Wall clock time and date at job start Mon Mar 30 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47111 * 264.99698 * 3 2 1 5 5 H 1.48500 * 109.46879 * 24.99292 * 3 2 1 6 6 H 1.48501 * 109.47361 * 144.99273 * 3 2 1 7 7 C 1.38819 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99391 * 187.42161 * 7 2 1 9 9 N 1.36936 * 120.00313 * 7.41220 * 7 2 1 10 10 C 1.49267 * 126.07959 * 187.29938 * 9 7 2 11 11 C 1.53510 * 102.81159 * 153.17255 * 10 9 7 12 12 H 1.09008 * 114.56847 * 282.92005 * 11 10 9 13 13 C 1.53906 * 117.65018 * 145.09603 * 11 10 9 14 14 C 1.56109 * 100.33425 * 217.26880 * 13 11 10 15 15 O 1.45769 * 106.75409 * 23.65966 * 14 13 11 16 16 C 1.37728 * 106.24843 * 9.44509 * 15 14 13 17 17 C 1.50697 * 105.78861 * 69.21356 * 16 15 14 18 18 O 1.20832 * 120.00091 * 157.52156 * 17 16 15 19 19 O 1.34236 * 120.00106 * 337.52824 * 17 16 15 20 20 C 1.48097 * 126.20024 * 7.12623 * 9 7 2 21 21 H 0.96996 * 120.00240 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.74546 * 34.84104 * 10 9 7 23 23 H 1.08994 * 110.74446 * 271.50103 * 10 9 7 24 24 H 1.09001 * 111.24026 * 99.49349 * 13 11 10 25 25 H 1.08999 * 111.28045 * 335.05407 * 13 11 10 26 26 H 1.09006 * 110.00211 * 264.33848 * 14 13 11 27 27 H 1.09001 * 110.00532 * 142.98475 * 14 13 11 28 28 H 0.96705 * 116.99450 * 179.97438 * 19 17 16 29 29 H 1.09004 * 109.89323 * 55.97528 * 20 9 7 30 30 H 1.08993 * 110.40791 * 293.88131 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3987 2.6808 0.5915 6 1 3.4909 1.4729 0.8032 7 6 2.0102 -1.2022 -0.0005 8 1 3.0835 -1.2061 0.1203 9 7 1.3341 -2.3831 -0.1540 10 6 1.9150 -3.7520 -0.0237 11 6 0.7038 -4.5972 0.3947 12 1 0.4180 -4.4927 1.4414 13 6 0.6256 -6.0420 -0.1300 14 6 -0.9104 -6.1666 -0.3794 15 8 -1.4173 -4.8124 -0.5642 16 6 -0.3117 -3.9966 -0.6587 17 6 0.3403 -4.3403 -1.9732 18 8 1.0688 -3.5418 -2.5133 19 8 0.1118 -5.5335 -2.5441 20 6 -0.1038 -2.5324 -0.4754 21 1 -0.4850 0.8400 0.0004 22 1 2.6852 -3.7727 0.7474 23 1 2.3136 -4.0947 -0.9784 24 1 0.9625 -6.7544 0.6230 25 1 1.1867 -6.1570 -1.0574 26 1 -1.3915 -6.6305 0.4818 27 1 -1.0959 -6.7596 -1.2749 28 1 0.5519 -5.7083 -3.3872 29 1 -0.3356 -1.9973 -1.3963 30 1 -0.7172 -2.1612 0.3456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704989120.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:45 Heat of formation + Delta-G solvation = -44.524910 kcal Electronic energy + Delta-G solvation = -17143.371168 eV Core-core repulsion = 14328.205027 eV Total energy + Delta-G solvation = -2815.166141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.90727 -38.19987 -36.67506 -34.94458 -32.59114 -31.07386 -28.82952 -26.89517 -24.83278 -23.41948 -21.63087 -20.06578 -19.55231 -17.74759 -17.35770 -16.59960 -16.05082 -15.14533 -14.76721 -14.32095 -13.82830 -13.48878 -13.00133 -12.86576 -12.41802 -12.01687 -11.56307 -11.33329 -11.20097 -10.84249 -10.74900 -10.65167 -10.41733 -10.12239 -10.01963 -9.72720 -9.64503 -9.05607 -8.62721 -6.86042 -5.71807 -3.04708 2.67910 3.41943 3.45724 3.48920 3.50176 3.82494 4.43515 4.77988 4.85278 5.12639 5.30855 5.49668 5.56925 5.65947 5.81494 5.82334 5.88781 6.11572 6.19313 6.38817 6.49046 6.71137 6.95940 7.09548 7.29471 7.51990 7.71906 8.14847 8.44930 9.14716 9.76720 10.41762 11.41904 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049342 B = 0.009283 C = 0.009175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.329980 B = 3015.635460 C = 3051.052017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.585 5.585 10 C 0.126 3.874 11 C -0.148 4.148 12 H 0.116 0.884 13 C -0.157 4.157 14 C 0.056 3.944 15 O -0.334 6.334 16 C 0.098 3.902 17 C 0.434 3.566 18 O -0.479 6.479 19 O -0.521 6.521 20 C 0.215 3.785 21 H 0.255 0.745 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.387 0.613 29 H 0.060 0.940 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 -12.914 -0.837 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.313 5.313 10 C 0.001 3.999 11 C -0.168 4.168 12 H 0.134 0.866 13 C -0.194 4.194 14 C -0.020 4.020 15 O -0.251 6.251 16 C 0.054 3.946 17 C 0.274 3.726 18 O -0.363 6.363 19 O -0.334 6.334 20 C 0.090 3.910 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.245 0.755 29 H 0.078 0.922 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.711 -12.287 -0.628 12.324 hybrid contribution 0.902 0.596 -0.743 1.312 sum 0.192 -11.691 -1.371 11.773 Atomic orbital electron populations 1.69877 1.04962 1.25433 1.56637 1.24807 0.95708 0.97765 1.02113 0.86088 0.78502 0.83187 0.77674 1.21559 1.21677 1.20698 1.18993 0.90811 0.82107 1.42948 0.90128 1.44912 1.04244 0.99737 1.82373 1.21807 0.93521 0.86345 0.98249 1.24359 0.99313 0.93345 0.99806 0.86578 1.23355 0.96756 0.97055 1.02265 1.24131 0.93042 0.83551 1.01237 1.87835 1.27798 1.16970 1.92475 1.22372 0.85476 0.99260 0.87482 1.25554 0.79892 0.78441 0.88671 1.90786 1.34171 1.48889 1.62456 1.84926 1.70722 1.37995 1.39729 1.19900 0.87360 0.81714 1.01998 0.93497 0.92936 0.94637 0.90127 0.89183 0.90688 0.89798 0.75533 0.92215 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.63 55.49 0.59 -26.95 16 2 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 3 Si 0.92 22.58 29.56 -169.99 -5.02 17.55 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.30 10.31 -15.06 -0.16 -6.46 16 8 H 0.08 2.22 7.84 -52.48 -0.41 1.80 16 9 N -0.58 -15.40 2.87 -171.65 -0.49 -15.90 16 10 C 0.13 2.70 6.29 -2.24 -0.01 2.68 16 11 C -0.15 -2.68 4.08 -87.04 -0.36 -3.03 16 12 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 13 C -0.16 -2.17 6.13 -24.59 -0.15 -2.32 16 14 C 0.06 0.78 6.70 38.82 0.26 1.04 16 15 O -0.33 -6.25 10.96 -45.52 -0.50 -6.74 16 16 C 0.10 2.03 2.60 -90.88 -0.24 1.80 16 17 C 0.43 8.61 4.68 36.00 0.17 8.77 16 18 O -0.48 -11.35 14.06 -18.75 -0.26 -11.62 16 19 O -0.52 -7.67 8.40 -46.01 -0.39 -8.06 16 20 C 0.21 5.48 4.14 -5.11 -0.02 5.46 16 21 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.04 0.78 5.66 -51.93 -0.29 0.49 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.26 5.42 -51.93 -0.28 0.98 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.06 6.94 -51.93 -0.36 0.70 16 28 H 0.39 4.07 9.10 45.56 0.41 4.48 16 29 H 0.06 1.71 7.24 -51.93 -0.38 1.34 16 30 H 0.07 2.01 7.31 -51.93 -0.38 1.63 16 LS Contribution 238.58 15.07 3.60 3.60 Total: -1.00 -33.10 238.58 -5.59 -38.70 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -2.51 Total: 1.80 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.60 Total: 7.63 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.10 Total: -42.84 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.15 Total: -26.42 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -33.10 -5.59 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704989120.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.829 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds