Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47051 * 95.09832 * 3 2 1 5 5 H 1.48499 * 109.47210 * 215.09646 * 3 2 1 6 6 H 1.48497 * 109.47455 * 335.09826 * 3 2 1 7 7 C 1.37873 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99297 * 353.90481 * 7 2 1 9 9 C 1.50699 * 120.00518 * 173.90480 * 7 2 1 10 10 C 1.52997 * 115.54846 * 277.97250 * 9 7 2 11 11 C 1.53007 * 109.47342 * 298.68106 * 10 9 7 12 12 H 1.08997 * 109.46903 * 54.23569 * 11 10 9 13 13 N 1.46506 * 109.46750 * 294.24262 * 11 10 9 14 14 C 1.34773 * 119.99849 * 156.78055 * 13 11 10 15 15 O 1.21283 * 119.99930 * 5.27598 * 14 13 11 16 16 C 1.50691 * 109.47298 * 174.24270 * 11 10 9 17 17 O 1.20824 * 120.00382 * 120.00091 * 16 11 10 18 18 O 1.34228 * 120.00187 * 299.99702 * 16 11 10 19 19 C 1.52992 * 117.49955 * 132.26330 * 9 7 2 20 20 C 1.52995 * 117.49889 * 63.63962 * 9 7 2 21 21 H 0.97003 * 119.99989 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47657 * 58.67913 * 10 9 7 23 23 H 1.09002 * 109.47027 * 178.68092 * 10 9 7 24 24 H 0.97007 * 119.99939 * 336.77531 * 13 11 10 25 25 H 1.08003 * 119.99856 * 185.27310 * 14 13 11 26 26 H 0.96697 * 117.00625 * 180.02562 * 18 16 11 27 27 H 1.08995 * 117.50152 * 359.97438 * 19 9 7 28 28 H 1.09002 * 117.50132 * 145.02081 * 19 9 7 29 29 H 1.08996 * 117.50068 * 214.97970 * 20 9 7 30 30 H 1.09001 * 117.50057 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6043 1.9842 1.3945 5 1 3.4887 1.4738 -0.8050 6 1 1.3969 2.6814 -0.5895 7 6 2.0046 -1.1940 -0.0005 8 1 1.4692 -2.1267 0.0984 9 6 3.5052 -1.1976 -0.1391 10 6 4.0361 -1.0800 -1.5692 11 6 3.5507 -2.2743 -2.3933 12 1 2.4652 -2.3451 -2.3259 13 7 4.1535 -3.5040 -1.8727 14 6 3.5578 -4.6925 -2.0941 15 8 2.5764 -4.7560 -2.8038 16 6 3.9536 -2.0879 -3.8333 17 8 4.6706 -2.8990 -4.3700 18 8 3.5159 -1.0209 -4.5201 19 6 4.3032 -2.0578 0.8427 20 6 4.3190 -0.5335 0.9734 21 1 -0.4850 0.8401 -0.0004 22 1 3.6703 -0.1564 -2.0178 23 1 5.1259 -1.0690 -1.5524 24 1 4.9814 -3.4627 -1.3688 25 1 3.9545 -5.5883 -1.6395 26 1 3.8006 -0.9444 -5.4410 27 1 3.7430 -2.6208 1.5891 28 1 5.2067 -2.5404 0.4698 29 1 5.2328 -0.0132 0.6865 30 1 3.7691 -0.0944 1.8057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700325538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = -129.000406 kcal Electronic energy + Delta-G solvation = -16332.728261 eV Core-core repulsion = 13513.898988 eV Total energy + Delta-G solvation = -2818.829273 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64622 -39.95783 -38.82434 -37.14027 -35.62843 -34.17113 -31.62880 -27.86069 -26.13052 -23.83825 -23.08119 -21.73769 -20.92505 -19.18270 -18.90825 -17.97133 -17.74785 -17.02609 -16.75225 -16.24520 -15.42473 -15.09542 -14.83948 -14.69357 -14.54569 -13.99723 -13.66685 -13.04716 -12.72782 -12.47173 -12.40293 -12.11288 -11.96036 -11.78746 -11.33484 -10.99452 -10.93723 -10.50454 -10.20008 -10.09682 -8.23008 -6.30161 1.13679 1.42570 1.44566 1.55425 1.68185 2.07487 2.43017 2.67744 3.11285 3.27754 3.86895 4.11427 4.26418 4.27773 4.45430 4.53825 4.62104 4.82177 4.97026 5.01848 5.21484 5.38751 5.50857 5.58349 5.62921 5.78098 6.36551 6.58950 6.80433 6.97766 7.33303 7.40184 8.92777 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.025893 B = 0.010855 C = 0.010016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.115357 B = 2578.820695 C = 2794.860566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.223 1.223 6 H -0.307 1.307 7 C -0.481 4.481 8 H 0.025 0.975 9 C -0.024 4.024 10 C -0.075 4.075 11 C 0.166 3.834 12 H 0.095 0.905 13 N -0.694 5.694 14 C 0.493 3.507 15 O -0.613 6.613 16 C 0.476 3.524 17 O -0.538 6.538 18 O -0.511 6.511 19 C -0.154 4.154 20 C -0.200 4.200 21 H 0.263 0.737 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.421 0.579 25 H 0.193 0.807 26 H 0.425 0.575 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.295 -1.970 -2.696 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.179 4.179 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.145 1.145 6 H -0.234 1.234 7 C -0.519 4.519 8 H 0.044 0.956 9 C -0.024 4.024 10 C -0.113 4.113 11 C 0.058 3.942 12 H 0.113 0.887 13 N -0.350 5.350 14 C 0.264 3.736 15 O -0.491 6.491 16 C 0.318 3.682 17 O -0.428 6.428 18 O -0.323 6.323 19 C -0.191 4.191 20 C -0.237 4.237 21 H 0.072 0.928 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.260 0.740 25 H 0.208 0.792 26 H 0.286 0.714 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.518 -2.181 -2.925 14.001 hybrid contribution -0.152 0.864 -0.300 0.928 sum 13.365 -1.316 -3.225 13.812 Atomic orbital electron populations 1.70086 1.08646 1.27924 1.52494 1.25870 0.95086 1.03100 0.93859 0.85918 0.80103 0.78275 0.79332 1.19761 1.14515 1.23429 1.20411 0.90045 0.92275 1.49122 0.95625 1.19161 0.91437 1.03642 0.88205 1.21470 1.00284 0.94913 0.94671 1.20174 1.00499 0.88099 0.85447 0.88689 1.46178 1.28501 1.05293 1.55013 1.23704 0.82604 0.87748 0.79549 1.90692 1.30105 1.87564 1.40787 1.24306 0.75748 0.77599 0.90588 1.90626 1.36807 1.44202 1.71200 1.84576 1.70870 1.45138 1.31753 1.22888 1.01549 0.92137 1.02480 1.23076 1.02046 0.96601 1.01956 0.92834 0.90816 0.89047 0.73960 0.79186 0.71357 0.90828 0.86506 0.87624 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.02 1.01 5.47 84.65 0.46 1.47 16 3 Si 0.94 42.15 24.87 68.60 1.71 43.85 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.22 -8.62 5.83 99.48 0.58 -8.04 16 6 H -0.31 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.48 -25.43 8.52 25.60 0.22 -25.21 16 8 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 9 C -0.02 -0.92 0.72 -52.93 -0.04 -0.95 16 10 C -0.08 -2.53 4.31 30.60 0.13 -2.40 16 11 C 0.17 5.90 2.33 44.24 0.10 6.00 16 12 H 0.10 4.34 6.98 -2.39 -0.02 4.33 16 13 N -0.69 -19.71 4.01 -459.81 -1.84 -21.56 16 14 C 0.49 14.82 12.38 129.79 1.61 16.43 16 15 O -0.61 -26.13 16.90 -3.04 -0.05 -26.18 16 16 C 0.48 16.19 7.61 71.23 0.54 16.74 16 17 O -0.54 -19.58 17.02 21.97 0.37 -19.21 16 18 O -0.51 -14.95 13.22 -51.40 -0.68 -15.63 16 19 C -0.15 -4.73 9.19 30.59 0.28 -4.45 16 20 C -0.20 -6.79 7.68 30.59 0.23 -6.55 16 21 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 22 H 0.07 2.70 6.34 -2.39 -0.02 2.68 16 23 H 0.09 2.34 8.11 -2.39 -0.02 2.33 16 24 H 0.42 8.51 7.30 -92.70 -0.68 7.83 16 25 H 0.19 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.42 7.74 9.10 -74.06 -0.67 7.07 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.12 2.50 7.08 -2.39 -0.02 2.48 16 29 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.07 2.60 7.34 -2.39 -0.02 2.58 16 Total: -1.00 -77.83 261.19 3.05 -74.78 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.30 Total: 21.35 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 3.54 Total: 1.07 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -1.55 Total: -80.03 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.36 Total: -61.02 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.71 Total: 43.85 kcal Total: -77.83 3.05 -74.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700325538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.218 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds