Wall clock time and date at job start Mon Mar 30 2020 03:31:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09009 * 109.47102 * 2 1
4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3
5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1
6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1
7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.46807 * 60.00091 * 8 6 4
10 10 H 1.48498 * 109.47276 * 180.02562 * 8 6 4
11 11 H 1.48500 * 109.47057 * 299.99983 * 8 6 4
12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3
13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1
14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1
15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2
16 16 H 1.09007 * 110.36693 * 32.66679 * 15 14 12
17 17 C 1.54479 * 110.40399 * 154.99675 * 15 14 12
18 18 C 1.54370 * 103.04324 * 119.16189 * 17 15 14
19 19 O 1.45942 * 105.06970 * 17.81810 * 18 17 15
20 20 C 1.34562 * 108.40607 * 327.55867 * 19 18 17
21 21 O 1.20829 * 125.94730 * 213.35515 * 20 19 18
22 22 H 1.09004 * 109.46762 * 60.00268 * 1 2 3
23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3
24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3
25 25 H 0.97006 * 119.99301 * 180.02562 * 7 6 4
26 26 H 0.97000 * 119.99894 * 359.71837 * 14 12 2
27 27 H 1.08994 * 110.69991 * 237.55034 * 17 15 14
28 28 H 1.09002 * 110.69730 * 0.76900 * 17 15 14
29 29 H 1.08998 * 110.32412 * 136.72054 * 18 17 15
30 30 H 1.09003 * 110.31967 * 258.92139 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2306
5 1 2.6532 -1.5884 1.1316
6 6 1.6992 -0.2392 2.4828
7 7 0.9426 0.8299 2.6033
8 14 2.3213 -1.1200 4.0081
9 1 3.8063 -1.1205 4.0083
10 1 1.8258 -0.4202 5.2205
11 1 1.8257 -2.5199 4.0080
12 6 2.0324 -0.7105 -1.2304
13 8 2.7297 -1.6966 -1.1189
14 7 1.7114 -0.2468 -2.4545
15 6 2.2048 -0.9340 -3.6505
16 1 2.2861 -2.0053 -3.4661
17 6 1.2708 -0.6636 -4.8509
18 6 2.1992 0.0412 -5.8629
19 8 3.5533 -0.2670 -5.4141
20 6 3.5442 -0.3649 -4.0721
21 8 4.4468 -0.0529 -3.3320
22 1 -0.3633 0.5138 -0.8901
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3634 0.5139 0.8899
25 1 0.7086 1.1615 3.4843
26 1 1.1537 0.5418 -2.5435
27 1 0.8917 -1.5990 -5.2624
28 1 0.4496 -0.0085 -4.5601
29 1 2.0340 -0.3522 -6.8659
30 1 2.0304 1.1180 -5.8452
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001261878880.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:15
Heat of formation + Delta-G solvation = -144.997245 kcal
Electronic energy + Delta-G solvation = -15901.026173 eV
Core-core repulsion = 13081.503225 eV
Total energy + Delta-G solvation = -2819.522948 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-42.19804 -40.32014 -38.66023 -36.04482 -35.77482 -32.98585 -31.71697 -28.45576
-27.19128 -24.64911 -23.38077 -22.24499 -21.34116 -18.68830 -18.26447 -17.95107
-17.89371 -17.28091 -16.62470 -16.27896 -15.48000 -15.31627 -14.86918 -14.59697
-14.36069 -13.62640 -13.49299 -12.98312 -12.85190 -12.73619 -12.64047 -12.55502
-12.22465 -12.01786 -11.90470 -11.48669 -11.06480 -10.64613 -10.37488 -10.05760
-8.16651 -6.26903 0.71292 1.39883 1.41741 1.50276 1.78734 2.18581
2.36313 2.49284 3.02631 3.13180 3.30735 3.78927 3.99089 4.23598
4.45881 4.69226 4.75566 4.85014 4.94555 4.97430 5.02589 5.31907
5.49252 5.63482 5.74072 5.93726 6.20227 6.29513 6.63712 6.81639
7.36491 7.46796 8.88938
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.050813 B = 0.006644 C = 0.006236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 550.909449 B = 4213.301726 C = 4489.279859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.025 3.975
3 H 0.038 0.962
4 C -0.534 4.534
5 H 0.046 0.954
6 C 0.021 3.979
7 N -0.909 5.909
8 Si 0.955 3.045
9 H -0.281 1.281
10 H -0.272 1.272
11 H -0.274 1.274
12 C 0.524 3.476
13 O -0.580 6.580
14 N -0.710 5.710
15 C 0.080 3.920
16 H 0.117 0.883
17 C -0.142 4.142
18 C 0.049 3.951
19 O -0.367 6.367
20 C 0.468 3.532
21 O -0.488 6.488
22 H 0.059 0.941
23 H 0.027 0.973
24 H 0.070 0.930
25 H 0.266 0.734
26 H 0.418 0.582
27 H 0.130 0.870
28 H 0.127 0.873
29 H 0.151 0.849
30 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.904 0.622 -17.743 18.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.003 3.997
3 H 0.056 0.944
4 C -0.572 4.572
5 H 0.064 0.936
6 C -0.179 4.179
7 N -0.548 5.548
8 Si 0.780 3.220
9 H -0.207 1.207
10 H -0.196 1.196
11 H -0.199 1.199
12 C 0.314 3.686
13 O -0.458 6.458
14 N -0.366 5.366
15 C -0.027 4.027
16 H 0.135 0.865
17 C -0.180 4.180
18 C -0.024 4.024
19 O -0.285 6.285
20 C 0.307 3.693
21 O -0.371 6.371
22 H 0.078 0.922
23 H 0.046 0.954
24 H 0.089 0.911
25 H 0.075 0.925
26 H 0.257 0.743
27 H 0.149 0.851
28 H 0.145 0.855
29 H 0.169 0.831
30 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -4.889 0.174 -17.328 18.005
hybrid contribution 0.466 -0.109 1.150 1.246
sum -4.422 0.065 -16.178 16.772
Atomic orbital electron populations
1.21552 0.94151 0.99797 1.02099 1.18822 0.95991 0.95637 0.89202
0.94408 1.21268 1.31762 1.12846 0.91319 0.93607 1.25575 0.95160
0.95774 1.01342 1.69935 1.37043 1.23426 1.24429 0.85667 0.78459
0.78918 0.78928 1.20676 1.19618 1.19900 1.21692 0.77664 0.83573
0.85664 1.90522 1.39068 1.28889 1.87300 1.45840 1.54338 1.32850
1.03614 1.22353 0.91965 1.00032 0.88391 0.86533 1.23207 0.97644
1.05805 0.91313 1.24582 0.74351 1.02566 1.00873 1.87278 1.36352
1.83626 1.21244 1.24397 0.89540 0.73455 0.81948 1.90711 1.44264
1.45749 1.56412 0.92189 0.95417 0.91146 0.92506 0.74333 0.85124
0.85452 0.83087 0.87831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.16 8.87 71.98 0.64 -4.52 16
2 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16
3 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16
4 C -0.53 -31.67 8.37 25.60 0.21 -31.46 16
5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16
6 C 0.02 1.18 5.30 84.65 0.45 1.63 16
7 N -0.91 -51.38 11.32 21.45 0.24 -51.14 16
8 Si 0.95 45.82 29.54 68.60 2.03 47.85 16
9 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16
10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16
12 C 0.52 24.39 7.15 87.66 0.63 25.02 16
13 O -0.58 -31.96 15.11 -3.04 -0.05 -32.01 16
14 N -0.71 -22.96 4.99 -442.46 -2.21 -25.17 16
15 C 0.08 2.14 3.39 45.01 0.15 2.29 16
16 H 0.12 3.49 7.56 -2.38 -0.02 3.47 16
17 C -0.14 -1.58 6.93 31.56 0.22 -1.37 16
18 C 0.05 0.51 7.84 72.45 0.57 1.08 16
19 O -0.37 -8.98 11.17 -55.07 -0.61 -9.60 16
20 C 0.47 15.41 8.15 71.49 0.58 15.99 16
21 O -0.49 -21.96 17.98 21.54 0.39 -21.58 16
22 H 0.06 1.99 7.57 -2.38 -0.02 1.97 16
23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16
24 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16
25 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16
26 H 0.42 10.38 7.80 -92.71 -0.72 9.65 16
27 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16
28 H 0.13 0.85 7.70 -2.39 -0.02 0.84 16
29 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16
30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16
Total: -1.00 -81.20 262.53 3.64 -77.56
By element:
Atomic # 1 Polarization: 3.76 SS G_CDS: 0.44 Total: 4.20 kcal
Atomic # 6 Polarization: 6.46 SS G_CDS: 3.42 Total: 9.88 kcal
Atomic # 7 Polarization: -74.34 SS G_CDS: -1.97 Total: -76.31 kcal
Atomic # 8 Polarization: -62.90 SS G_CDS: -0.27 Total: -63.18 kcal
Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal
Total: -81.20 3.64 -77.56 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261878880.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -67.440 kcal
(2) G-P(sol) polarization free energy of solvation -81.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.997 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds