Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.61256 * 34.29705 * 15 14 12 17 17 C 1.54263 * 110.69035 * 271.23809 * 15 14 12 18 18 O 1.45594 * 106.36916 * 240.52289 * 17 15 14 19 19 C 1.34525 * 109.63528 * 21.26160 * 18 17 15 20 20 O 1.20827 * 126.42689 * 147.17136 * 19 18 17 21 21 C 1.52232 * 107.15948 * 327.12087 * 19 18 17 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 27 27 H 1.09004 * 110.07744 * 359.74542 * 17 15 14 28 28 H 1.08997 * 110.07919 * 121.24014 * 17 15 14 29 29 H 1.08997 * 110.70050 * 272.26189 * 21 19 18 30 30 H 1.09000 * 110.72781 * 149.13629 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 1 2.2500 -2.0153 -3.4776 17 6 3.5691 -0.3858 -4.0781 18 8 3.3966 0.1478 -5.4217 19 6 2.0950 0.4075 -5.6413 20 8 1.6463 1.2965 -6.3256 21 6 1.2933 -0.6293 -4.8669 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7006 1.1552 3.4844 26 1 1.1493 0.5391 -2.5435 27 1 3.8806 0.4069 -3.3979 28 1 4.3098 -1.1854 -4.0845 29 1 1.1384 -1.5247 -5.4688 30 1 0.3392 -0.2148 -4.5413 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854553160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = -121.875746 kcal Electronic energy + Delta-G solvation = -15720.247534 eV Core-core repulsion = 12901.727210 eV Total energy + Delta-G solvation = -2818.520325 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08806 -38.89923 -37.51577 -34.69808 -33.84315 -31.31418 -29.92790 -27.97992 -25.21505 -23.37801 -21.59176 -21.38291 -19.72950 -17.33100 -17.02636 -16.49939 -16.25661 -16.01978 -15.40962 -14.54242 -14.15813 -13.80207 -13.55558 -13.04580 -12.71259 -12.68167 -12.13889 -11.99696 -11.58978 -11.07994 -10.81035 -10.77416 -10.73256 -10.37046 -10.33324 -10.03634 -9.06920 -8.86139 -8.75979 -8.42191 -6.10023 -4.14077 1.75798 3.21896 3.29453 3.35633 3.39974 3.44391 3.50556 3.86099 4.22664 4.41191 4.52530 4.91713 5.10367 5.23498 5.36783 5.53745 5.58987 6.09566 6.50137 6.53330 6.72304 6.75802 6.84488 7.26703 7.36807 7.66288 7.85573 8.01408 8.27548 8.94141 9.00515 9.52029 10.97481 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.055197 B = 0.005986 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.152729 B = 4676.492652 C = 4918.961103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.029 3.971 3 H 0.054 0.946 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.540 6.540 14 N -0.742 5.742 15 C 0.114 3.886 16 H 0.119 0.881 17 C 0.044 3.956 18 O -0.357 6.357 19 C 0.488 3.512 20 O -0.450 6.450 21 C -0.194 4.194 22 H 0.094 0.906 23 H 0.012 0.988 24 H 0.032 0.968 25 H 0.262 0.738 26 H 0.400 0.600 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 -1.878 -11.380 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 H 0.072 0.928 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.414 6.414 14 N -0.398 5.398 15 C 0.007 3.993 16 H 0.137 0.863 17 C -0.032 4.032 18 O -0.274 6.274 19 C 0.327 3.673 20 O -0.332 6.332 21 C -0.233 4.233 22 H 0.113 0.887 23 H 0.031 0.969 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.235 0.765 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.448 -2.041 -11.588 11.774 hybrid contribution -0.047 -0.091 0.849 0.855 sum 0.401 -2.132 -10.738 10.955 Atomic orbital electron populations 1.21759 0.96371 0.99919 1.01106 1.18907 0.94286 0.96926 0.89065 0.92801 1.21119 1.31167 1.13012 0.88920 0.90722 1.24953 0.95010 0.95060 0.99186 1.69861 1.36843 1.23097 1.23686 0.86437 0.78459 0.80235 0.81998 1.20628 1.21267 1.19732 1.22144 0.78131 0.84131 0.84263 1.90546 1.37666 1.26638 1.86593 1.46495 1.55689 1.32651 1.04924 1.21909 0.91583 1.00375 0.85431 0.86281 1.24659 0.99311 1.00336 0.78874 1.87084 1.28289 1.77893 1.34141 1.23410 0.82553 0.82633 0.78664 1.90711 1.73758 1.30883 1.37868 1.23398 1.01117 1.01029 0.97757 0.88702 0.96877 0.94887 0.92856 0.76491 0.88790 0.86893 0.85615 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.86 37.16 0.33 -2.56 16 2 C 0.03 0.68 2.64 -92.92 -0.25 0.44 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -13.66 8.38 -34.44 -0.29 -13.94 16 5 H 0.07 2.13 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.43 11.31 55.43 0.63 -23.80 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.52 10.67 7.15 -10.98 -0.08 10.59 16 13 O -0.54 -12.59 15.14 5.56 0.08 -12.50 16 14 N -0.74 -11.05 4.92 -52.38 -0.26 -11.31 16 15 C 0.11 1.36 3.45 -66.46 -0.23 1.13 16 16 H 0.12 1.46 7.62 -51.93 -0.40 1.07 16 17 C 0.04 0.51 7.71 37.82 0.29 0.80 16 18 O -0.36 -4.59 11.07 -39.60 -0.44 -5.03 16 19 C 0.49 6.24 8.58 36.77 0.32 6.55 16 20 O -0.45 -7.13 18.00 -18.29 -0.33 -7.46 16 21 C -0.19 -1.87 6.69 -26.32 -0.18 -2.05 16 22 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 23 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.40 5.27 7.93 -40.82 -0.32 4.94 16 27 H 0.09 1.17 7.95 -51.93 -0.41 0.76 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -31.11 262.71 -4.98 -36.09 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.43 Total: 1.45 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.18 Total: 2.45 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.37 Total: -35.11 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.68 Total: -24.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.11 -4.98 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854553160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.785 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds