Wall clock time and date at job start Mon Mar 30 2020 03:31:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09009 * 109.47102 * 2 1
4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3
5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1
6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1
7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.46807 * 60.00091 * 8 6 4
10 10 H 1.48498 * 109.47276 * 180.02562 * 8 6 4
11 11 H 1.48500 * 109.47057 * 299.99983 * 8 6 4
12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3
13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1
14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1
15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2
16 16 H 1.09007 * 110.36693 * 32.66679 * 15 14 12
17 17 C 1.54479 * 110.40399 * 154.99675 * 15 14 12
18 18 C 1.54370 * 103.04324 * 119.16189 * 17 15 14
19 19 O 1.45942 * 105.06970 * 17.81810 * 18 17 15
20 20 C 1.34562 * 108.40607 * 327.55867 * 19 18 17
21 21 O 1.20829 * 125.94730 * 213.35515 * 20 19 18
22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3
23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3
24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3
25 25 H 0.97006 * 119.99301 * 180.02562 * 7 6 4
26 26 H 0.97000 * 119.99894 * 359.71837 * 14 12 2
27 27 H 1.08994 * 110.69991 * 237.55034 * 17 15 14
28 28 H 1.09002 * 110.69730 * 0.76900 * 17 15 14
29 29 H 1.08998 * 110.32412 * 136.72054 * 18 17 15
30 30 H 1.09003 * 110.31967 * 258.92139 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2306
5 1 2.6532 -1.5884 1.1316
6 6 1.6992 -0.2392 2.4828
7 7 0.9426 0.8299 2.6033
8 14 2.3213 -1.1200 4.0081
9 1 3.8063 -1.1205 4.0083
10 1 1.8258 -0.4202 5.2205
11 1 1.8257 -2.5199 4.0080
12 6 2.0324 -0.7105 -1.2304
13 8 2.7297 -1.6966 -1.1189
14 7 1.7114 -0.2468 -2.4545
15 6 2.2048 -0.9340 -3.6505
16 1 2.2861 -2.0053 -3.4661
17 6 1.2708 -0.6636 -4.8509
18 6 2.1992 0.0412 -5.8629
19 8 3.5533 -0.2670 -5.4141
20 6 3.5442 -0.3649 -4.0721
21 8 4.4468 -0.0529 -3.3320
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3634 0.5139 0.8899
25 1 0.7086 1.1615 3.4843
26 1 1.1537 0.5418 -2.5435
27 1 0.8917 -1.5990 -5.2624
28 1 0.4496 -0.0085 -4.5601
29 1 2.0340 -0.3522 -6.8659
30 1 2.0304 1.1180 -5.8452
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001261878880.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:15
Heat of formation + Delta-G solvation = -118.550814 kcal
Electronic energy + Delta-G solvation = -15899.879370 eV
Core-core repulsion = 13081.503225 eV
Total energy + Delta-G solvation = -2818.376145 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.03654 -38.61864 -37.34383 -34.61634 -33.74994 -31.46191 -30.18051 -27.33484
-25.14068 -22.93699 -22.48273 -20.95198 -19.66622 -17.30885 -16.93183 -16.59029
-16.11131 -15.74229 -15.11577 -14.50656 -14.29149 -13.82679 -13.46269 -12.97619
-12.65716 -12.48884 -12.05551 -11.68950 -11.50789 -11.00278 -10.80459 -10.72219
-10.69139 -10.50682 -10.23975 -9.95730 -8.99721 -8.70907 -8.57931 -8.33647
-6.02618 -4.05584 1.96029 3.25593 3.38352 3.40196 3.45979 3.58979
3.69957 4.06308 4.24493 4.47646 4.48558 4.62187 5.14793 5.24161
5.31051 5.48814 5.57843 6.16482 6.52128 6.57739 6.78731 6.82450
6.90831 7.44578 7.55900 7.73261 7.94389 8.08994 8.37347 9.02901
9.14294 9.59782 11.05112
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.050813 B = 0.006644 C = 0.006236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 550.909449 B = 4213.301726 C = 4489.279859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.032 3.968
3 H 0.054 0.946
4 C -0.502 4.502
5 H 0.074 0.926
6 C 0.058 3.942
7 N -0.898 5.898
8 Si 0.902 3.098
9 H -0.276 1.276
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.524 3.476
13 O -0.533 6.533
14 N -0.731 5.731
15 C 0.087 3.913
16 H 0.130 0.870
17 C -0.162 4.162
18 C 0.056 3.944
19 O -0.359 6.359
20 C 0.466 3.534
21 O -0.421 6.421
22 H 0.012 0.988
23 H 0.032 0.968
24 H 0.094 0.906
25 H 0.261 0.739
26 H 0.401 0.599
27 H 0.100 0.900
28 H 0.101 0.899
29 H 0.111 0.889
30 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.047 0.280 -15.832 16.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.011 3.989
3 H 0.072 0.928
4 C -0.540 4.540
5 H 0.092 0.908
6 C -0.142 4.142
7 N -0.537 5.537
8 Si 0.730 3.270
9 H -0.201 1.201
10 H -0.214 1.214
11 H -0.202 1.202
12 C 0.314 3.686
13 O -0.407 6.407
14 N -0.388 5.388
15 C -0.021 4.021
16 H 0.147 0.853
17 C -0.200 4.200
18 C -0.019 4.019
19 O -0.277 6.277
20 C 0.302 3.698
21 O -0.299 6.299
22 H 0.031 0.969
23 H 0.051 0.949
24 H 0.113 0.887
25 H 0.071 0.929
26 H 0.236 0.764
27 H 0.119 0.881
28 H 0.119 0.881
29 H 0.129 0.871
30 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.966 -0.209 -15.342 15.628
hybrid contribution -0.089 -0.034 0.697 0.703
sum -3.055 -0.242 -14.645 14.963
Atomic orbital electron populations
1.21753 0.96408 0.99871 1.00991 1.18880 0.94170 0.96932 0.88946
0.92792 1.21103 1.31052 1.12887 0.88952 0.90785 1.24944 0.95078
0.95074 0.99122 1.69862 1.37084 1.23087 1.23672 0.86483 0.79370
0.79653 0.81513 1.20139 1.21358 1.20191 1.22140 0.78069 0.84230
0.84185 1.90548 1.37000 1.26851 1.86331 1.46243 1.55474 1.32755
1.04368 1.22042 0.91316 1.01298 0.87480 0.85290 1.23107 0.98503
1.03571 0.94814 1.24010 0.77582 1.00906 0.99383 1.87299 1.32563
1.84361 1.23454 1.23997 0.89815 0.74957 0.81027 1.90746 1.42067
1.42720 1.54390 0.96944 0.94899 0.88727 0.92893 0.76404 0.88096
0.88085 0.87096 0.89807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16
2 C 0.03 0.79 2.64 -92.92 -0.25 0.55 16
3 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16
4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16
5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16
6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16
7 N -0.90 -25.30 11.32 55.43 0.63 -24.67 16
8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16
9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
12 C 0.52 12.01 7.15 -10.98 -0.08 11.93 16
13 O -0.53 -14.16 15.11 5.55 0.08 -14.08 16
14 N -0.73 -12.31 4.99 -53.78 -0.27 -12.58 16
15 C 0.09 1.23 3.39 -67.91 -0.23 1.00 16
16 H 0.13 1.97 7.56 -51.93 -0.39 1.58 16
17 C -0.16 -1.29 6.93 -25.24 -0.18 -1.47 16
18 C 0.06 0.42 7.84 37.88 0.30 0.72 16
19 O -0.36 -4.76 11.17 -39.73 -0.44 -5.20 16
20 C 0.47 7.76 8.15 36.40 0.30 8.06 16
21 O -0.42 -9.12 17.98 -18.32 -0.33 -9.45 16
22 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16
23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16
25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16
26 H 0.40 5.53 7.80 -40.82 -0.32 5.21 16
27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.10 0.65 7.70 -51.93 -0.40 0.25 16
29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
LS Contribution 262.53 15.07 3.96 3.96
Total: -1.00 -34.97 262.53 -5.01 -39.98
By element:
Atomic # 1 Polarization: 3.37 SS G_CDS: -3.42 Total: -0.05 kcal
Atomic # 6 Polarization: 5.18 SS G_CDS: -0.19 Total: 5.00 kcal
Atomic # 7 Polarization: -37.61 SS G_CDS: 0.36 Total: -37.25 kcal
Atomic # 8 Polarization: -28.04 SS G_CDS: -0.69 Total: -28.73 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -34.97 -5.01 -39.98 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261878880.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.572 kcal
(2) G-P(sol) polarization free energy of solvation -34.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.546 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds