Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 O 1.21277 * 119.99812 * 120.00556 * 12 2 1 14 14 N 1.34776 * 119.99977 * 300.00436 * 12 2 1 15 15 C 1.46500 * 120.00321 * 179.97438 * 14 12 2 16 16 H 1.09004 * 110.61193 * 34.30089 * 15 14 12 17 17 C 1.54259 * 110.69277 * 271.23492 * 15 14 12 18 18 O 1.45591 * 106.36855 * 240.52036 * 17 15 14 19 19 C 1.34526 * 109.63523 * 21.26714 * 18 17 15 20 20 O 1.20823 * 126.42639 * 147.17209 * 19 18 17 21 21 C 1.52228 * 107.15749 * 327.11773 * 19 18 17 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 0.97005 * 120.00166 * 359.97438 * 14 12 2 27 27 H 1.08998 * 110.07237 * 359.74771 * 17 15 14 28 28 H 1.08995 * 110.07455 * 121.23402 * 17 15 14 29 29 H 1.09004 * 110.69386 * 272.25943 * 21 19 18 30 30 H 1.09000 * 110.72695 * 149.14578 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1947 -0.9409 3.6507 16 1 3.1893 -1.3520 3.4776 17 6 1.2126 -2.0513 4.0776 18 8 0.7671 -1.7107 5.4211 19 6 0.9569 -0.3972 5.6410 20 8 0.2687 0.3224 6.3254 21 6 2.2021 0.0123 4.8670 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7087 1.1613 -3.4844 26 1 1.1493 0.5389 2.5436 27 1 0.3616 -2.0799 3.3971 28 1 1.7189 -3.0165 4.0837 29 1 3.0977 -0.1408 5.4692 30 1 2.1301 1.0502 4.5417 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854553161.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = -143.356743 kcal Electronic energy + Delta-G solvation = -15747.360775 eV Core-core repulsion = 12927.908964 eV Total energy + Delta-G solvation = -2819.451811 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12804 -40.40851 -38.63713 -35.99994 -35.72429 -32.92047 -31.36705 -28.96909 -27.18516 -24.90588 -22.82045 -22.43330 -21.21422 -18.58746 -18.27480 -17.99695 -17.64239 -17.26950 -16.76703 -16.31515 -15.80492 -14.95400 -14.73043 -14.51138 -14.27172 -13.80606 -13.50746 -13.17562 -12.95769 -12.88997 -12.67228 -12.57682 -12.18771 -11.99459 -11.73333 -11.38918 -11.03152 -10.60368 -10.32757 -10.14154 -8.13649 -6.23956 0.76921 1.44229 1.44726 1.53122 1.86311 2.18254 2.28745 2.48510 2.93595 3.16542 3.27997 3.56630 3.99940 4.30321 4.32944 4.56808 4.71730 4.75835 4.78260 4.94855 5.03732 5.41624 5.50950 5.64312 5.76251 5.94641 6.21825 6.27715 6.65399 6.86122 7.39608 7.49758 8.91775 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.057249 B = 0.005998 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.975000 B = 4667.283018 C = 4880.639996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.021 3.979 3 H 0.044 0.956 4 C -0.528 4.528 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.573 6.573 14 N -0.723 5.723 15 C 0.112 3.888 16 H 0.124 0.876 17 C 0.046 3.954 18 O -0.366 6.366 19 C 0.487 3.513 20 O -0.486 6.486 21 C -0.173 4.173 22 H 0.068 0.932 23 H 0.024 0.976 24 H 0.050 0.950 25 H 0.264 0.736 26 H 0.411 0.589 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.161 0.839 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -0.986 12.156 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.000 4.000 3 H 0.062 0.938 4 C -0.566 4.566 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.451 6.451 14 N -0.378 5.378 15 C 0.006 3.994 16 H 0.142 0.858 17 C -0.029 4.029 18 O -0.284 6.284 19 C 0.329 3.671 20 O -0.371 6.371 21 C -0.212 4.212 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.248 0.752 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.179 0.821 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.678 -1.396 12.393 12.584 hybrid contribution -0.062 -0.024 -1.033 1.035 sum 1.616 -1.420 11.360 11.562 Atomic orbital electron populations 1.21580 0.95277 0.99518 1.01652 1.18828 0.95151 0.96221 0.89764 0.93833 1.21282 1.31540 1.12803 0.90984 0.92876 1.25592 0.95234 0.95724 1.01494 1.69946 1.37236 1.23661 1.24321 0.85671 0.78718 0.78718 0.78902 1.20392 1.20059 1.20155 1.21435 0.77828 0.83589 0.85181 1.90528 1.39240 1.28083 1.87296 1.46161 1.54643 1.32617 1.04336 1.22088 0.99970 0.92596 0.84734 0.85811 1.24655 0.98941 1.01069 0.78203 1.87081 1.80608 1.26174 1.34520 1.23876 0.84787 0.80406 0.78039 1.90698 1.52377 1.54367 1.39645 1.23388 0.98532 1.03056 0.96187 0.91306 0.95634 0.93129 0.92695 0.75212 0.89790 0.85104 0.82127 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.23 8.87 71.98 0.64 -4.59 16 2 C 0.02 1.00 2.64 -12.29 -0.03 0.97 16 3 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 4 C -0.53 -28.92 8.37 25.60 0.21 -28.70 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -49.84 11.32 21.45 0.24 -49.59 16 8 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.53 21.13 7.15 87.66 0.63 21.76 16 13 O -0.57 -26.48 15.14 -3.02 -0.05 -26.52 16 14 N -0.72 -19.93 4.92 -438.05 -2.15 -22.09 16 15 C 0.11 2.36 3.45 45.94 0.16 2.52 16 16 H 0.12 2.66 7.62 -2.39 -0.02 2.64 16 17 C 0.05 0.99 7.71 72.41 0.56 1.54 16 18 O -0.37 -8.72 11.07 -54.75 -0.61 -9.32 16 19 C 0.49 11.36 8.58 71.73 0.62 11.98 16 20 O -0.49 -14.74 18.00 21.53 0.39 -14.35 16 21 C -0.17 -2.70 6.69 30.86 0.21 -2.50 16 22 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16 25 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 26 H 0.41 9.70 7.93 -92.70 -0.74 8.96 16 27 H 0.08 1.99 7.95 -2.39 -0.02 1.97 16 28 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.13 1.79 7.90 -2.39 -0.02 1.77 16 Total: -1.00 -67.23 262.73 3.72 -63.51 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.43 Total: 8.47 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 3.43 Total: 4.44 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.91 Total: -71.68 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.26 Total: -50.20 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.23 3.72 -63.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854553161.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.844 kcal (2) G-P(sol) polarization free energy of solvation -67.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds