Wall clock time and date at job start Mon Mar 30 2020 03:31:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08992 * 109.47423 * 2 1
4 4 C 1.50704 * 109.46832 * 119.99580 * 2 1 3
5 5 H 1.07999 * 120.00028 * 120.00071 * 4 2 1
6 6 C 1.37882 * 120.00111 * 300.00125 * 4 2 1
7 7 N 1.31518 * 119.99649 * 359.97438 * 6 4 2
8 8 Si 1.86792 * 120.00010 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47378 * 89.99994 * 8 6 4
10 10 H 1.48500 * 109.46961 * 209.99963 * 8 6 4
11 11 H 1.48507 * 109.47097 * 329.99695 * 8 6 4
12 12 C 1.50697 * 109.47374 * 239.99125 * 2 1 3
13 13 O 1.20818 * 120.00705 * 240.00075 * 12 2 1
14 14 O 1.34233 * 119.99413 * 60.00559 * 12 2 1
15 15 C 1.45208 * 116.99831 * 180.02562 * 14 12 2
16 16 H 1.09001 * 110.53768 * 31.15441 * 15 14 12
17 17 C 1.54625 * 110.48848 * 153.77169 * 15 14 12
18 18 C 1.54474 * 101.76763 * 143.47279 * 17 15 14
19 19 N 1.46761 * 105.47258 * 334.58255 * 18 17 15
20 20 C 1.34417 * 111.30293 * 17.01799 * 19 18 17
21 21 O 1.21283 * 124.94747 * 179.63100 * 20 19 18
22 22 H 1.08998 * 109.46634 * 60.00345 * 1 2 3
23 23 H 1.09001 * 109.46900 * 180.02562 * 1 2 3
24 24 H 1.08996 * 109.47533 * 300.00526 * 1 2 3
25 25 H 0.96996 * 119.99712 * 179.97438 * 7 6 4
26 26 H 1.09001 * 110.96806 * 261.59405 * 17 15 14
27 27 H 1.09007 * 110.96934 * 25.35387 * 17 15 14
28 28 H 1.08998 * 110.24827 * 215.58069 * 18 17 15
29 29 H 1.09000 * 110.31659 * 93.61957 * 18 17 15
30 30 H 0.97007 * 124.34929 * 197.03291 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 1.2306
5 1 2.6532 -1.5885 1.1316
6 6 1.6991 -0.2392 2.4828
7 7 0.9434 0.8304 2.6034
8 14 2.3223 -1.1193 4.0081
9 1 3.6303 -0.5437 4.4121
10 1 1.3442 -0.9486 5.1123
11 1 2.4878 -2.5652 3.7124
12 6 2.0324 -0.7106 -1.2303
13 8 2.7270 -1.6929 -1.1194
14 8 1.7082 -0.2520 -2.4495
15 6 2.2269 -0.9867 -3.5896
16 1 2.3280 -2.0449 -3.3487
17 6 1.3087 -0.7967 -4.8191
18 6 2.3339 -0.7492 -5.9736
19 7 3.5871 -0.2868 -5.3656
20 6 3.5569 -0.4140 -4.0278
21 8 4.4635 -0.1128 -3.2806
22 1 -0.3632 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5139 0.8899
25 1 0.7088 1.1616 3.4843
26 1 0.6307 -1.6425 -4.9340
27 1 0.7542 0.1393 -4.7510
28 1 2.0058 -0.0481 -6.7409
29 1 2.4669 -1.7423 -6.4028
30 1 4.3404 0.0655 -5.8650
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000851020840.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:22
Heat of formation + Delta-G solvation = -149.821414 kcal
Electronic energy + Delta-G solvation = -15907.187571 eV
Core-core repulsion = 13087.455432 eV
Total energy + Delta-G solvation = -2819.732140 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-42.00827 -40.57909 -37.76649 -37.11316 -35.95078 -32.79089 -31.63751 -28.38662
-27.29473 -25.16538 -22.98287 -22.27544 -21.23454 -18.77731 -18.54700 -18.30692
-17.59449 -17.41176 -16.43750 -16.28245 -15.53058 -14.95398 -14.84577 -14.49596
-14.36409 -13.68855 -13.40887 -13.13294 -13.00198 -12.82096 -12.63881 -12.60539
-12.28151 -12.10043 -12.06310 -11.14654 -11.10556 -10.80654 -10.55464 -10.18526
-8.22007 -6.35413 1.10594 1.39480 1.40550 1.42717 1.53446 1.90882
2.32562 2.44758 3.07582 3.23697 3.41529 3.82444 3.97159 4.19008
4.46034 4.67053 4.74886 4.87862 4.92891 4.97504 5.06281 5.35821
5.44329 5.66909 5.68689 5.85996 5.89477 6.08701 6.70300 6.97245
7.07861 7.33053 8.84777
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.051303 B = 0.006679 C = 0.006282
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 545.642588 B = 4190.933417 C = 4456.149390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.050 3.950
3 H 0.043 0.957
4 C -0.542 4.542
5 H 0.053 0.947
6 C 0.023 3.977
7 N -0.908 5.908
8 Si 0.965 3.035
9 H -0.276 1.276
10 H -0.268 1.268
11 H -0.275 1.275
12 C 0.472 3.528
13 O -0.537 6.537
14 O -0.341 6.341
15 C 0.032 3.968
16 H 0.108 0.892
17 C -0.115 4.115
18 C 0.104 3.896
19 N -0.710 5.710
20 C 0.491 3.509
21 O -0.577 6.577
22 H 0.053 0.947
23 H 0.034 0.966
24 H 0.078 0.922
25 H 0.269 0.731
26 H 0.131 0.869
27 H 0.105 0.895
28 H 0.126 0.874
29 H 0.106 0.894
30 H 0.423 0.577
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.095 -2.158 -18.597 18.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.031 3.969
3 H 0.061 0.939
4 C -0.580 4.580
5 H 0.071 0.929
6 C -0.177 4.177
7 N -0.547 5.547
8 Si 0.790 3.210
9 H -0.202 1.202
10 H -0.193 1.193
11 H -0.200 1.200
12 C 0.317 3.683
13 O -0.425 6.425
14 O -0.257 6.257
15 C -0.027 4.027
16 H 0.125 0.875
17 C -0.152 4.152
18 C -0.019 4.019
19 N -0.367 5.367
20 C 0.276 3.724
21 O -0.456 6.456
22 H 0.072 0.928
23 H 0.053 0.947
24 H 0.097 0.903
25 H 0.079 0.921
26 H 0.149 0.851
27 H 0.123 0.877
28 H 0.144 0.856
29 H 0.124 0.876
30 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges -2.620 -2.232 -18.030 18.356
hybrid contribution 1.092 -0.265 0.849 1.408
sum -1.528 -2.497 -17.182 17.429
Atomic orbital electron populations
1.21552 0.93503 1.00284 1.02251 1.18705 0.96537 0.95698 0.85957
0.93889 1.21248 1.32737 1.13339 0.90635 0.92874 1.25656 0.94831
0.95703 1.01557 1.69958 1.36557 1.23294 1.24842 0.85446 0.78362
0.78732 0.78460 1.20151 1.19274 1.19969 1.24956 0.75873 0.82558
0.84892 1.90468 1.36886 1.28144 1.87021 1.86687 1.68792 1.55518
1.14713 1.23714 0.93921 0.97951 0.87100 0.87458 1.22941 0.97297
1.07256 0.87753 1.22499 0.80498 1.03367 0.95488 1.46056 1.20749
1.64131 1.05783 1.21461 0.89161 0.77493 0.84263 1.90765 1.43300
1.52488 1.59034 0.92799 0.94691 0.90343 0.92134 0.85054 0.87677
0.85639 0.87608 0.73623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16
2 C 0.05 2.74 2.74 -12.28 -0.03 2.70 16
3 H 0.04 2.50 8.14 -2.39 -0.02 2.48 16
4 C -0.54 -32.54 8.37 25.60 0.21 -32.33 16
5 H 0.05 3.37 6.76 -2.91 -0.02 3.35 16
6 C 0.02 1.28 5.30 84.66 0.45 1.73 16
7 N -0.91 -51.92 11.32 21.45 0.24 -51.68 16
8 Si 0.97 45.53 29.54 68.60 2.03 47.55 16
9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16
11 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16
12 C 0.47 24.13 7.24 71.24 0.52 24.65 16
13 O -0.54 -30.14 14.73 21.99 0.32 -29.81 16
14 O -0.34 -14.12 9.86 -48.67 -0.48 -14.60 16
15 C 0.03 1.01 3.21 30.59 0.10 1.11 16
16 H 0.11 3.56 7.27 -2.39 -0.02 3.54 16
17 C -0.12 -1.82 6.92 31.65 0.22 -1.60 16
18 C 0.10 1.04 7.78 86.83 0.68 1.72 16
19 N -0.71 -14.13 6.24 -459.82 -2.87 -17.00 16
20 C 0.49 16.83 8.12 87.90 0.71 17.54 16
21 O -0.58 -27.12 18.03 0.88 0.02 -27.11 16
22 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16
23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16
24 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16
25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16
26 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16
27 H 0.10 1.61 8.12 -2.38 -0.02 1.59 16
28 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16
29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16
30 H 0.42 6.65 8.96 -92.70 -0.83 5.82 16
Total: -1.00 -80.27 263.93 3.09 -77.19
By element:
Atomic # 1 Polarization: 4.62 SS G_CDS: 0.33 Total: 4.95 kcal
Atomic # 6 Polarization: 7.01 SS G_CDS: 3.49 Total: 10.51 kcal
Atomic # 7 Polarization: -66.05 SS G_CDS: -2.63 Total: -68.68 kcal
Atomic # 8 Polarization: -71.38 SS G_CDS: -0.14 Total: -71.52 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal
Total: -80.27 3.09 -77.19 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000851020840.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.636 kcal
(2) G-P(sol) polarization free energy of solvation -80.270 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.821 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds