Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47423 * 2 1 4 4 C 1.50704 * 109.46832 * 119.99580 * 2 1 3 5 5 H 1.07999 * 120.00028 * 120.00071 * 4 2 1 6 6 C 1.37882 * 120.00111 * 300.00125 * 4 2 1 7 7 N 1.31518 * 119.99649 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00010 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47378 * 89.99994 * 8 6 4 10 10 H 1.48500 * 109.46961 * 209.99963 * 8 6 4 11 11 H 1.48507 * 109.47097 * 329.99695 * 8 6 4 12 12 C 1.50697 * 109.47374 * 239.99125 * 2 1 3 13 13 O 1.20818 * 120.00705 * 240.00075 * 12 2 1 14 14 O 1.34233 * 119.99413 * 60.00559 * 12 2 1 15 15 C 1.45208 * 116.99831 * 180.02562 * 14 12 2 16 16 H 1.09001 * 110.53768 * 31.15441 * 15 14 12 17 17 C 1.54625 * 110.48848 * 153.77169 * 15 14 12 18 18 C 1.54474 * 101.76763 * 143.47279 * 17 15 14 19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15 20 20 C 1.34417 * 111.30293 * 17.01799 * 19 18 17 21 21 O 1.21283 * 124.94747 * 179.63100 * 20 19 18 22 22 H 1.08998 * 109.46634 * 60.00345 * 1 2 3 23 23 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47533 * 300.00526 * 1 2 3 25 25 H 0.96996 * 119.99712 * 179.97438 * 7 6 4 26 26 H 1.09001 * 110.96806 * 261.59405 * 17 15 14 27 27 H 1.09007 * 110.96934 * 25.35387 * 17 15 14 28 28 H 1.08998 * 110.24827 * 215.58069 * 18 17 15 29 29 H 1.09000 * 110.31659 * 93.61957 * 18 17 15 30 30 H 0.97007 * 124.34929 * 197.03291 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.6303 -0.5437 4.4121 10 1 1.3442 -0.9486 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0324 -0.7106 -1.2303 13 8 2.7270 -1.6929 -1.1194 14 8 1.7082 -0.2520 -2.4495 15 6 2.2269 -0.9867 -3.5896 16 1 2.3280 -2.0449 -3.3487 17 6 1.3087 -0.7967 -4.8191 18 6 2.3339 -0.7492 -5.9736 19 7 3.5871 -0.2868 -5.3656 20 6 3.5569 -0.4140 -4.0278 21 8 4.4635 -0.1128 -3.2806 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7088 1.1616 3.4843 26 1 0.6307 -1.6425 -4.9340 27 1 0.7542 0.1393 -4.7510 28 1 2.0058 -0.0481 -6.7409 29 1 2.4669 -1.7423 -6.4028 30 1 4.3404 0.0655 -5.8650 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851020840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = -149.821414 kcal Electronic energy + Delta-G solvation = -15907.187571 eV Core-core repulsion = 13087.455432 eV Total energy + Delta-G solvation = -2819.732140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.00827 -40.57909 -37.76649 -37.11316 -35.95078 -32.79089 -31.63751 -28.38662 -27.29473 -25.16538 -22.98287 -22.27544 -21.23454 -18.77731 -18.54700 -18.30692 -17.59449 -17.41176 -16.43750 -16.28245 -15.53058 -14.95398 -14.84577 -14.49596 -14.36409 -13.68855 -13.40887 -13.13294 -13.00198 -12.82096 -12.63881 -12.60539 -12.28151 -12.10043 -12.06310 -11.14654 -11.10556 -10.80654 -10.55464 -10.18526 -8.22007 -6.35413 1.10594 1.39480 1.40550 1.42717 1.53446 1.90882 2.32562 2.44758 3.07582 3.23697 3.41529 3.82444 3.97159 4.19008 4.46034 4.67053 4.74886 4.87862 4.92891 4.97504 5.06281 5.35821 5.44329 5.66909 5.68689 5.85996 5.89477 6.08701 6.70300 6.97245 7.07861 7.33053 8.84777 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.006679 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.642588 B = 4190.933417 C = 4456.149390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.050 3.950 3 H 0.043 0.957 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.965 3.035 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.275 1.275 12 C 0.472 3.528 13 O -0.537 6.537 14 O -0.341 6.341 15 C 0.032 3.968 16 H 0.108 0.892 17 C -0.115 4.115 18 C 0.104 3.896 19 N -0.710 5.710 20 C 0.491 3.509 21 O -0.577 6.577 22 H 0.053 0.947 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.269 0.731 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -2.158 -18.597 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.031 3.969 3 H 0.061 0.939 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.200 1.200 12 C 0.317 3.683 13 O -0.425 6.425 14 O -0.257 6.257 15 C -0.027 4.027 16 H 0.125 0.875 17 C -0.152 4.152 18 C -0.019 4.019 19 N -0.367 5.367 20 C 0.276 3.724 21 O -0.456 6.456 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.124 0.876 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.620 -2.232 -18.030 18.356 hybrid contribution 1.092 -0.265 0.849 1.408 sum -1.528 -2.497 -17.182 17.429 Atomic orbital electron populations 1.21552 0.93503 1.00284 1.02251 1.18705 0.96537 0.95698 0.85957 0.93889 1.21248 1.32737 1.13339 0.90635 0.92874 1.25656 0.94831 0.95703 1.01557 1.69958 1.36557 1.23294 1.24842 0.85446 0.78362 0.78732 0.78460 1.20151 1.19274 1.19969 1.24956 0.75873 0.82558 0.84892 1.90468 1.36886 1.28144 1.87021 1.86687 1.68792 1.55518 1.14713 1.23714 0.93921 0.97951 0.87100 0.87458 1.22941 0.97297 1.07256 0.87753 1.22499 0.80498 1.03367 0.95488 1.46056 1.20749 1.64131 1.05783 1.21461 0.89161 0.77493 0.84263 1.90765 1.43300 1.52488 1.59034 0.92799 0.94691 0.90343 0.92134 0.85054 0.87677 0.85639 0.87608 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16 2 C 0.05 2.74 2.74 -12.28 -0.03 2.70 16 3 H 0.04 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.54 -32.54 8.37 25.60 0.21 -32.33 16 5 H 0.05 3.37 6.76 -2.91 -0.02 3.35 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -51.92 11.32 21.45 0.24 -51.68 16 8 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.47 24.13 7.24 71.24 0.52 24.65 16 13 O -0.54 -30.14 14.73 21.99 0.32 -29.81 16 14 O -0.34 -14.12 9.86 -48.67 -0.48 -14.60 16 15 C 0.03 1.01 3.21 30.59 0.10 1.11 16 16 H 0.11 3.56 7.27 -2.39 -0.02 3.54 16 17 C -0.12 -1.82 6.92 31.65 0.22 -1.60 16 18 C 0.10 1.04 7.78 86.83 0.68 1.72 16 19 N -0.71 -14.13 6.24 -459.82 -2.87 -17.00 16 20 C 0.49 16.83 8.12 87.90 0.71 17.54 16 21 O -0.58 -27.12 18.03 0.88 0.02 -27.11 16 22 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.61 8.12 -2.38 -0.02 1.59 16 28 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.42 6.65 8.96 -92.70 -0.83 5.82 16 Total: -1.00 -80.27 263.93 3.09 -77.19 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.33 Total: 4.95 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 3.49 Total: 10.51 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -2.63 Total: -68.68 kcal Atomic # 8 Polarization: -71.38 SS G_CDS: -0.14 Total: -71.52 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -80.27 3.09 -77.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851020840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.636 kcal (2) G-P(sol) polarization free energy of solvation -80.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds