Wall clock time and date at job start Mon Mar 30 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.60566 * 2 1 4 4 O 1.21209 * 119.99994 * 119.67022 * 3 2 1 5 5 O 1.34313 * 119.99900 * 299.67923 * 3 2 1 6 6 C 1.34922 * 116.99721 * 179.97438 * 5 3 2 7 7 H 1.08002 * 119.99931 * 0.02562 * 6 5 3 8 8 C 1.38752 * 119.99962 * 179.97438 * 6 5 3 9 9 N 1.31448 * 120.00012 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00107 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47208 * 60.00179 * 10 8 6 12 12 H 1.48497 * 109.47434 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47370 * 300.00206 * 10 8 6 14 14 C 1.53343 * 109.60600 * 120.49280 * 2 1 3 15 15 C 1.53077 * 108.42279 * 52.22262 * 14 2 1 16 16 C 1.50172 * 109.89053 * 48.90510 * 15 14 2 17 17 O 1.21279 * 118.24387 * 162.44327 * 16 15 14 18 18 N 1.33350 * 123.50704 * 342.41451 * 16 15 14 19 19 C 1.45757 * 124.11230 * 2.22549 * 18 16 15 20 20 H 1.09001 * 109.47587 * 180.31995 * 1 2 3 21 21 H 1.09000 * 109.47421 * 300.32417 * 1 2 3 22 22 H 1.09010 * 109.47091 * 60.32038 * 1 2 3 23 23 H 0.96989 * 120.00186 * 179.97438 * 9 8 6 24 24 H 1.08996 * 109.67680 * 171.95820 * 14 2 1 25 25 H 1.09003 * 109.67073 * 292.46150 * 14 2 1 26 26 H 1.08997 * 109.39609 * 169.03735 * 15 14 2 27 27 H 1.09004 * 109.39663 * 288.77536 * 15 14 2 28 28 H 0.97002 * 117.94798 * 182.22160 * 18 16 15 29 29 H 1.08995 * 109.30501 * 220.61286 * 19 18 16 30 30 H 1.09002 * 109.29865 * 101.23194 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4197 0.0000 4 8 2.7285 1.8162 0.9121 5 8 1.7184 2.2455 -1.0106 6 6 2.2030 3.5032 -0.9489 7 1 2.8164 3.8052 -0.1129 8 6 1.9143 4.4083 -1.9602 9 7 1.1681 4.0406 -2.9780 10 14 2.5858 6.1493 -1.8752 11 1 4.0699 6.1066 -1.8452 12 1 2.1362 6.9121 -3.0674 13 1 2.0847 6.8137 -0.6453 14 6 2.0445 -0.7330 1.2447 15 6 1.3687 -2.1049 1.3122 16 6 1.4708 -2.7907 -0.0199 17 8 1.2859 -3.9885 -0.0643 18 7 1.7533 -2.1531 -1.1564 19 6 2.0430 -0.7273 -1.2436 20 1 -0.3634 -1.0276 0.0057 21 1 -0.3634 0.5188 0.8870 22 1 -0.3634 0.5089 -0.8929 23 1 0.9659 4.6734 -3.6847 24 1 3.1250 -0.8591 1.1760 25 1 1.7982 -0.1578 2.1373 26 1 1.8599 -2.7134 2.0714 27 1 0.3184 -1.9785 1.5749 28 1 1.7669 -2.6706 -1.9768 29 1 1.5581 -0.3144 -2.1281 30 1 3.1203 -0.5830 -1.3265 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798777921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:29 Heat of formation + Delta-G solvation = -150.106104 kcal Electronic energy + Delta-G solvation = -16163.729030 eV Core-core repulsion = 13343.984545 eV Total energy + Delta-G solvation = -2819.744485 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01617 -40.69604 -38.18804 -37.02310 -34.42682 -34.27703 -31.92033 -28.04797 -27.55489 -25.69113 -24.23128 -22.05198 -19.88200 -19.53930 -18.49880 -17.89141 -17.16596 -16.87222 -16.47811 -16.27683 -16.03063 -15.59962 -14.92646 -14.61410 -14.37777 -13.68241 -13.51089 -13.15458 -13.08735 -12.89178 -12.58970 -12.33758 -12.21158 -12.12015 -12.02633 -11.76028 -10.95306 -10.84511 -10.67456 -10.17334 -8.52491 -6.31360 1.30027 1.36625 1.51093 1.56072 1.61901 2.06738 2.25792 2.66263 2.98687 3.43353 3.58415 3.60895 3.80997 4.10637 4.31132 4.44041 4.56647 4.66417 4.68502 4.82331 4.88561 4.99625 5.09695 5.19952 5.29553 5.74239 5.84047 6.24092 6.65885 6.93478 7.13902 7.76677 8.66977 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.056346 B = 0.006862 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.813372 B = 4079.451153 C = 4307.964402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.410 3.590 4 O -0.576 6.576 5 O -0.231 6.231 6 C -0.420 4.420 7 H 0.081 0.919 8 C 0.001 3.999 9 N -0.898 5.898 10 Si 1.011 2.989 11 H -0.263 1.263 12 H -0.262 1.262 13 H -0.263 1.263 14 C -0.095 4.095 15 C -0.125 4.125 16 C 0.520 3.480 17 O -0.599 6.599 18 N -0.701 5.701 19 C 0.130 3.870 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.278 0.722 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.409 0.591 29 H 0.093 0.907 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -7.187 3.412 7.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.055 4.055 3 C 0.256 3.744 4 O -0.473 6.473 5 O -0.139 6.139 6 C -0.496 4.496 7 H 0.099 0.901 8 C -0.200 4.200 9 N -0.535 5.535 10 Si 0.830 3.170 11 H -0.187 1.187 12 H -0.186 1.186 13 H -0.188 1.188 14 C -0.132 4.132 15 C -0.164 4.164 16 C 0.309 3.691 17 O -0.482 6.482 18 N -0.352 5.352 19 C 0.006 3.994 20 H 0.106 0.894 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.246 0.754 29 H 0.111 0.889 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.730 -7.458 3.603 8.315 hybrid contribution 0.407 0.863 -0.458 1.058 sum -0.323 -6.595 3.145 7.314 Atomic orbital electron populations 1.21871 0.90458 1.03552 1.03395 1.20617 0.99010 0.87390 0.98447 1.23805 0.80134 0.89380 0.81051 1.90537 1.40147 1.78313 1.38316 1.83887 1.64364 1.22550 1.43091 1.21348 1.33461 0.85141 1.09679 0.90112 1.26398 0.96017 1.03925 0.93631 1.70043 1.35537 1.37841 1.10040 0.84767 0.78845 0.74560 0.78784 1.18728 1.18633 1.18790 1.21520 1.00758 0.94560 0.96403 1.21736 1.05384 0.95349 0.93971 1.20553 0.74581 0.86747 0.87226 1.90730 1.53134 1.16575 1.87749 1.45321 1.70063 1.09418 1.10396 1.21247 1.01003 0.79622 0.97558 0.89369 0.91391 0.92171 0.91242 0.90964 0.89465 0.85930 0.85833 0.75426 0.88863 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 7.80 71.98 0.56 -3.35 16 2 C -0.05 -1.72 0.72 -52.84 -0.04 -1.76 16 3 C 0.41 18.79 6.49 71.24 0.46 19.25 16 4 O -0.58 -29.33 15.14 20.78 0.31 -29.02 16 5 O -0.23 -12.53 9.61 14.83 0.14 -12.38 16 6 C -0.42 -24.17 9.64 67.94 0.66 -23.51 16 7 H 0.08 4.73 6.86 -2.91 -0.02 4.71 16 8 C 0.00 0.07 5.49 84.87 0.47 0.54 16 9 N -0.90 -50.43 13.67 21.62 0.30 -50.13 16 10 Si 1.01 41.66 29.55 68.60 2.03 43.69 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 12 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 13 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 14 C -0.09 -2.57 4.36 30.73 0.13 -2.43 16 15 C -0.13 -2.75 5.39 29.71 0.16 -2.59 16 16 C 0.52 14.01 6.90 87.71 0.61 14.62 16 17 O -0.60 -20.09 17.78 -3.03 -0.05 -20.14 16 18 N -0.70 -17.48 5.32 -467.32 -2.49 -19.97 16 19 C 0.13 3.76 5.77 86.49 0.50 4.26 16 20 H 0.09 2.06 5.76 -2.39 -0.01 2.05 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.06 1.96 8.13 -2.38 -0.02 1.94 16 23 H 0.28 14.29 8.31 -92.72 -0.77 13.52 16 24 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 25 H 0.09 2.41 7.89 -2.39 -0.02 2.39 16 26 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.12 2.27 6.94 -2.38 -0.02 2.26 16 28 H 0.41 8.97 8.80 -92.71 -0.82 8.16 16 29 H 0.09 2.79 8.12 -2.39 -0.02 2.77 16 30 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -69.91 258.32 4.09 -65.82 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.35 Total: 17.12 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 3.51 Total: 5.02 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -2.19 Total: -70.11 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: 0.40 Total: -61.55 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -69.91 4.09 -65.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798777921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.287 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds