Wall clock time and date at job start Mon Mar 30 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47111 * 264.99698 * 3 2 1 5 5 H 1.48500 * 109.46879 * 24.99292 * 3 2 1 6 6 H 1.48501 * 109.47361 * 144.99273 * 3 2 1 7 7 C 1.38819 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99391 * 187.42161 * 7 2 1 9 9 N 1.36936 * 120.00313 * 7.41220 * 7 2 1 10 10 C 1.49267 * 126.07959 * 187.29938 * 9 7 2 11 11 C 1.53510 * 102.81159 * 153.17255 * 10 9 7 12 12 H 1.09008 * 114.56847 * 282.92005 * 11 10 9 13 13 C 1.53906 * 117.65018 * 145.09603 * 11 10 9 14 14 C 1.56109 * 100.33425 * 217.26880 * 13 11 10 15 15 O 1.45769 * 106.75409 * 23.65966 * 14 13 11 16 16 C 1.37728 * 106.24843 * 9.44509 * 15 14 13 17 17 C 1.50697 * 105.78861 * 69.21356 * 16 15 14 18 18 O 1.20832 * 120.00091 * 157.52156 * 17 16 15 19 19 O 1.34236 * 120.00106 * 337.52824 * 17 16 15 20 20 C 1.48097 * 126.20024 * 7.12623 * 9 7 2 21 21 H 0.96996 * 120.00240 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.74546 * 34.84104 * 10 9 7 23 23 H 1.08994 * 110.74446 * 271.50103 * 10 9 7 24 24 H 1.09001 * 111.24026 * 99.49349 * 13 11 10 25 25 H 1.08999 * 111.28045 * 335.05407 * 13 11 10 26 26 H 1.09006 * 110.00211 * 264.33848 * 14 13 11 27 27 H 1.09001 * 110.00532 * 142.98475 * 14 13 11 28 28 H 0.96705 * 116.99450 * 179.97438 * 19 17 16 29 29 H 1.09004 * 109.89323 * 55.97528 * 20 9 7 30 30 H 1.08993 * 110.40791 * 293.88131 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3987 2.6808 0.5915 6 1 3.4909 1.4729 0.8032 7 6 2.0102 -1.2022 -0.0005 8 1 3.0835 -1.2061 0.1203 9 7 1.3341 -2.3831 -0.1540 10 6 1.9150 -3.7520 -0.0237 11 6 0.7038 -4.5972 0.3947 12 1 0.4180 -4.4927 1.4414 13 6 0.6256 -6.0420 -0.1300 14 6 -0.9104 -6.1666 -0.3794 15 8 -1.4173 -4.8124 -0.5642 16 6 -0.3117 -3.9966 -0.6587 17 6 0.3403 -4.3403 -1.9732 18 8 1.0688 -3.5418 -2.5133 19 8 0.1118 -5.5335 -2.5441 20 6 -0.1038 -2.5324 -0.4754 21 1 -0.4850 0.8400 0.0004 22 1 2.6852 -3.7727 0.7474 23 1 2.3136 -4.0947 -0.9784 24 1 0.9625 -6.7544 0.6230 25 1 1.1867 -6.1570 -1.0574 26 1 -1.3915 -6.6305 0.4818 27 1 -1.0959 -6.7596 -1.2749 28 1 0.5519 -5.7083 -3.3872 29 1 -0.3356 -1.9973 -1.3963 30 1 -0.7172 -2.1612 0.3456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704989120.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:45 Heat of formation + Delta-G solvation = -69.021911 kcal Electronic energy + Delta-G solvation = -17144.433438 eV Core-core repulsion = 14328.205027 eV Total energy + Delta-G solvation = -2816.228410 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.42081 -39.68917 -38.27624 -36.56605 -34.43415 -32.66376 -30.68090 -28.52803 -26.70548 -24.95648 -23.18762 -21.63715 -21.11671 -19.29753 -18.99798 -18.38336 -17.59996 -17.00524 -16.23977 -15.79642 -15.55211 -15.05230 -14.73802 -14.50006 -14.10352 -13.56675 -13.20572 -13.15067 -12.75043 -12.67094 -12.38997 -12.31904 -12.06632 -11.90832 -11.71720 -11.41571 -11.26243 -10.79732 -10.44646 -8.96735 -7.88905 -5.24469 1.12545 1.44693 1.49194 1.56297 2.01009 2.32879 2.49324 3.16498 3.33896 3.46754 3.76452 4.01184 4.12981 4.23853 4.38965 4.48717 4.59041 4.79090 4.91566 4.98066 5.09957 5.19902 5.24534 5.32287 5.51164 5.65210 5.85356 6.07742 6.98571 7.05464 7.64963 8.31746 9.23703 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049342 B = 0.009283 C = 0.009175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.329980 B = 3015.635460 C = 3051.052017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.982 3.018 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.123 3.877 11 C -0.133 4.133 12 H 0.121 0.879 13 C -0.142 4.142 14 C 0.050 3.950 15 O -0.352 6.352 16 C 0.089 3.911 17 C 0.449 3.551 18 O -0.527 6.527 19 O -0.497 6.497 20 C 0.227 3.773 21 H 0.250 0.750 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.412 0.588 29 H 0.011 0.989 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -15.329 -0.495 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.333 5.333 10 C -0.001 4.001 11 C -0.153 4.153 12 H 0.139 0.861 13 C -0.179 4.179 14 C -0.024 4.024 15 O -0.270 6.270 16 C 0.045 3.955 17 C 0.291 3.709 18 O -0.415 6.415 19 O -0.310 6.310 20 C 0.102 3.898 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.138 0.862 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.273 0.727 29 H 0.029 0.971 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.002 -14.782 -0.291 14.785 hybrid contribution 0.647 1.220 -0.892 1.645 sum 0.649 -13.561 -1.184 13.628 Atomic orbital electron populations 1.70101 1.06455 1.25689 1.57900 1.25695 0.96609 1.01205 1.02453 0.85045 0.77777 0.78784 0.77429 1.21849 1.21742 1.18806 1.19411 0.91410 0.83501 1.42211 0.89585 1.45163 1.04638 1.01205 1.82317 1.21938 0.95094 0.84609 0.98495 1.24350 0.95701 0.95753 0.99470 0.86085 1.23371 0.96847 0.94436 1.03285 1.24483 0.93127 0.81155 1.03625 1.87828 1.27624 1.18818 1.92719 1.21748 0.87374 0.96887 0.89510 1.25181 0.78618 0.79004 0.88073 1.90779 1.36408 1.50653 1.63688 1.84826 1.70234 1.34943 1.41045 1.19310 0.87023 0.85124 0.98330 0.94133 0.91863 0.94789 0.86154 0.89040 0.87619 0.87937 0.72702 0.97064 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 10.63 21.65 0.23 -59.30 16 2 C -0.07 -3.94 5.45 84.86 0.46 -3.48 16 3 Si 0.98 47.39 29.56 68.60 2.03 49.42 16 4 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.84 10.31 84.04 0.87 -12.97 16 8 H 0.09 4.78 7.84 -2.91 -0.02 4.75 16 9 N -0.61 -32.71 2.87 -696.97 -2.00 -34.71 16 10 C 0.12 5.16 6.29 86.01 0.54 5.70 16 11 C -0.13 -4.53 4.08 -8.47 -0.03 -4.57 16 12 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 13 C -0.14 -3.29 6.13 31.98 0.20 -3.09 16 14 C 0.05 1.17 6.70 73.06 0.49 1.66 16 15 O -0.35 -12.54 10.96 -95.16 -1.04 -13.58 16 16 C 0.09 3.66 2.60 -10.96 -0.03 3.63 16 17 C 0.45 17.36 4.68 71.23 0.33 17.69 16 18 O -0.53 -25.26 14.06 21.95 0.31 -24.95 16 19 O -0.50 -13.01 8.40 -45.03 -0.38 -13.39 16 20 C 0.23 12.15 4.14 84.81 0.35 12.50 16 21 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 22 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.03 1.47 5.66 -2.39 -0.01 1.45 16 24 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.09 2.13 5.42 -2.39 -0.01 2.12 16 26 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.10 2.05 6.94 -2.39 -0.02 2.03 16 28 H 0.41 7.15 9.10 -74.05 -0.67 6.48 16 29 H 0.01 0.69 7.24 -2.39 -0.02 0.67 16 30 H 0.04 2.36 7.31 -2.39 -0.02 2.35 16 Total: -1.00 -75.61 238.58 2.82 -72.79 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.50 Total: 6.65 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 3.18 Total: 17.07 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -1.77 Total: -94.01 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: -1.11 Total: -51.93 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.61 2.82 -72.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704989120.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.766 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds