Wall clock time and date at job start Mon Mar 30 2020 03:31:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47141 * 2 1
4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3
5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1
6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1
7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2
9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4
10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4
11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4
12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3
13 13 O 1.21277 * 119.99812 * 120.00556 * 12 2 1
14 14 N 1.34776 * 119.99977 * 300.00436 * 12 2 1
15 15 C 1.46500 * 120.00321 * 179.97438 * 14 12 2
16 16 H 1.09004 * 110.61193 * 34.30089 * 15 14 12
17 17 C 1.54259 * 110.69277 * 271.23492 * 15 14 12
18 18 O 1.45591 * 106.36855 * 240.52036 * 17 15 14
19 19 C 1.34526 * 109.63523 * 21.26714 * 18 17 15
20 20 O 1.20823 * 126.42639 * 147.17209 * 19 18 17
21 21 C 1.52228 * 107.15749 * 327.11773 * 19 18 17
22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3
23 23 H 1.09002 * 109.46412 * 180.02562 * 1 2 3
24 24 H 1.08993 * 109.47298 * 299.99300 * 1 2 3
25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4
26 26 H 0.97005 * 120.00166 * 359.97438 * 14 12 2
27 27 H 1.08998 * 110.07237 * 359.74771 * 17 15 14
28 28 H 1.08995 * 110.07455 * 121.23402 * 17 15 14
29 29 H 1.09004 * 110.69386 * 272.25943 * 21 19 18
30 30 H 1.09000 * 110.72695 * 149.14578 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2304
5 1 2.6533 -1.5883 -1.1314
6 6 1.6993 -0.2393 -2.4828
7 7 0.9427 0.8297 -2.6033
8 14 2.3226 -1.1193 -4.0080
9 1 1.8270 -0.4197 -5.2204
10 1 3.8075 -1.1187 -4.0078
11 1 1.8282 -2.5196 -4.0082
12 6 2.0324 -0.7104 1.2304
13 8 2.7298 -1.6964 1.1191
14 7 1.7068 -0.2500 2.4546
15 6 2.1947 -0.9409 3.6507
16 1 3.1893 -1.3520 3.4776
17 6 1.2126 -2.0513 4.0776
18 8 0.7671 -1.7107 5.4211
19 6 0.9569 -0.3972 5.6410
20 8 0.2687 0.3224 6.3254
21 6 2.2021 0.0123 4.8670
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3632 -1.0277 0.0005
24 1 -0.3633 0.5137 0.8900
25 1 0.7087 1.1613 -3.4844
26 1 1.1493 0.5389 2.5436
27 1 0.3616 -2.0799 3.3971
28 1 1.7189 -3.0165 4.0837
29 1 3.0977 -0.1408 5.4692
30 1 2.1301 1.0502 4.5417
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000854553161.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:20
Heat of formation + Delta-G solvation = -143.356743 kcal
Electronic energy + Delta-G solvation = -15747.360775 eV
Core-core repulsion = 12927.908964 eV
Total energy + Delta-G solvation = -2819.451811 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.12804 -40.40851 -38.63713 -35.99994 -35.72429 -32.92047 -31.36705 -28.96909
-27.18516 -24.90588 -22.82045 -22.43330 -21.21422 -18.58746 -18.27480 -17.99695
-17.64239 -17.26950 -16.76703 -16.31515 -15.80492 -14.95400 -14.73043 -14.51138
-14.27172 -13.80606 -13.50746 -13.17562 -12.95769 -12.88997 -12.67228 -12.57682
-12.18771 -11.99459 -11.73333 -11.38918 -11.03152 -10.60368 -10.32757 -10.14154
-8.13649 -6.23956 0.76921 1.44229 1.44726 1.53122 1.86311 2.18254
2.28745 2.48510 2.93595 3.16542 3.27997 3.56630 3.99940 4.30321
4.32944 4.56808 4.71730 4.75835 4.78260 4.94855 5.03732 5.41624
5.50950 5.64312 5.76251 5.94641 6.21825 6.27715 6.65399 6.86122
7.39608 7.49758 8.91775
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.057249 B = 0.005998 C = 0.005736
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 488.975000 B = 4667.283018 C = 4880.639996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.021 3.979
3 H 0.044 0.956
4 C -0.528 4.528
5 H 0.053 0.947
6 C 0.019 3.981
7 N -0.912 5.912
8 Si 0.954 3.046
9 H -0.279 1.279
10 H -0.275 1.275
11 H -0.276 1.276
12 C 0.530 3.470
13 O -0.573 6.573
14 N -0.723 5.723
15 C 0.112 3.888
16 H 0.124 0.876
17 C 0.046 3.954
18 O -0.366 6.366
19 C 0.487 3.513
20 O -0.486 6.486
21 C -0.173 4.173
22 H 0.068 0.932
23 H 0.024 0.976
24 H 0.050 0.950
25 H 0.264 0.736
26 H 0.411 0.589
27 H 0.084 0.916
28 H 0.131 0.869
29 H 0.161 0.839
30 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.678 -0.986 12.156 12.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.000 4.000
3 H 0.062 0.938
4 C -0.566 4.566
5 H 0.071 0.929
6 C -0.180 4.180
7 N -0.552 5.552
8 Si 0.780 3.220
9 H -0.204 1.204
10 H -0.201 1.201
11 H -0.202 1.202
12 C 0.320 3.680
13 O -0.451 6.451
14 N -0.378 5.378
15 C 0.006 3.994
16 H 0.142 0.858
17 C -0.029 4.029
18 O -0.284 6.284
19 C 0.329 3.671
20 O -0.371 6.371
21 C -0.212 4.212
22 H 0.087 0.913
23 H 0.044 0.956
24 H 0.069 0.931
25 H 0.073 0.927
26 H 0.248 0.752
27 H 0.102 0.898
28 H 0.149 0.851
29 H 0.179 0.821
30 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 1.678 -1.396 12.393 12.584
hybrid contribution -0.062 -0.024 -1.033 1.035
sum 1.616 -1.420 11.360 11.562
Atomic orbital electron populations
1.21580 0.95277 0.99518 1.01652 1.18828 0.95151 0.96221 0.89764
0.93833 1.21282 1.31540 1.12803 0.90984 0.92876 1.25592 0.95234
0.95724 1.01494 1.69946 1.37236 1.23661 1.24321 0.85671 0.78718
0.78718 0.78902 1.20392 1.20059 1.20155 1.21435 0.77828 0.83589
0.85181 1.90528 1.39240 1.28083 1.87296 1.46161 1.54643 1.32617
1.04336 1.22088 0.99970 0.92596 0.84734 0.85811 1.24655 0.98941
1.01069 0.78203 1.87081 1.80608 1.26174 1.34520 1.23876 0.84787
0.80406 0.78039 1.90698 1.52377 1.54367 1.39645 1.23388 0.98532
1.03056 0.96187 0.91306 0.95634 0.93129 0.92695 0.75212 0.89790
0.85104 0.82127 0.85128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.23 8.87 71.98 0.64 -4.59 16
2 C 0.02 1.00 2.64 -12.29 -0.03 0.97 16
3 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16
4 C -0.53 -28.92 8.37 25.60 0.21 -28.70 16
5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16
6 C 0.02 1.01 5.30 84.66 0.45 1.46 16
7 N -0.91 -49.84 11.32 21.45 0.24 -49.59 16
8 Si 0.95 43.43 29.54 68.60 2.03 45.46 16
9 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
12 C 0.53 21.13 7.15 87.66 0.63 21.76 16
13 O -0.57 -26.48 15.14 -3.02 -0.05 -26.52 16
14 N -0.72 -19.93 4.92 -438.05 -2.15 -22.09 16
15 C 0.11 2.36 3.45 45.94 0.16 2.52 16
16 H 0.12 2.66 7.62 -2.39 -0.02 2.64 16
17 C 0.05 0.99 7.71 72.41 0.56 1.54 16
18 O -0.37 -8.72 11.07 -54.75 -0.61 -9.32 16
19 C 0.49 11.36 8.58 71.73 0.62 11.98 16
20 O -0.49 -14.74 18.00 21.53 0.39 -14.35 16
21 C -0.17 -2.70 6.69 30.86 0.21 -2.50 16
22 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16
23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16
24 H 0.05 1.72 7.56 -2.39 -0.02 1.70 16
25 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16
26 H 0.41 9.70 7.93 -92.70 -0.74 8.96 16
27 H 0.08 1.99 7.95 -2.39 -0.02 1.97 16
28 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16
29 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16
30 H 0.13 1.79 7.90 -2.39 -0.02 1.77 16
Total: -1.00 -67.23 262.73 3.72 -63.51
By element:
Atomic # 1 Polarization: 8.04 SS G_CDS: 0.43 Total: 8.47 kcal
Atomic # 6 Polarization: 1.00 SS G_CDS: 3.43 Total: 4.44 kcal
Atomic # 7 Polarization: -69.77 SS G_CDS: -1.91 Total: -71.68 kcal
Atomic # 8 Polarization: -49.93 SS G_CDS: -0.26 Total: -50.20 kcal
Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal
Total: -67.23 3.72 -63.51 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000854553161.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.844 kcal
(2) G-P(sol) polarization free energy of solvation -67.228 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -143.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds