Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47419 * 2 1 4 4 C 1.50699 * 109.47110 * 199.92913 * 3 2 1 5 5 N 1.27943 * 120.00357 * 356.02943 * 4 3 2 6 6 Si 1.86809 * 119.99901 * 176.02821 * 4 3 2 7 7 H 1.48496 * 109.46905 * 89.99857 * 6 4 3 8 8 H 1.48496 * 109.47067 * 210.00180 * 6 4 3 9 9 H 1.48499 * 109.46816 * 329.99953 * 6 4 3 10 10 C 1.53006 * 109.47086 * 79.92779 * 3 2 1 11 11 C 1.52995 * 109.46880 * 182.64683 * 10 3 2 12 12 O 1.42900 * 109.46986 * 302.64957 * 10 3 2 13 13 C 1.52997 * 109.46666 * 62.64891 * 10 3 2 14 14 H 1.09001 * 109.09118 * 315.29211 * 13 10 3 15 15 C 1.50867 * 109.10756 * 74.39913 * 13 10 3 16 16 H 1.08000 * 127.53723 * 300.42062 * 15 13 10 17 17 S 1.76978 * 104.91546 * 120.39636 * 15 13 10 18 18 C 1.76456 * 96.89550 * 0.02562 * 17 15 13 19 19 C 1.30883 * 109.81649 * 359.97438 * 18 17 15 20 20 H 1.09000 * 109.47223 * 68.06463 * 1 2 3 21 21 H 1.09002 * 109.46788 * 188.06498 * 1 2 3 22 22 H 1.09005 * 109.46818 * 308.06369 * 1 2 3 23 23 H 1.09001 * 109.47157 * 239.99795 * 2 1 3 24 24 H 1.09005 * 109.47373 * 120.00261 * 2 1 3 25 25 H 1.08996 * 109.47190 * 319.92800 * 3 2 1 26 26 H 0.96998 * 119.99844 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47710 * 300.00113 * 11 10 3 28 28 H 1.09004 * 109.47430 * 60.00670 * 11 10 3 29 29 H 1.08999 * 109.46835 * 179.97438 * 11 10 3 30 30 H 0.96699 * 114.00021 * 77.98731 * 12 10 3 31 31 H 1.08000 * 125.08822 * 180.02562 * 18 17 15 32 32 H 1.07994 * 121.50870 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.4669 1.4707 -0.4843 5 7 4.0764 0.3761 -0.7434 6 14 4.3456 3.1042 -0.7064 7 1 5.0291 3.4746 0.5588 8 1 5.3493 2.9824 -1.7940 9 1 3.3568 4.1540 -1.0606 10 6 1.9723 2.0074 1.4203 11 6 2.4199 3.4703 1.4091 12 8 0.6297 1.9236 1.9026 13 6 2.8942 1.1989 2.3352 14 1 2.7527 0.1367 2.1354 15 6 4.3275 1.5694 2.0442 16 1 4.8538 1.4756 1.1058 17 16 4.9572 2.1920 3.5765 18 6 3.4766 1.9847 4.5138 19 6 2.5379 1.4793 3.7546 20 1 -0.3634 0.3839 -0.9533 21 1 -0.3633 -1.0175 0.1442 22 1 -0.3633 0.6336 0.8092 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.4198 2.0471 -0.6615 26 1 4.9948 0.3943 -1.0547 27 1 3.4439 3.5342 1.0412 28 1 1.7630 4.0464 0.7573 29 1 2.3712 3.8729 2.4209 30 1 0.3718 1.0392 2.1966 31 1 3.3620 2.2379 5.5575 32 1 1.5498 1.2749 4.1395 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725577933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -9.109603 kcal Electronic energy + Delta-G solvation = -15372.415724 eV Core-core repulsion = 13039.652610 eV Total energy + Delta-G solvation = -2332.763114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64573 -36.60539 -35.53131 -33.57448 -32.28444 -28.23781 -27.78325 -24.20139 -22.91374 -22.16539 -20.04711 -19.26326 -18.34294 -17.21401 -16.29419 -16.15791 -15.62690 -15.08769 -14.85484 -14.29184 -13.97621 -13.84728 -13.48131 -13.04211 -12.73285 -12.56885 -12.31135 -12.10780 -11.85055 -11.71336 -11.69209 -11.44474 -11.06620 -10.81667 -10.50945 -10.29218 -9.73573 -9.47399 -8.47180 -5.37613 1.14374 1.28093 1.41233 1.56442 1.71091 1.96858 2.32733 3.53527 3.58884 3.96629 4.19976 4.26589 4.43650 4.52921 4.62358 4.74812 4.81671 4.89104 4.95218 5.09279 5.22868 5.27082 5.34195 5.48365 5.51096 5.56689 5.66711 5.80692 5.91319 6.15671 6.56460 6.98463 7.16089 7.25755 Molecular weight = 228.09amu Principal moments of inertia in cm(-1) A = 0.023501 B = 0.017252 C = 0.012649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.130064 B = 1622.623864 C = 2213.122839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.072 4.072 4 C 0.036 3.964 5 N -0.663 5.663 6 Si 0.971 3.029 7 H -0.256 1.256 8 H -0.278 1.278 9 H -0.235 1.235 10 C 0.147 3.853 11 C -0.129 4.129 12 O -0.568 6.568 13 C 0.072 3.928 14 H -0.015 1.015 15 C -0.798 4.798 16 H 0.099 0.901 17 S -0.199 6.199 18 C -0.168 4.168 19 C -0.194 4.194 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.323 0.677 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.374 0.626 31 H 0.146 0.854 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 0.958 -4.570 7.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.140 4.140 3 C -0.092 4.092 4 C -0.210 4.210 5 N -0.276 5.276 6 Si 0.794 3.206 7 H -0.182 1.182 8 H -0.205 1.205 9 H -0.158 1.158 10 C 0.105 3.895 11 C -0.185 4.185 12 O -0.376 6.376 13 C 0.052 3.948 14 H 0.002 0.998 15 C -0.926 4.926 16 H 0.116 0.884 17 S 0.046 5.954 18 C -0.300 4.300 19 C -0.229 4.229 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.139 0.861 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.223 0.777 31 H 0.164 0.836 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.029 1.825 -4.518 7.002 hybrid contribution -0.347 -0.956 0.023 1.018 sum -5.376 0.868 -4.494 7.060 Atomic orbital electron populations 1.22131 0.94504 1.02020 1.03029 1.21358 0.95938 0.94884 1.01782 1.20939 0.91979 0.98656 0.97611 1.29975 0.99189 1.02475 0.89323 1.68171 1.13829 1.32432 1.13201 0.85670 0.79969 0.77703 0.77263 1.18194 1.20537 1.15814 1.21664 0.80916 0.95731 0.91192 1.21865 1.00633 0.94978 1.00997 1.86403 1.30601 1.35939 1.84686 1.18170 0.94611 0.93197 0.88843 0.99756 1.24515 0.98505 1.74648 0.94955 0.88371 1.82346 1.19998 1.79091 1.13958 1.24705 0.97528 1.06554 1.01251 1.22737 0.98651 1.04522 0.96947 0.92431 0.92374 0.90621 0.92214 0.93546 0.88962 0.86110 0.90885 0.92837 0.94328 0.77673 0.83646 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 9.55 71.98 0.69 -3.85 16 2 C -0.10 -3.68 4.72 30.59 0.14 -3.54 16 3 C -0.07 -2.81 1.66 -11.54 -0.02 -2.83 16 4 C 0.04 1.49 3.05 88.67 0.27 1.76 16 5 N -0.66 -27.69 11.53 24.11 0.28 -27.42 16 6 Si 0.97 37.68 22.59 68.60 1.55 39.23 16 7 H -0.26 -12.18 5.79 99.48 0.58 -11.61 16 8 H -0.28 -9.99 7.11 99.48 0.71 -9.28 16 9 H -0.23 -8.04 7.10 99.48 0.71 -7.33 16 10 C 0.15 6.24 0.58 -10.79 -0.01 6.23 16 11 C -0.13 -5.63 6.95 71.98 0.50 -5.13 16 12 O -0.57 -21.60 10.40 -148.98 -1.55 -23.15 16 13 C 0.07 3.55 2.00 -12.76 -0.03 3.52 16 14 H -0.01 -0.78 5.67 -2.39 -0.01 -0.80 16 15 C -0.80 -43.97 7.23 71.29 0.52 -43.46 16 16 H 0.10 5.49 3.76 -2.91 -0.01 5.48 16 17 S -0.20 -10.85 22.98 -56.49 -1.30 -12.15 16 18 C -0.17 -8.11 11.14 67.90 0.76 -7.35 16 19 C -0.19 -9.15 8.33 25.24 0.21 -8.94 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.08 2.13 4.53 -2.38 -0.01 2.12 16 23 H 0.06 2.19 7.33 -2.39 -0.02 2.17 16 24 H 0.05 1.91 5.64 -2.38 -0.01 1.90 16 25 H 0.09 3.21 7.98 -2.39 -0.02 3.19 16 26 H 0.32 12.62 8.23 -92.71 -0.76 11.86 16 27 H 0.07 3.37 1.82 -2.39 0.00 3.36 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.78 7.77 -2.39 -0.02 1.76 16 30 H 0.37 12.49 6.43 -74.06 -0.48 12.02 16 31 H 0.15 6.04 8.06 -2.91 -0.02 6.02 16 32 H 0.12 4.90 7.62 -2.91 -0.02 4.88 16 Total: -1.00 -58.94 241.97 2.55 -56.39 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.54 Total: 30.68 kcal Atomic # 6 Polarization: -66.61 SS G_CDS: 3.03 Total: -63.58 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.28 Total: -27.42 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -1.55 Total: -23.15 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 1.55 Total: 39.23 kcal Atomic # 16 Polarization: -10.85 SS G_CDS: -1.30 Total: -12.15 kcal Total: -58.94 2.55 -56.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725577933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.276 kcal (2) G-P(sol) polarization free energy of solvation -58.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds