Wall clock time and date at job start Mon Mar 30 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46807 * 60.00091 * 8 6 4 10 10 H 1.48498 * 109.47276 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47057 * 299.99983 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09007 * 110.36693 * 32.66679 * 15 14 12 17 17 C 1.54479 * 110.40399 * 154.99675 * 15 14 12 18 18 C 1.54370 * 103.04324 * 119.16189 * 17 15 14 19 19 O 1.45942 * 105.06970 * 17.81810 * 18 17 15 20 20 C 1.34562 * 108.40607 * 327.55867 * 19 18 17 21 21 O 1.20829 * 125.94730 * 213.35515 * 20 19 18 22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 25 25 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 26 26 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 27 27 H 1.08994 * 110.69991 * 237.55034 * 17 15 14 28 28 H 1.09002 * 110.69730 * 0.76900 * 17 15 14 29 29 H 1.08998 * 110.32412 * 136.72054 * 18 17 15 30 30 H 1.09003 * 110.31967 * 258.92139 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9426 0.8299 2.6033 8 14 2.3213 -1.1200 4.0081 9 1 3.8063 -1.1205 4.0083 10 1 1.8258 -0.4202 5.2205 11 1 1.8257 -2.5199 4.0080 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 2.2861 -2.0053 -3.4661 17 6 1.2708 -0.6636 -4.8509 18 6 2.1992 0.0412 -5.8629 19 8 3.5533 -0.2670 -5.4141 20 6 3.5442 -0.3649 -4.0721 21 8 4.4468 -0.0529 -3.3320 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7086 1.1615 3.4843 26 1 1.1537 0.5418 -2.5435 27 1 0.8917 -1.5990 -5.2624 28 1 0.4496 -0.0085 -4.5601 29 1 2.0340 -0.3522 -6.8659 30 1 2.0304 1.1180 -5.8452 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261878880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:15 Heat of formation + Delta-G solvation = -118.550814 kcal Electronic energy + Delta-G solvation = -15899.879370 eV Core-core repulsion = 13081.503225 eV Total energy + Delta-G solvation = -2818.376145 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03654 -38.61864 -37.34383 -34.61634 -33.74994 -31.46191 -30.18051 -27.33484 -25.14068 -22.93699 -22.48273 -20.95198 -19.66622 -17.30885 -16.93183 -16.59029 -16.11131 -15.74229 -15.11577 -14.50656 -14.29149 -13.82679 -13.46269 -12.97619 -12.65716 -12.48884 -12.05551 -11.68950 -11.50789 -11.00278 -10.80459 -10.72219 -10.69139 -10.50682 -10.23975 -9.95730 -8.99721 -8.70907 -8.57931 -8.33647 -6.02618 -4.05584 1.96029 3.25593 3.38352 3.40196 3.45979 3.58979 3.69957 4.06308 4.24493 4.47646 4.48558 4.62187 5.14793 5.24161 5.31051 5.48814 5.57843 6.16482 6.52128 6.57739 6.78731 6.82450 6.90831 7.44578 7.55900 7.73261 7.94389 8.08994 8.37347 9.02901 9.14294 9.59782 11.05112 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.050813 B = 0.006644 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.909449 B = 4213.301726 C = 4489.279859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.032 3.968 3 H 0.054 0.946 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.533 6.533 14 N -0.731 5.731 15 C 0.087 3.913 16 H 0.130 0.870 17 C -0.162 4.162 18 C 0.056 3.944 19 O -0.359 6.359 20 C 0.466 3.534 21 O -0.421 6.421 22 H 0.012 0.988 23 H 0.032 0.968 24 H 0.094 0.906 25 H 0.261 0.739 26 H 0.401 0.599 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.047 0.280 -15.832 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 H 0.072 0.928 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.314 3.686 13 O -0.407 6.407 14 N -0.388 5.388 15 C -0.021 4.021 16 H 0.147 0.853 17 C -0.200 4.200 18 C -0.019 4.019 19 O -0.277 6.277 20 C 0.302 3.698 21 O -0.299 6.299 22 H 0.031 0.969 23 H 0.051 0.949 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.236 0.764 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.966 -0.209 -15.342 15.628 hybrid contribution -0.089 -0.034 0.697 0.703 sum -3.055 -0.242 -14.645 14.963 Atomic orbital electron populations 1.21753 0.96408 0.99871 1.00991 1.18880 0.94170 0.96932 0.88946 0.92792 1.21103 1.31052 1.12887 0.88952 0.90785 1.24944 0.95078 0.95074 0.99122 1.69862 1.37084 1.23087 1.23672 0.86483 0.79370 0.79653 0.81513 1.20139 1.21358 1.20191 1.22140 0.78069 0.84230 0.84185 1.90548 1.37000 1.26851 1.86331 1.46243 1.55474 1.32755 1.04368 1.22042 0.91316 1.01298 0.87480 0.85290 1.23107 0.98503 1.03571 0.94814 1.24010 0.77582 1.00906 0.99383 1.87299 1.32563 1.84361 1.23454 1.23997 0.89815 0.74957 0.81027 1.90746 1.42067 1.42720 1.54390 0.96944 0.94899 0.88727 0.92893 0.76404 0.88096 0.88085 0.87096 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 2 C 0.03 0.79 2.64 -92.92 -0.25 0.55 16 3 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 12.01 7.15 -10.98 -0.08 11.93 16 13 O -0.53 -14.16 15.11 5.55 0.08 -14.08 16 14 N -0.73 -12.31 4.99 -53.78 -0.27 -12.58 16 15 C 0.09 1.23 3.39 -67.91 -0.23 1.00 16 16 H 0.13 1.97 7.56 -51.93 -0.39 1.58 16 17 C -0.16 -1.29 6.93 -25.24 -0.18 -1.47 16 18 C 0.06 0.42 7.84 37.88 0.30 0.72 16 19 O -0.36 -4.76 11.17 -39.73 -0.44 -5.20 16 20 C 0.47 7.76 8.15 36.40 0.30 8.06 16 21 O -0.42 -9.12 17.98 -18.32 -0.33 -9.45 16 22 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.40 5.53 7.80 -40.82 -0.32 5.21 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.65 7.70 -51.93 -0.40 0.25 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 262.53 15.07 3.96 3.96 Total: -1.00 -34.97 262.53 -5.01 -39.98 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.42 Total: -0.05 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.19 Total: 5.00 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.36 Total: -37.25 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.69 Total: -28.73 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -34.97 -5.01 -39.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261878880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.572 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds