Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 C 1.50699 * 109.47110 * 199.92913 * 3 2 1 5 5 N 1.27943 * 120.00357 * 356.02943 * 4 3 2 6 6 Si 1.86809 * 119.99901 * 176.02821 * 4 3 2 7 7 H 1.48496 * 109.46905 * 89.99857 * 6 4 3 8 8 H 1.48496 * 109.47067 * 210.00180 * 6 4 3 9 9 H 1.48499 * 109.46816 * 329.99953 * 6 4 3 10 10 C 1.53006 * 109.47086 * 79.92779 * 3 2 1 11 11 C 1.52995 * 109.46880 * 182.64683 * 10 3 2 12 12 O 1.42900 * 109.46986 * 302.64957 * 10 3 2 13 13 C 1.52997 * 109.46666 * 62.64891 * 10 3 2 14 14 H 1.09001 * 109.09118 * 315.29211 * 13 10 3 15 15 C 1.50867 * 109.10756 * 74.39913 * 13 10 3 16 16 H 1.08000 * 127.53723 * 300.42062 * 15 13 10 17 17 S 1.76978 * 104.91546 * 120.39636 * 15 13 10 18 18 C 1.76456 * 96.89550 * 0.02562 * 17 15 13 19 19 C 1.30883 * 109.81649 * 359.97438 * 18 17 15 20 20 H 1.09000 * 109.47223 * 68.06463 * 1 2 3 21 21 H 1.09002 * 109.46788 * 188.06498 * 1 2 3 22 22 H 1.09005 * 109.46818 * 308.06369 * 1 2 3 23 23 H 1.09001 * 109.47157 * 239.99795 * 2 1 3 24 24 H 1.09005 * 109.47373 * 120.00261 * 2 1 3 25 25 H 1.08996 * 109.47190 * 319.92800 * 3 2 1 26 26 H 0.96998 * 119.99844 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47710 * 300.00113 * 11 10 3 28 28 H 1.09004 * 109.47430 * 60.00670 * 11 10 3 29 29 H 1.08999 * 109.46835 * 179.97438 * 11 10 3 30 30 H 0.96699 * 114.00021 * 77.98731 * 12 10 3 31 31 H 1.08000 * 125.08822 * 180.02562 * 18 17 15 32 32 H 1.07994 * 121.50870 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.4669 1.4707 -0.4843 5 7 4.0764 0.3761 -0.7434 6 14 4.3456 3.1042 -0.7064 7 1 5.0291 3.4746 0.5588 8 1 5.3493 2.9824 -1.7940 9 1 3.3568 4.1540 -1.0606 10 6 1.9723 2.0074 1.4203 11 6 2.4199 3.4703 1.4091 12 8 0.6297 1.9236 1.9026 13 6 2.8942 1.1989 2.3352 14 1 2.7527 0.1367 2.1354 15 6 4.3275 1.5694 2.0442 16 1 4.8538 1.4756 1.1058 17 16 4.9572 2.1920 3.5765 18 6 3.4766 1.9847 4.5138 19 6 2.5379 1.4793 3.7546 20 1 -0.3634 0.3839 -0.9533 21 1 -0.3633 -1.0175 0.1442 22 1 -0.3633 0.6336 0.8092 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.4198 2.0471 -0.6615 26 1 4.9948 0.3943 -1.0547 27 1 3.4439 3.5342 1.0412 28 1 1.7630 4.0464 0.7573 29 1 2.3712 3.8729 2.4209 30 1 0.3718 1.0392 2.1966 31 1 3.3620 2.2379 5.5575 32 1 1.5498 1.2749 4.1395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725577933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = 9.711798 kcal Electronic energy + Delta-G solvation = -15371.599567 eV Core-core repulsion = 13039.652610 eV Total energy + Delta-G solvation = -2331.946957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.93585 -34.94108 -33.70692 -32.04620 -30.57160 -26.31577 -26.22199 -22.34018 -21.41347 -20.33423 -18.28883 -17.51416 -16.52527 -15.55741 -14.53500 -14.38577 -13.98515 -13.26437 -13.18911 -12.62851 -12.36529 -12.20281 -11.94210 -11.55488 -11.02308 -10.93939 -10.57401 -10.52614 -10.12746 -10.03832 -9.90074 -9.64656 -9.23217 -9.09706 -8.74857 -8.42825 -7.89115 -7.75644 -6.39109 -3.29180 2.75514 2.87360 2.99657 3.34891 3.51180 3.88818 3.96638 5.21623 5.52120 5.58146 5.68151 5.85151 5.95289 6.10075 6.31410 6.36190 6.46410 6.54404 6.59150 6.72433 6.79155 6.83495 7.02038 7.05243 7.14982 7.31016 7.35635 7.70501 7.78383 8.10397 8.48480 8.75979 8.86614 9.13652 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.017252 C = 0.012649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.130064 B = 1622.623864 C = 2213.122839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.068 4.068 4 C 0.047 3.953 5 N -0.652 5.652 6 Si 0.947 3.053 7 H -0.203 1.203 8 H -0.293 1.293 9 H -0.262 1.262 10 C 0.135 3.865 11 C -0.125 4.125 12 O -0.571 6.571 13 C 0.073 3.927 14 H 0.005 0.995 15 C -0.773 4.773 16 H 0.107 0.893 17 S -0.148 6.148 18 C -0.165 4.165 19 C -0.196 4.196 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.319 0.681 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.362 0.638 31 H 0.116 0.884 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 0.802 -3.889 5.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.146 4.146 3 C -0.088 4.088 4 C -0.199 4.199 5 N -0.265 5.265 6 Si 0.770 3.230 7 H -0.127 1.127 8 H -0.222 1.222 9 H -0.187 1.187 10 C 0.094 3.906 11 C -0.182 4.182 12 O -0.378 6.378 13 C 0.053 3.947 14 H 0.022 0.978 15 C -0.902 4.902 16 H 0.125 0.875 17 S 0.099 5.901 18 C -0.298 4.298 19 C -0.232 4.232 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.210 0.790 31 H 0.134 0.866 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.013 1.682 -3.816 5.145 hybrid contribution -0.986 -0.865 -0.243 1.334 sum -3.999 0.817 -4.059 5.756 Atomic orbital electron populations 1.22213 0.97234 1.00793 1.02249 1.21460 0.93637 0.96211 1.03321 1.20867 0.91887 0.97529 0.98473 1.29679 0.98611 1.01987 0.89653 1.68168 1.13346 1.31941 1.13011 0.86107 0.79834 0.77773 0.79250 1.12683 1.22163 1.18708 1.22131 0.81028 0.96668 0.90810 1.21848 1.00373 0.94359 1.01583 1.86422 1.31933 1.34859 1.84620 1.18188 0.94882 0.93953 0.87644 0.97811 1.24438 0.97250 1.73123 0.95344 0.87516 1.82252 1.17400 1.77915 1.12526 1.24452 0.99049 1.06346 1.00003 1.22397 0.97550 1.06039 0.97190 0.93806 0.93961 0.90717 0.91783 0.90966 0.91000 0.86637 0.90082 0.95196 0.92520 0.78972 0.86563 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.55 37.16 0.35 -2.31 16 2 C -0.11 -2.07 4.72 -26.73 -0.13 -2.20 16 3 C -0.07 -1.39 1.66 -91.77 -0.15 -1.54 16 4 C 0.05 0.99 3.05 -13.90 -0.04 0.95 16 5 N -0.65 -13.78 11.53 56.23 0.65 -13.13 16 6 Si 0.95 18.90 22.59 -169.99 -3.84 15.06 16 7 H -0.20 -4.69 5.79 56.52 0.33 -4.37 16 8 H -0.29 -5.53 7.11 56.52 0.40 -5.12 16 9 H -0.26 -4.90 7.10 56.52 0.40 -4.49 16 10 C 0.14 3.00 0.58 -90.62 -0.05 2.95 16 11 C -0.13 -2.85 6.95 37.16 0.26 -2.59 16 12 O -0.57 -11.73 10.40 -35.23 -0.37 -12.10 16 13 C 0.07 1.84 2.00 -93.65 -0.19 1.65 16 14 H 0.00 0.12 5.67 -51.93 -0.29 -0.17 16 15 C -0.77 -21.08 7.23 36.09 0.26 -20.82 16 16 H 0.11 2.93 3.76 -52.49 -0.20 2.73 16 17 S -0.15 -3.98 22.98 -107.50 -2.47 -6.45 16 18 C -0.17 -4.09 11.14 29.05 0.32 -3.77 16 19 C -0.20 -4.78 8.33 -36.80 -0.31 -5.09 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 1.19 4.53 -51.93 -0.24 0.95 16 23 H 0.06 1.23 7.33 -51.93 -0.38 0.85 16 24 H 0.07 1.53 5.64 -51.93 -0.29 1.23 16 25 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 26 H 0.32 6.24 8.23 -40.82 -0.34 5.90 16 27 H 0.08 1.89 1.82 -51.93 -0.09 1.80 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.35 7.77 -51.93 -0.40 0.94 16 30 H 0.36 6.63 6.43 45.56 0.29 6.92 16 31 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.09 2.02 7.62 -52.49 -0.40 1.62 16 LS Contribution 241.97 15.07 3.65 3.65 Total: -1.00 -27.91 241.97 -5.37 -33.28 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -3.32 Total: 12.46 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 0.33 Total: -32.77 kcal Atomic # 7 Polarization: -13.78 SS G_CDS: 0.65 Total: -13.13 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.37 Total: -12.10 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -3.84 Total: 15.06 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.47 Total: -6.45 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.91 -5.37 -33.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725577933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.996 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds