Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 115.55814 * 2 1 4 4 O 1.20831 * 119.99736 * 214.30022 * 3 2 1 5 5 O 1.34223 * 120.00242 * 34.30256 * 3 2 1 6 6 C 1.53000 * 117.49776 * 145.69038 * 2 1 3 7 7 C 1.52997 * 117.49537 * 214.31493 * 2 1 3 8 8 H 1.08999 * 117.49685 * 145.02116 * 7 2 1 9 9 C 1.50696 * 117.52180 * 359.97438 * 7 2 1 10 10 O 1.21290 * 119.99779 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00368 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00348 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47258 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00176 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00130 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99704 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47131 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47305 * 120.00065 * 17 15 13 20 20 H 1.48506 * 109.47297 * 239.99903 * 17 15 13 21 21 H 1.09005 * 109.46967 * 325.69988 * 1 2 3 22 22 H 1.09000 * 109.47392 * 85.70102 * 1 2 3 23 23 H 1.09004 * 109.46938 * 205.70618 * 1 2 3 24 24 H 0.96703 * 117.00307 * 180.02562 * 5 3 2 25 25 H 1.08990 * 117.49990 * 359.97438 * 6 2 1 26 26 H 1.09004 * 117.49237 * 214.97568 * 6 2 1 27 27 H 0.97001 * 119.99539 * 0.02562 * 11 9 7 28 28 H 1.09000 * 109.47199 * 300.00775 * 12 11 9 29 29 H 1.09004 * 109.46685 * 60.00739 * 12 11 9 30 30 H 0.97002 * 120.00018 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 8 3.2207 1.5316 -0.5897 5 8 1.6035 2.3793 0.6551 6 6 2.2365 -1.1210 0.7650 7 6 2.2364 -1.1209 -0.7651 8 1 3.1715 -0.8751 -1.2684 9 6 1.3724 -2.1411 -1.4606 10 8 0.1641 -2.0545 -1.4005 11 7 1.9423 -3.1496 -2.1496 12 6 1.1023 -4.1410 -2.8262 13 6 1.9784 -5.1538 -3.5175 14 1 3.0534 -5.0678 -3.4583 15 6 1.4077 -6.1901 -4.2254 16 7 0.0987 -6.2950 -4.2970 17 14 2.4936 -7.4459 -5.0816 18 1 3.9205 -7.1066 -4.8494 19 1 2.2108 -8.7981 -4.5369 20 1 2.2127 -7.4310 -6.5398 21 1 -0.3633 0.8490 0.5792 22 1 -0.3634 0.0770 -1.0247 23 1 -0.3633 -0.9260 0.4458 24 1 2.0577 3.2325 0.6262 25 1 1.6113 -1.8582 1.2686 26 1 3.1716 -0.8751 1.2682 27 1 2.9086 -3.2189 -2.1973 28 1 0.4733 -4.6454 -2.0928 29 1 0.4728 -3.6417 -3.5628 30 1 -0.3029 -7.0243 -4.7948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713614618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = -136.097901 kcal Electronic energy + Delta-G solvation = -15359.202622 eV Core-core repulsion = 12540.065578 eV Total energy + Delta-G solvation = -2819.137044 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.90874 -40.54987 -37.85449 -37.02127 -36.04559 -34.35813 -30.35224 -29.14499 -26.18530 -25.32334 -23.80000 -21.68262 -20.81280 -18.96219 -18.74588 -18.08738 -17.22631 -16.86642 -16.66122 -16.12714 -15.98222 -15.06703 -14.74689 -14.21419 -14.07232 -13.88919 -13.61927 -13.28148 -13.18481 -12.85169 -12.75469 -12.59773 -12.21593 -11.86636 -11.46266 -11.41839 -11.27651 -10.81333 -10.57335 -9.82877 -8.29537 -6.45633 0.93858 1.43817 1.44500 1.53426 1.58146 1.82879 2.33813 2.55521 2.68924 3.05852 3.32455 3.64603 3.80606 4.06991 4.21254 4.57291 4.66003 4.87211 4.91880 4.95015 5.11706 5.24697 5.38121 5.50533 5.52264 5.69044 5.84818 6.65137 6.87795 6.95593 7.23126 7.44834 8.82823 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.059529 B = 0.005114 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.242820 B = 5473.529960 C = 5729.637731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C 0.530 3.470 4 O -0.541 6.541 5 O -0.498 6.498 6 C -0.090 4.090 7 C -0.162 4.162 8 H 0.146 0.854 9 C 0.525 3.475 10 O -0.582 6.582 11 N -0.702 5.702 12 C 0.267 3.733 13 C -0.557 4.557 14 H 0.082 0.918 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.984 3.016 18 H -0.254 1.254 19 H -0.278 1.278 20 H -0.280 1.280 21 H 0.081 0.919 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.433 0.567 25 H 0.120 0.880 26 H 0.141 0.859 27 H 0.408 0.592 28 H -0.007 1.007 29 H -0.011 1.011 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 12.956 10.806 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.374 3.626 4 O -0.432 6.432 5 O -0.311 6.311 6 C -0.127 4.127 7 C -0.183 4.183 8 H 0.164 0.836 9 C 0.312 3.688 10 O -0.463 6.463 11 N -0.351 5.351 12 C 0.144 3.856 13 C -0.594 4.594 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.807 3.193 18 H -0.178 1.178 19 H -0.203 1.203 20 H -0.205 1.205 21 H 0.100 0.900 22 H 0.065 0.935 23 H 0.083 0.917 24 H 0.295 0.705 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.243 0.757 28 H 0.011 0.989 29 H 0.007 0.993 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.655 12.580 10.619 17.407 hybrid contribution 0.660 -0.208 -0.895 1.131 sum 6.315 12.372 9.725 16.956 Atomic orbital electron populations 1.21212 0.88680 1.02869 1.02138 1.20940 0.97280 0.85868 1.07991 1.21860 0.81155 0.85796 0.73810 1.90718 1.24868 1.84499 1.43085 1.84444 1.55442 1.22938 1.68325 1.23398 1.03013 0.96273 0.89991 1.22316 1.01344 0.97038 0.97575 0.83618 1.20078 0.88013 0.81879 0.78843 1.90661 1.16223 1.76057 1.63388 1.46156 1.11188 1.26747 1.51039 1.18579 0.90544 0.85962 0.90488 1.21654 0.94123 1.10525 1.33138 0.89964 1.26025 0.96529 1.00115 0.96744 1.70132 1.11697 1.32973 1.42087 0.85125 0.78955 0.77621 0.77605 1.17795 1.20324 1.20535 0.89988 0.93471 0.91704 0.70471 0.86130 0.84133 0.75670 0.98868 0.99344 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 8.06 71.98 0.58 -1.97 16 2 C -0.12 -3.03 2.64 -52.93 -0.14 -3.17 16 3 C 0.53 12.26 7.87 71.24 0.56 12.82 16 4 O -0.54 -15.18 17.02 21.95 0.37 -14.81 16 5 O -0.50 -7.96 12.69 -51.35 -0.65 -8.61 16 6 C -0.09 -1.90 9.58 30.60 0.29 -1.61 16 7 C -0.16 -4.62 5.70 -11.54 -0.07 -4.68 16 8 H 0.15 3.83 7.67 -2.39 -0.02 3.81 16 9 C 0.53 20.74 7.59 87.66 0.67 21.41 16 10 O -0.58 -27.14 13.11 -3.06 -0.04 -27.18 16 11 N -0.70 -29.74 5.55 -466.78 -2.59 -32.33 16 12 C 0.27 14.53 5.43 85.63 0.46 15.00 16 13 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 14 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 17 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 18 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 21 H 0.08 1.84 7.49 -2.38 -0.02 1.82 16 22 H 0.05 1.55 7.26 -2.39 -0.02 1.54 16 23 H 0.06 1.96 7.02 -2.39 -0.02 1.94 16 24 H 0.43 2.67 9.10 -74.06 -0.67 2.00 16 25 H 0.12 2.54 8.05 -2.39 -0.02 2.52 16 26 H 0.14 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.41 14.55 8.32 -92.71 -0.77 13.78 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -72.66 269.36 2.20 -70.46 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.27 Total: 15.12 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 3.06 Total: 8.57 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.30 Total: -87.84 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.32 Total: -50.59 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.66 2.20 -70.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713614618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.634 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds