Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47051 * 95.09832 * 3 2 1 5 5 H 1.48499 * 109.47210 * 215.09646 * 3 2 1 6 6 H 1.48497 * 109.47455 * 335.09826 * 3 2 1 7 7 C 1.37873 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99297 * 353.90481 * 7 2 1 9 9 C 1.50699 * 120.00518 * 173.90480 * 7 2 1 10 10 C 1.52997 * 115.54846 * 277.97250 * 9 7 2 11 11 C 1.53007 * 109.47342 * 298.68106 * 10 9 7 12 12 H 1.08997 * 109.46903 * 54.23569 * 11 10 9 13 13 N 1.46506 * 109.46750 * 294.24262 * 11 10 9 14 14 C 1.34773 * 119.99849 * 156.78055 * 13 11 10 15 15 O 1.21283 * 119.99930 * 5.27598 * 14 13 11 16 16 C 1.50691 * 109.47298 * 174.24270 * 11 10 9 17 17 O 1.20824 * 120.00382 * 120.00091 * 16 11 10 18 18 O 1.34228 * 120.00187 * 299.99702 * 16 11 10 19 19 C 1.52992 * 117.49955 * 132.26330 * 9 7 2 20 20 C 1.52995 * 117.49889 * 63.63962 * 9 7 2 21 21 H 0.97003 * 119.99989 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47657 * 58.67913 * 10 9 7 23 23 H 1.09002 * 109.47027 * 178.68092 * 10 9 7 24 24 H 0.97007 * 119.99939 * 336.77531 * 13 11 10 25 25 H 1.08003 * 119.99856 * 185.27310 * 14 13 11 26 26 H 0.96697 * 117.00625 * 180.02562 * 18 16 11 27 27 H 1.08995 * 117.50152 * 359.97438 * 19 9 7 28 28 H 1.09002 * 117.50132 * 145.02081 * 19 9 7 29 29 H 1.08996 * 117.50068 * 214.97970 * 20 9 7 30 30 H 1.09001 * 117.50057 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9842 1.3945 5 1 3.4887 1.4738 -0.8050 6 1 1.3969 2.6814 -0.5895 7 6 2.0046 -1.1940 -0.0005 8 1 1.4692 -2.1267 0.0984 9 6 3.5052 -1.1976 -0.1391 10 6 4.0361 -1.0800 -1.5692 11 6 3.5507 -2.2743 -2.3933 12 1 2.4652 -2.3451 -2.3259 13 7 4.1535 -3.5040 -1.8727 14 6 3.5578 -4.6925 -2.0941 15 8 2.5764 -4.7560 -2.8038 16 6 3.9536 -2.0879 -3.8333 17 8 4.6706 -2.8990 -4.3700 18 8 3.5159 -1.0209 -4.5201 19 6 4.3032 -2.0578 0.8427 20 6 4.3190 -0.5335 0.9734 21 1 -0.4850 0.8401 -0.0004 22 1 3.6703 -0.1564 -2.0178 23 1 5.1259 -1.0690 -1.5524 24 1 4.9814 -3.4627 -1.3688 25 1 3.9545 -5.5883 -1.6395 26 1 3.8006 -0.9444 -5.4410 27 1 3.7430 -2.6208 1.5891 28 1 5.2067 -2.5404 0.4698 29 1 5.2328 -0.0132 0.6865 30 1 3.7691 -0.0944 1.8057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700325538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = -102.028774 kcal Electronic energy + Delta-G solvation = -16331.558683 eV Core-core repulsion = 13513.898988 eV Total energy + Delta-G solvation = -2817.659695 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26948 -38.59149 -37.29068 -35.79990 -34.19624 -32.14783 -30.23294 -25.99548 -24.57003 -22.51284 -21.64827 -20.37225 -19.22991 -17.82234 -17.47998 -16.37578 -16.23384 -15.60323 -15.09388 -14.70344 -13.96628 -13.69761 -13.40083 -13.08625 -12.79300 -12.41339 -12.15298 -11.39170 -11.20647 -10.98184 -10.65659 -10.62342 -10.47481 -10.13448 -9.62643 -9.59183 -9.16132 -8.80989 -8.65244 -8.47297 -6.15137 -4.19765 2.54101 2.94245 3.26668 3.31245 3.37021 3.38614 3.91539 4.38152 4.74267 5.12057 5.21392 5.43076 5.55200 5.63693 5.85634 6.03662 6.11173 6.30169 6.36382 6.46248 6.63500 6.72445 6.78389 7.01314 7.07767 7.67232 7.77008 8.20945 8.43791 8.52410 8.88537 9.47270 10.96194 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.010855 C = 0.010016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.115357 B = 2578.820695 C = 2794.860566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.081 3.919 3 Si 0.880 3.120 4 H -0.279 1.279 5 H -0.259 1.259 6 H -0.295 1.295 7 C -0.493 4.493 8 H 0.078 0.922 9 C 0.007 3.993 10 C -0.085 4.085 11 C 0.166 3.834 12 H 0.143 0.857 13 N -0.705 5.705 14 C 0.499 3.501 15 O -0.553 6.553 16 C 0.470 3.530 17 O -0.524 6.524 18 O -0.510 6.510 19 C -0.179 4.179 20 C -0.203 4.203 21 H 0.266 0.734 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.403 0.597 25 H 0.130 0.870 26 H 0.402 0.598 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -2.185 -2.725 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.205 1.205 5 H -0.183 1.183 6 H -0.222 1.222 7 C -0.530 4.530 8 H 0.096 0.904 9 C 0.006 3.994 10 C -0.123 4.123 11 C 0.059 3.941 12 H 0.160 0.840 13 N -0.359 5.359 14 C 0.267 3.733 15 O -0.428 6.428 16 C 0.312 3.688 17 O -0.413 6.413 18 O -0.320 6.320 19 C -0.216 4.216 20 C -0.241 4.241 21 H 0.076 0.924 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.238 0.762 25 H 0.146 0.854 26 H 0.259 0.741 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.686 -2.397 -2.963 10.409 hybrid contribution 1.064 1.038 -0.296 1.516 sum 10.751 -1.359 -3.259 11.316 Atomic orbital electron populations 1.69907 1.06421 1.27284 1.49135 1.24979 0.94526 0.99076 0.93702 0.86870 0.80309 0.83348 0.78664 1.20466 1.18303 1.22154 1.20227 0.86708 0.94657 1.51383 0.90353 1.19310 0.94464 0.99563 0.86061 1.21618 0.98052 0.95793 0.96885 1.20485 1.02820 0.86509 0.84321 0.83955 1.46214 1.28073 1.06264 1.55393 1.22524 0.83722 0.86350 0.80688 1.90707 1.27316 1.86795 1.37997 1.24556 0.76073 0.77431 0.90766 1.90633 1.35995 1.43707 1.70941 1.84631 1.71203 1.46219 1.29921 1.22802 1.01105 0.92736 1.04929 1.23027 1.01753 0.95190 1.04082 0.92430 0.89343 0.93231 0.76178 0.85438 0.74085 0.89517 0.91281 0.91049 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.54 24.87 -169.99 -4.23 16.31 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.26 -5.59 5.83 56.52 0.33 -5.26 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.49 -12.67 8.52 -34.44 -0.29 -12.97 16 8 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 9 C 0.01 0.14 0.72 -155.67 -0.11 0.03 16 10 C -0.09 -1.56 4.31 -26.73 -0.12 -1.68 16 11 C 0.17 3.04 2.33 -69.08 -0.16 2.88 16 12 H 0.14 3.13 6.98 -51.93 -0.36 2.76 16 13 N -0.71 -10.93 4.01 -59.27 -0.24 -11.17 16 14 C 0.50 7.97 12.38 54.05 0.67 8.64 16 15 O -0.55 -11.71 16.90 5.56 0.09 -11.62 16 16 C 0.47 8.40 7.61 36.00 0.27 8.67 16 17 O -0.52 -10.10 17.02 -18.75 -0.32 -10.42 16 18 O -0.51 -7.90 13.22 -39.25 -0.52 -8.42 16 19 C -0.18 -3.09 9.19 -26.74 -0.25 -3.34 16 20 C -0.20 -3.87 7.68 -26.74 -0.21 -4.07 16 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.09 1.74 6.34 -51.93 -0.33 1.41 16 23 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 24 H 0.40 5.02 7.30 -40.82 -0.30 4.72 16 25 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 26 H 0.40 4.11 9.10 45.56 0.41 4.53 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.07 0.96 7.08 -51.93 -0.37 0.60 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.80 7.34 -51.93 -0.38 1.42 16 LS Contribution 261.19 15.07 3.94 3.94 Total: -1.00 -33.42 261.19 -3.43 -36.85 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -2.64 Total: 9.61 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.29 Total: 0.26 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.54 Total: -36.51 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.74 Total: -30.46 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.23 Total: 16.31 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.42 -3.43 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700325538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.181 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds