Wall clock time and date at job start Mon Mar 30 2020 03:22:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86794 * 120.00255 * 2 1
4 4 H 1.48498 * 109.47111 * 264.99698 * 3 2 1
5 5 H 1.48500 * 109.46879 * 24.99292 * 3 2 1
6 6 H 1.48501 * 109.47361 * 144.99273 * 3 2 1
7 7 C 1.38819 * 119.99781 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99391 * 187.42161 * 7 2 1
9 9 N 1.36936 * 120.00313 * 7.41220 * 7 2 1
10 10 C 1.49267 * 126.07959 * 187.29938 * 9 7 2
11 11 C 1.53510 * 102.81159 * 153.17255 * 10 9 7
12 12 H 1.09008 * 114.56847 * 282.92005 * 11 10 9
13 13 C 1.53906 * 117.65018 * 145.09603 * 11 10 9
14 14 C 1.56109 * 100.33425 * 217.26880 * 13 11 10
15 15 O 1.45769 * 106.75409 * 23.65966 * 14 13 11
16 16 C 1.37728 * 106.24843 * 9.44509 * 15 14 13
17 17 C 1.50697 * 105.78861 * 69.21356 * 16 15 14
18 18 O 1.20832 * 120.00091 * 157.52156 * 17 16 15
19 19 O 1.34236 * 120.00106 * 337.52824 * 17 16 15
20 20 C 1.48097 * 126.20024 * 7.12623 * 9 7 2
21 21 H 0.96996 * 120.00240 * 359.97438 * 1 2 3
22 22 H 1.09002 * 110.74546 * 34.84104 * 10 9 7
23 23 H 1.08994 * 110.74446 * 271.50103 * 10 9 7
24 24 H 1.09001 * 111.24026 * 99.49349 * 13 11 10
25 25 H 1.08999 * 111.28045 * 335.05407 * 13 11 10
26 26 H 1.09006 * 110.00211 * 264.33848 * 14 13 11
27 27 H 1.09001 * 110.00532 * 142.98475 * 14 13 11
28 28 H 0.96705 * 116.99450 * 179.97438 * 19 17 16
29 29 H 1.09004 * 109.89323 * 55.97528 * 20 9 7
30 30 H 1.08993 * 110.40791 * 293.88131 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 2.6035 1.9853 -1.3947
5 1 1.3987 2.6808 0.5915
6 1 3.4909 1.4729 0.8032
7 6 2.0102 -1.2022 -0.0005
8 1 3.0835 -1.2061 0.1203
9 7 1.3341 -2.3831 -0.1540
10 6 1.9150 -3.7520 -0.0237
11 6 0.7038 -4.5972 0.3947
12 1 0.4180 -4.4927 1.4414
13 6 0.6256 -6.0420 -0.1300
14 6 -0.9104 -6.1666 -0.3794
15 8 -1.4173 -4.8124 -0.5642
16 6 -0.3117 -3.9966 -0.6587
17 6 0.3403 -4.3403 -1.9732
18 8 1.0688 -3.5418 -2.5133
19 8 0.1118 -5.5335 -2.5441
20 6 -0.1038 -2.5324 -0.4754
21 1 -0.4850 0.8400 0.0004
22 1 2.6852 -3.7727 0.7474
23 1 2.3136 -4.0947 -0.9784
24 1 0.9625 -6.7544 0.6230
25 1 1.1867 -6.1570 -1.0574
26 1 -1.3915 -6.6305 0.4818
27 1 -1.0959 -6.7596 -1.2749
28 1 0.5519 -5.7083 -3.3872
29 1 -0.3356 -1.9973 -1.3963
30 1 -0.7172 -2.1612 0.3456
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000704989120.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:45
Heat of formation + Delta-G solvation = -69.021911 kcal
Electronic energy + Delta-G solvation = -17144.433438 eV
Core-core repulsion = 14328.205027 eV
Total energy + Delta-G solvation = -2816.228410 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-43.42081 -39.68917 -38.27624 -36.56605 -34.43415 -32.66376 -30.68090 -28.52803
-26.70548 -24.95648 -23.18762 -21.63715 -21.11671 -19.29753 -18.99798 -18.38336
-17.59996 -17.00524 -16.23977 -15.79642 -15.55211 -15.05230 -14.73802 -14.50006
-14.10352 -13.56675 -13.20572 -13.15067 -12.75043 -12.67094 -12.38997 -12.31904
-12.06632 -11.90832 -11.71720 -11.41571 -11.26243 -10.79732 -10.44646 -8.96735
-7.88905 -5.24469 1.12545 1.44693 1.49194 1.56297 2.01009 2.32879
2.49324 3.16498 3.33896 3.46754 3.76452 4.01184 4.12981 4.23853
4.38965 4.48717 4.59041 4.79090 4.91566 4.98066 5.09957 5.19902
5.24534 5.32287 5.51164 5.65210 5.85356 6.07742 6.98571 7.05464
7.64963 8.31746 9.23703
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.049342 B = 0.009283 C = 0.009175
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 567.329980 B = 3015.635460 C = 3051.052017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C -0.067 4.067
3 Si 0.982 3.018
4 H -0.291 1.291
5 H -0.291 1.291
6 H -0.264 1.264
7 C -0.237 4.237
8 H 0.086 0.914
9 N -0.605 5.605
10 C 0.123 3.877
11 C -0.133 4.133
12 H 0.121 0.879
13 C -0.142 4.142
14 C 0.050 3.950
15 O -0.352 6.352
16 C 0.089 3.911
17 C 0.449 3.551
18 O -0.527 6.527
19 O -0.497 6.497
20 C 0.227 3.773
21 H 0.250 0.750
22 H 0.063 0.937
23 H 0.034 0.966
24 H 0.120 0.880
25 H 0.091 0.909
26 H 0.106 0.894
27 H 0.103 0.897
28 H 0.412 0.588
29 H 0.011 0.989
30 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.233 -15.329 -0.495 15.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.601 5.601
2 C -0.260 4.260
3 Si 0.810 3.190
4 H -0.218 1.218
5 H -0.217 1.217
6 H -0.188 1.188
7 C -0.365 4.365
8 H 0.104 0.896
9 N -0.333 5.333
10 C -0.001 4.001
11 C -0.153 4.153
12 H 0.139 0.861
13 C -0.179 4.179
14 C -0.024 4.024
15 O -0.270 6.270
16 C 0.045 3.955
17 C 0.291 3.709
18 O -0.415 6.415
19 O -0.310 6.310
20 C 0.102 3.898
21 H 0.059 0.941
22 H 0.081 0.919
23 H 0.052 0.948
24 H 0.138 0.862
25 H 0.110 0.890
26 H 0.124 0.876
27 H 0.121 0.879
28 H 0.273 0.727
29 H 0.029 0.971
30 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 0.002 -14.782 -0.291 14.785
hybrid contribution 0.647 1.220 -0.892 1.645
sum 0.649 -13.561 -1.184 13.628
Atomic orbital electron populations
1.70101 1.06455 1.25689 1.57900 1.25695 0.96609 1.01205 1.02453
0.85045 0.77777 0.78784 0.77429 1.21849 1.21742 1.18806 1.19411
0.91410 0.83501 1.42211 0.89585 1.45163 1.04638 1.01205 1.82317
1.21938 0.95094 0.84609 0.98495 1.24350 0.95701 0.95753 0.99470
0.86085 1.23371 0.96847 0.94436 1.03285 1.24483 0.93127 0.81155
1.03625 1.87828 1.27624 1.18818 1.92719 1.21748 0.87374 0.96887
0.89510 1.25181 0.78618 0.79004 0.88073 1.90779 1.36408 1.50653
1.63688 1.84826 1.70234 1.34943 1.41045 1.19310 0.87023 0.85124
0.98330 0.94133 0.91863 0.94789 0.86154 0.89040 0.87619 0.87937
0.72702 0.97064 0.94148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.53 10.63 21.65 0.23 -59.30 16
2 C -0.07 -3.94 5.45 84.86 0.46 -3.48 16
3 Si 0.98 47.39 29.56 68.60 2.03 49.42 16
4 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16
5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16
7 C -0.24 -13.84 10.31 84.04 0.87 -12.97 16
8 H 0.09 4.78 7.84 -2.91 -0.02 4.75 16
9 N -0.61 -32.71 2.87 -696.97 -2.00 -34.71 16
10 C 0.12 5.16 6.29 86.01 0.54 5.70 16
11 C -0.13 -4.53 4.08 -8.47 -0.03 -4.57 16
12 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16
13 C -0.14 -3.29 6.13 31.98 0.20 -3.09 16
14 C 0.05 1.17 6.70 73.06 0.49 1.66 16
15 O -0.35 -12.54 10.96 -95.16 -1.04 -13.58 16
16 C 0.09 3.66 2.60 -10.96 -0.03 3.63 16
17 C 0.45 17.36 4.68 71.23 0.33 17.69 16
18 O -0.53 -25.26 14.06 21.95 0.31 -24.95 16
19 O -0.50 -13.01 8.40 -45.03 -0.38 -13.39 16
20 C 0.23 12.15 4.14 84.81 0.35 12.50 16
21 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16
22 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
23 H 0.03 1.47 5.66 -2.39 -0.01 1.45 16
24 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16
25 H 0.09 2.13 5.42 -2.39 -0.01 2.12 16
26 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16
27 H 0.10 2.05 6.94 -2.39 -0.02 2.03 16
28 H 0.41 7.15 9.10 -74.05 -0.67 6.48 16
29 H 0.01 0.69 7.24 -2.39 -0.02 0.67 16
30 H 0.04 2.36 7.31 -2.39 -0.02 2.35 16
Total: -1.00 -75.61 238.58 2.82 -72.79
By element:
Atomic # 1 Polarization: 6.15 SS G_CDS: 0.50 Total: 6.65 kcal
Atomic # 6 Polarization: 13.90 SS G_CDS: 3.18 Total: 17.07 kcal
Atomic # 7 Polarization: -92.24 SS G_CDS: -1.77 Total: -94.01 kcal
Atomic # 8 Polarization: -50.81 SS G_CDS: -1.11 Total: -51.93 kcal
Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal
Total: -75.61 2.82 -72.79 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000704989120.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.766 kcal
(2) G-P(sol) polarization free energy of solvation -75.607 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds