688 -24.13953 -22.61792 -20.96662 -18.90650 -18.21216 -17.25691 -16.51073 -16.36651 -15.71534 -14.98796 -14.74305 -14.43825 -14.22721 -13.72301 -13.03991 -12.98583 -12.70126 -12.38730 -12.34481 -11.90560 -11.42928 -11.11375 -10.99740 -10.75527 -10.51516 -10.02969 -10.01865 -9.55389 -9.19251 -8.43634 -8.41003 -6.08125 -4.11969 1.39117 2.55291 2.74924 3.14235 3.27578 3.35423 3.39075 3.81283 4.36090 4.40758 4.76796 4.92717 5.01973 5.10717 5.28583 5.47434 5.58226 5.82531 5.99874 6.36971 6.42309 6.55492 6.70384 7.04896 7.36506 7.56409 7.70930 7.89209 8.11963 8.29062 8.94202 9.52715 11.03348 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.038008 B = 0.006961 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.510562 B = 4021.312694 C = 4180.502157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 H 0.126 0.874 4 C 0.490 3.510 5 O -0.431 6.431 6 O -0.375 6.375 7 C 0.069 3.931 8 C 0.479 3.521 9 O -0.523 6.523 10 N -0.593 5.593 11 C 0.110 3.890 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.144 0.856 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.016 0.984 29 H 0.021 0.979 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 -6.693 8.282 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.005 4.005 3 H 0.144 0.856 4 C 0.327 3.673 5 O -0.308 6.308 6 O -0.296 6.296 7 C -0.007 4.007 8 C 0.265 3.735 9 O -0.399 6.399 10 N -0.328 5.328 11 C -0.009 4.009 12 C -0.026 4.026 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.095 0.905 22 H 0.102 0.898 23 H 0.087 0.913 24 H 0.127 0.873 25 H 0.162 0.838 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.892 -6.696 8.365 13.308 hybrid contribution 0.157 0.650 -0.925 1.141 sum -7.734 -6.046 7.440 12.318 Atomic orbital electron populations 1.22119 0.91666 1.03701 1.04128 1.21851 0.97242 0.98949 0.82461 0.85601 1.23318 0.73729 0.81854 0.88380 1.90663 1.36908 1.66208 1.36983 1.86730 1.68991 1.20831 1.53033 1.23551 0.97560 0.98682 0.80875 1.20480 0.79095 0.82206 0.91745 1.90805 1.50303 1.66041 1.32769 1.47916 1.59848 1.15610 1.09421 1.22076 1.01462 0.96065 0.81328 1.19396 0.91602 0.94464 0.97132 1.21076 1.03011 1.28618 1.03353 0.92308 1.25008 0.95246 0.96587 0.97454 1.69974 1.06550 1.39074 1.37480 0.86477 0.78173 0.79228 0.83777 1.19628 1.20964 1.20931 0.90549 0.89839 0.91344 0.87314 0.83833 0.89835 0.91139 0.96523 0.96024 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.34 37.16 0.35 -1.34 16 2 C 0.10 1.40 3.32 -68.99 -0.23 1.17 16 3 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 4 C 0.49 7.09 6.85 36.24 0.25 7.34 16 5 O -0.43 -7.23 17.96 -18.59 -0.33 -7.56 16 6 O -0.37 -4.95 10.72 -42.03 -0.45 -5.40 16 7 C 0.07 0.83 7.19 35.77 0.26 1.09 16 8 C 0.48 7.97 7.59 -11.70 -0.09 7.88 16 9 O -0.52 -10.65 16.27 5.56 0.09 -10.56 16 10 N -0.59 -9.93 2.49 -167.87 -0.42 -10.35 16 11 C 0.11 2.18 5.16 -4.05 -0.02 2.16 16 12 C 0.01 0.30 5.29 -27.88 -0.15 0.15 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 17 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.08 0.87 7.28 -51.93 -0.38 0.49 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.14 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.76 7.17 -51.93 -0.37 1.39 16 27 H 0.07 1.24 7.13 -51.93 -0.37 0.87 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 265.51 15.07 4.00 4.00 Total: -1.00 -32.89 265.51 -5.06 -37.95 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -3.62 Total: -3.89 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.04 Total: 5.33 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.32 Total: -36.19 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.69 Total: -23.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.89 -5.06 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685973240.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.230 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds