Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.61256 * 34.29705 * 15 14 12 17 17 C 1.54263 * 110.69035 * 271.23809 * 15 14 12 18 18 O 1.45594 * 106.36916 * 240.52289 * 17 15 14 19 19 C 1.34525 * 109.63528 * 21.26160 * 18 17 15 20 20 O 1.20827 * 126.42689 * 147.17136 * 19 18 17 21 21 C 1.52232 * 107.15948 * 327.12087 * 19 18 17 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 0.97002 * 120.00040 * 0.02562 * 14 12 2 27 27 H 1.09004 * 110.07744 * 359.74542 * 17 15 14 28 28 H 1.08997 * 110.07919 * 121.24014 * 17 15 14 29 29 H 1.08997 * 110.70050 * 272.26189 * 21 19 18 30 30 H 1.09000 * 110.72781 * 149.13629 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 1 2.2500 -2.0153 -3.4776 17 6 3.5691 -0.3858 -4.0781 18 8 3.3966 0.1478 -5.4217 19 6 2.0950 0.4075 -5.6413 20 8 1.6463 1.2965 -6.3256 21 6 1.2933 -0.6293 -4.8669 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7006 1.1552 3.4844 26 1 1.1493 0.5391 -2.5435 27 1 3.8806 0.4069 -3.3979 28 1 4.3098 -1.1854 -4.0845 29 1 1.1384 -1.5247 -5.4688 30 1 0.3392 -0.2148 -4.5413 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854553160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = -143.434028 kcal Electronic energy + Delta-G solvation = -15721.182371 eV Core-core repulsion = 12901.727210 eV Total energy + Delta-G solvation = -2819.455162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12822 -40.40780 -38.63870 -36.00010 -35.72383 -32.91689 -31.36782 -28.96179 -27.17657 -24.92745 -22.79847 -22.41939 -21.24112 -18.59339 -18.23171 -17.99681 -17.65306 -17.30642 -16.76404 -16.36184 -15.68932 -15.06072 -14.73781 -14.48642 -14.18910 -13.86701 -13.50869 -13.15114 -12.95684 -12.88835 -12.66624 -12.57532 -12.16942 -12.00089 -11.73594 -11.39057 -11.01940 -10.60756 -10.32559 -10.14009 -8.13789 -6.24086 0.76754 1.42531 1.44183 1.54962 1.86339 2.18170 2.28619 2.48396 2.93487 3.16540 3.27838 3.56620 4.00007 4.30249 4.32937 4.56571 4.72008 4.76301 4.79818 4.96844 5.04846 5.41670 5.51869 5.64108 5.76871 5.95578 6.22531 6.27573 6.65471 6.86268 7.39640 7.49770 8.91767 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.055197 B = 0.005986 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.152729 B = 4676.492652 C = 4918.961103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.020 3.980 3 H 0.041 0.959 4 C -0.527 4.527 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.573 6.573 14 N -0.723 5.723 15 C 0.112 3.888 16 H 0.124 0.876 17 C 0.046 3.954 18 O -0.366 6.366 19 C 0.487 3.513 20 O -0.486 6.486 21 C -0.173 4.173 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.411 0.589 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 -2.418 -12.180 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.001 4.001 3 H 0.059 0.941 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.452 6.452 14 N -0.377 5.377 15 C 0.006 3.994 16 H 0.142 0.858 17 C -0.029 4.029 18 O -0.284 6.284 19 C 0.329 3.671 20 O -0.371 6.371 21 C -0.211 4.211 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.248 0.752 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.179 0.821 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.004 -2.559 -12.419 12.680 hybrid contribution 0.117 0.106 1.043 1.055 sum 0.121 -2.453 -11.376 11.638 Atomic orbital electron populations 1.21573 0.95026 0.99644 1.01750 1.18844 0.95421 0.96055 0.89770 0.94092 1.21312 1.31385 1.12816 0.90988 0.92897 1.25589 0.95221 0.95757 1.01499 1.69949 1.37240 1.23754 1.24245 0.85616 0.78228 0.78937 0.79234 1.20195 1.20349 1.20100 1.21437 0.77915 0.83493 0.85184 1.90530 1.39278 1.28054 1.87301 1.46158 1.54685 1.32572 1.04331 1.22086 0.92359 1.00199 0.84736 0.85823 1.24661 0.99547 1.00473 0.78198 1.87081 1.28901 1.77893 1.34527 1.23884 0.82765 0.82430 0.78042 1.90699 1.74287 1.32458 1.39657 1.23387 1.00333 1.01247 0.96173 0.91401 0.92822 0.95472 0.92709 0.75209 0.89812 0.85072 0.82132 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.86 71.98 0.64 -4.51 16 2 C 0.02 0.94 2.64 -12.29 -0.03 0.91 16 3 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 4 C -0.53 -28.88 8.38 25.60 0.21 -28.67 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -49.86 11.31 21.45 0.24 -49.62 16 8 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.53 21.14 7.15 87.66 0.63 21.76 16 13 O -0.57 -26.52 15.14 -3.04 -0.05 -26.56 16 14 N -0.72 -19.91 4.92 -438.04 -2.15 -22.07 16 15 C 0.11 2.36 3.45 45.94 0.16 2.52 16 16 H 0.12 2.66 7.62 -2.39 -0.02 2.64 16 17 C 0.05 0.98 7.71 72.41 0.56 1.54 16 18 O -0.37 -8.72 11.07 -54.74 -0.61 -9.33 16 19 C 0.49 11.36 8.58 71.73 0.62 11.98 16 20 O -0.49 -14.75 18.00 21.51 0.39 -14.36 16 21 C -0.17 -2.70 6.69 30.86 0.21 -2.49 16 22 H 0.07 3.26 6.06 -2.38 -0.01 3.25 16 23 H 0.05 1.77 7.56 -2.38 -0.02 1.75 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.41 9.68 7.93 -92.71 -0.74 8.95 16 27 H 0.08 1.98 7.95 -2.39 -0.02 1.96 16 28 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.13 1.78 7.90 -2.39 -0.02 1.76 16 Total: -1.00 -67.46 262.71 3.71 -63.75 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.43 Total: 8.22 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.43 Total: 4.48 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.91 Total: -71.69 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.26 Total: -50.26 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -67.46 3.71 -63.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854553160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.684 kcal (2) G-P(sol) polarization free energy of solvation -67.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds