Wall clock time and date at job start Mon Mar 30 2020 03:31:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08992 * 109.47423 * 2 1
4 4 C 1.50704 * 109.46832 * 119.99580 * 2 1 3
5 5 H 1.07999 * 120.00028 * 120.00071 * 4 2 1
6 6 C 1.37882 * 120.00111 * 300.00125 * 4 2 1
7 7 N 1.31518 * 119.99649 * 359.97438 * 6 4 2
8 8 Si 1.86792 * 120.00010 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47378 * 89.99994 * 8 6 4
10 10 H 1.48500 * 109.46961 * 209.99963 * 8 6 4
11 11 H 1.48507 * 109.47097 * 329.99695 * 8 6 4
12 12 C 1.50697 * 109.47374 * 239.99125 * 2 1 3
13 13 O 1.20818 * 120.00705 * 240.00075 * 12 2 1
14 14 O 1.34233 * 119.99413 * 60.00559 * 12 2 1
15 15 C 1.45208 * 116.99831 * 180.02562 * 14 12 2
16 16 H 1.09001 * 110.53768 * 31.15441 * 15 14 12
17 17 C 1.54625 * 110.48848 * 153.77169 * 15 14 12
18 18 C 1.54474 * 101.76763 * 143.47279 * 17 15 14
19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15
20 20 C 1.34417 * 111.30293 * 17.01799 * 19 18 17
21 21 O 1.21283 * 124.94747 * 179.63100 * 20 19 18
22 22 H 1.08998 * 109.46634 * 60.00345 * 1 2 3
23 23 H 1.09001 * 109.46900 * 180.02562 * 1 2 3
24 24 H 1.08996 * 109.47533 * 300.00526 * 1 2 3
25 25 H 0.96996 * 119.99712 * 179.97438 * 7 6 4
26 26 H 1.09001 * 110.96806 * 261.59405 * 17 15 14
27 27 H 1.09007 * 110.96934 * 25.35387 * 17 15 14
28 28 H 1.08998 * 110.24827 * 215.58069 * 18 17 15
29 29 H 1.09000 * 110.31659 * 93.61957 * 18 17 15
30 30 H 0.97007 * 124.34929 * 197.03291 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 1.2306
5 1 2.6532 -1.5885 1.1316
6 6 1.6991 -0.2392 2.4828
7 7 0.9434 0.8304 2.6034
8 14 2.3223 -1.1193 4.0081
9 1 3.6303 -0.5437 4.4121
10 1 1.3442 -0.9486 5.1123
11 1 2.4878 -2.5652 3.7124
12 6 2.0324 -0.7106 -1.2303
13 8 2.7270 -1.6929 -1.1194
14 8 1.7082 -0.2520 -2.4495
15 6 2.2269 -0.9867 -3.5896
16 1 2.3280 -2.0449 -3.3487
17 6 1.3087 -0.7967 -4.8191
18 6 2.3339 -0.7492 -5.9736
19 7 3.5871 -0.2868 -5.3656
20 6 3.5569 -0.4140 -4.0278
21 8 4.4635 -0.1128 -3.2806
22 1 -0.3632 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5139 0.8899
25 1 0.7088 1.1616 3.4843
26 1 0.6307 -1.6425 -4.9340
27 1 0.7542 0.1393 -4.7510
28 1 2.0058 -0.0481 -6.7409
29 1 2.4669 -1.7423 -6.4028
30 1 4.3404 0.0655 -5.8650
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000851020840.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:22
Heat of formation + Delta-G solvation = -123.433716 kcal
Electronic energy + Delta-G solvation = -15906.043315 eV
Core-core repulsion = 13087.455432 eV
Total energy + Delta-G solvation = -2818.587883 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.58888 -38.94870 -36.39254 -35.48947 -33.84691 -30.98170 -30.29092 -27.29355
-25.17125 -23.28212 -22.09964 -20.67435 -19.65379 -17.47774 -16.93685 -16.51454
-15.91031 -15.58803 -14.95460 -14.52630 -14.10091 -13.75869 -13.33364 -12.89176
-12.69927 -12.33436 -12.28074 -11.63325 -11.07365 -11.02631 -10.92782 -10.71462
-10.68883 -10.27339 -10.01534 -9.43936 -9.23784 -9.07622 -9.01055 -8.40781
-6.06473 -4.11278 2.48411 3.12363 3.33724 3.36215 3.39977 3.45833
3.64081 4.29823 4.37127 4.45402 4.82161 4.85315 5.22644 5.26956
5.29839 5.64188 5.73252 6.16030 6.68303 6.70056 6.87260 6.89052
6.89725 7.18854 7.47302 7.77158 7.98447 8.17556 8.23864 8.86614
8.97683 9.53818 11.01194
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.051303 B = 0.006679 C = 0.006282
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 545.642588 B = 4190.933417 C = 4456.149390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.059 3.941
3 H 0.065 0.935
4 C -0.511 4.511
5 H 0.076 0.924
6 C 0.061 3.939
7 N -0.893 5.893
8 Si 0.906 3.094
9 H -0.279 1.279
10 H -0.286 1.286
11 H -0.272 1.272
12 C 0.466 3.534
13 O -0.506 6.506
14 O -0.343 6.343
15 C 0.050 3.950
16 H 0.116 0.884
17 C -0.127 4.127
18 C 0.105 3.895
19 N -0.734 5.734
20 C 0.506 3.494
21 O -0.506 6.506
22 H 0.023 0.977
23 H 0.032 0.968
24 H 0.096 0.904
25 H 0.263 0.737
26 H 0.099 0.901
27 H 0.099 0.901
28 H 0.084 0.916
29 H 0.074 0.926
30 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.911 -1.854 -16.636 16.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.040 3.960
3 H 0.083 0.917
4 C -0.549 4.549
5 H 0.094 0.906
6 C -0.140 4.140
7 N -0.532 5.532
8 Si 0.733 3.267
9 H -0.205 1.205
10 H -0.211 1.211
11 H -0.197 1.197
12 C 0.310 3.690
13 O -0.391 6.391
14 O -0.261 6.261
15 C -0.010 4.010
16 H 0.134 0.866
17 C -0.165 4.165
18 C -0.020 4.020
19 N -0.393 5.393
20 C 0.290 3.710
21 O -0.379 6.379
22 H 0.042 0.958
23 H 0.051 0.949
24 H 0.115 0.885
25 H 0.073 0.927
26 H 0.117 0.883
27 H 0.117 0.883
28 H 0.102 0.898
29 H 0.093 0.907
30 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -1.389 -1.946 -15.975 16.153
hybrid contribution 0.737 -0.379 0.416 0.927
sum -0.652 -2.325 -15.559 15.745
Atomic orbital electron populations
1.21741 0.95544 1.00058 1.01769 1.18775 0.94825 0.97057 0.85296
0.91729 1.21143 1.31747 1.13236 0.88731 0.90600 1.24935 0.94914
0.95057 0.99120 1.69882 1.36639 1.22853 1.23822 0.86361 0.78509
0.80154 0.81669 1.20509 1.21147 1.19677 1.25445 0.76525 0.83284
0.83717 1.90497 1.35657 1.26801 1.86171 1.86785 1.69175 1.55259
1.14854 1.23098 0.92124 0.98971 0.86797 0.86643 1.22739 0.97323
1.05489 0.90970 1.22053 0.83419 1.00476 0.96035 1.46073 1.18977
1.66527 1.07772 1.21159 0.89589 0.77642 0.82568 1.90807 1.41201
1.49014 1.56843 0.95778 0.94915 0.88506 0.92724 0.88264 0.88273
0.89756 0.90743 0.75061
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.18 8.90 37.16 0.33 -2.85 16
2 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16
3 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16
4 C -0.51 -14.85 8.37 -34.44 -0.29 -15.14 16
5 H 0.08 2.30 6.76 -52.49 -0.35 1.95 16
6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16
7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16
8 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16
9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
12 C 0.47 11.57 7.24 36.00 0.26 11.83 16
13 O -0.51 -13.64 14.73 -18.74 -0.28 -13.91 16
14 O -0.34 -7.09 9.86 -42.17 -0.42 -7.50 16
15 C 0.05 0.81 3.21 -26.74 -0.09 0.72 16
16 H 0.12 1.92 7.27 -51.93 -0.38 1.54 16
17 C -0.13 -1.26 6.92 -25.10 -0.17 -1.43 16
18 C 0.10 0.79 7.78 -3.13 -0.02 0.76 16
19 N -0.73 -8.26 6.24 -59.21 -0.37 -8.63 16
20 C 0.51 8.72 8.12 -10.86 -0.09 8.63 16
21 O -0.51 -11.41 18.03 1.45 0.03 -11.38 16
22 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16
23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
24 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16
25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.10 0.97 8.12 -51.93 -0.42 0.54 16
28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.41 3.75 8.96 -40.82 -0.37 3.39 16
LS Contribution 263.93 15.07 3.98 3.98
Total: -1.00 -34.88 263.93 -5.37 -40.25
By element:
Atomic # 1 Polarization: 2.98 SS G_CDS: -3.50 Total: -0.53 kcal
Atomic # 6 Polarization: 5.88 SS G_CDS: -0.42 Total: 5.46 kcal
Atomic # 7 Polarization: -33.65 SS G_CDS: 0.26 Total: -33.39 kcal
Atomic # 8 Polarization: -32.13 SS G_CDS: -0.67 Total: -32.80 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -34.88 -5.37 -40.25 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851020840.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.185 kcal
(2) G-P(sol) polarization free energy of solvation -34.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds