Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47423 * 2 1 4 4 C 1.50704 * 109.46832 * 119.99580 * 2 1 3 5 5 H 1.07999 * 120.00028 * 120.00071 * 4 2 1 6 6 C 1.37882 * 120.00111 * 300.00125 * 4 2 1 7 7 N 1.31518 * 119.99649 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47378 * 89.99994 * 8 6 4 10 10 H 1.48500 * 109.46961 * 209.99963 * 8 6 4 11 11 H 1.48507 * 109.47097 * 329.99695 * 8 6 4 12 12 C 1.50697 * 109.47374 * 239.99125 * 2 1 3 13 13 O 1.20818 * 120.00705 * 240.00075 * 12 2 1 14 14 O 1.34233 * 119.99413 * 60.00559 * 12 2 1 15 15 C 1.45208 * 116.99831 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.53768 * 31.15441 * 15 14 12 17 17 C 1.54625 * 110.48848 * 153.77169 * 15 14 12 18 18 C 1.54474 * 101.76763 * 143.47279 * 17 15 14 19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15 20 20 C 1.34417 * 111.30293 * 17.01799 * 19 18 17 21 21 O 1.21283 * 124.94747 * 179.63100 * 20 19 18 22 22 H 1.08998 * 109.46634 * 60.00345 * 1 2 3 23 23 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47533 * 300.00526 * 1 2 3 25 25 H 0.96996 * 119.99712 * 179.97438 * 7 6 4 26 26 H 1.09001 * 110.96806 * 261.59405 * 17 15 14 27 27 H 1.09007 * 110.96934 * 25.35387 * 17 15 14 28 28 H 1.08998 * 110.24827 * 215.58069 * 18 17 15 29 29 H 1.09000 * 110.31659 * 93.61957 * 18 17 15 30 30 H 0.97007 * 124.34929 * 197.03291 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6303 -0.5437 4.4121 10 1 1.3442 -0.9486 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0324 -0.7106 -1.2303 13 8 2.7270 -1.6929 -1.1194 14 8 1.7082 -0.2520 -2.4495 15 6 2.2269 -0.9867 -3.5896 16 1 2.3280 -2.0449 -3.3487 17 6 1.3087 -0.7967 -4.8191 18 6 2.3339 -0.7492 -5.9736 19 7 3.5871 -0.2868 -5.3656 20 6 3.5569 -0.4140 -4.0278 21 8 4.4635 -0.1128 -3.2806 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1616 3.4843 26 1 0.6307 -1.6425 -4.9340 27 1 0.7542 0.1393 -4.7510 28 1 2.0058 -0.0481 -6.7409 29 1 2.4669 -1.7423 -6.4028 30 1 4.3404 0.0655 -5.8650 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851020840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = -123.433716 kcal Electronic energy + Delta-G solvation = -15906.043315 eV Core-core repulsion = 13087.455432 eV Total energy + Delta-G solvation = -2818.587883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58888 -38.94870 -36.39254 -35.48947 -33.84691 -30.98170 -30.29092 -27.29355 -25.17125 -23.28212 -22.09964 -20.67435 -19.65379 -17.47774 -16.93685 -16.51454 -15.91031 -15.58803 -14.95460 -14.52630 -14.10091 -13.75869 -13.33364 -12.89176 -12.69927 -12.33436 -12.28074 -11.63325 -11.07365 -11.02631 -10.92782 -10.71462 -10.68883 -10.27339 -10.01534 -9.43936 -9.23784 -9.07622 -9.01055 -8.40781 -6.06473 -4.11278 2.48411 3.12363 3.33724 3.36215 3.39977 3.45833 3.64081 4.29823 4.37127 4.45402 4.82161 4.85315 5.22644 5.26956 5.29839 5.64188 5.73252 6.16030 6.68303 6.70056 6.87260 6.89052 6.89725 7.18854 7.47302 7.77158 7.98447 8.17556 8.23864 8.86614 8.97683 9.53818 11.01194 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.006679 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.642588 B = 4190.933417 C = 4456.149390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.511 4.511 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.506 6.506 14 O -0.343 6.343 15 C 0.050 3.950 16 H 0.116 0.884 17 C -0.127 4.127 18 C 0.105 3.895 19 N -0.734 5.734 20 C 0.506 3.494 21 O -0.506 6.506 22 H 0.023 0.977 23 H 0.032 0.968 24 H 0.096 0.904 25 H 0.263 0.737 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -1.854 -16.636 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.391 6.391 14 O -0.261 6.261 15 C -0.010 4.010 16 H 0.134 0.866 17 C -0.165 4.165 18 C -0.020 4.020 19 N -0.393 5.393 20 C 0.290 3.710 21 O -0.379 6.379 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.389 -1.946 -15.975 16.153 hybrid contribution 0.737 -0.379 0.416 0.927 sum -0.652 -2.325 -15.559 15.745 Atomic orbital electron populations 1.21741 0.95544 1.00058 1.01769 1.18775 0.94825 0.97057 0.85296 0.91729 1.21143 1.31747 1.13236 0.88731 0.90600 1.24935 0.94914 0.95057 0.99120 1.69882 1.36639 1.22853 1.23822 0.86361 0.78509 0.80154 0.81669 1.20509 1.21147 1.19677 1.25445 0.76525 0.83284 0.83717 1.90497 1.35657 1.26801 1.86171 1.86785 1.69175 1.55259 1.14854 1.23098 0.92124 0.98971 0.86797 0.86643 1.22739 0.97323 1.05489 0.90970 1.22053 0.83419 1.00476 0.96035 1.46073 1.18977 1.66527 1.07772 1.21159 0.89589 0.77642 0.82568 1.90807 1.41201 1.49014 1.56843 0.95778 0.94915 0.88506 0.92724 0.88264 0.88273 0.89756 0.90743 0.75061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.90 37.16 0.33 -2.85 16 2 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16 3 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 4 C -0.51 -14.85 8.37 -34.44 -0.29 -15.14 16 5 H 0.08 2.30 6.76 -52.49 -0.35 1.95 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.47 11.57 7.24 36.00 0.26 11.83 16 13 O -0.51 -13.64 14.73 -18.74 -0.28 -13.91 16 14 O -0.34 -7.09 9.86 -42.17 -0.42 -7.50 16 15 C 0.05 0.81 3.21 -26.74 -0.09 0.72 16 16 H 0.12 1.92 7.27 -51.93 -0.38 1.54 16 17 C -0.13 -1.26 6.92 -25.10 -0.17 -1.43 16 18 C 0.10 0.79 7.78 -3.13 -0.02 0.76 16 19 N -0.73 -8.26 6.24 -59.21 -0.37 -8.63 16 20 C 0.51 8.72 8.12 -10.86 -0.09 8.63 16 21 O -0.51 -11.41 18.03 1.45 0.03 -11.38 16 22 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 0.97 8.12 -51.93 -0.42 0.54 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.41 3.75 8.96 -40.82 -0.37 3.39 16 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -34.88 263.93 -5.37 -40.25 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.50 Total: -0.53 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.42 Total: 5.46 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.26 Total: -33.39 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.67 Total: -32.80 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.88 -5.37 -40.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851020840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.185 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds