Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.43338 * 328.90724 * 15 14 12 17 17 C 1.54630 * 110.48389 * 206.22760 * 15 14 12 18 18 C 1.54481 * 101.76389 * 266.11574 * 17 15 14 19 19 N 1.46759 * 105.47477 * 334.58938 * 18 17 15 20 20 C 1.34419 * 111.29979 * 17.01198 * 19 18 17 21 21 O 1.21285 * 124.94082 * 179.56370 * 20 19 18 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09007 * 110.97194 * 24.23308 * 17 15 14 27 27 H 1.09000 * 110.97260 * 148.00189 * 17 15 14 28 28 H 1.08997 * 110.25084 * 215.58307 * 18 17 15 29 29 H 1.09003 * 110.31666 * 93.62567 * 18 17 15 30 30 H 0.97003 * 124.34954 * 196.99470 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 1 3.1898 -1.4351 -3.3470 17 6 2.3541 -0.0572 -4.8194 18 6 1.0083 -0.2997 -5.5380 19 7 0.5785 -1.6400 -5.1227 20 6 1.2425 -2.0482 -4.0275 21 8 1.0764 -3.1130 -3.4710 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7089 1.1611 3.4845 26 1 2.4507 0.9845 -4.5131 27 1 3.1920 -0.3563 -5.4491 28 1 1.1462 -0.2657 -6.6187 29 1 0.2745 0.4446 -5.2284 30 1 -0.0980 -2.1640 -5.5795 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333246020.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -148.848496 kcal Electronic energy + Delta-G solvation = -15981.008688 eV Core-core repulsion = 13161.318737 eV Total energy + Delta-G solvation = -2819.689951 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.03940 -40.56830 -37.86302 -36.95726 -35.96857 -32.80523 -31.67061 -28.38748 -27.32047 -25.21917 -22.92404 -22.27652 -21.36265 -18.82757 -18.62488 -18.20553 -17.70184 -17.08101 -16.47148 -16.06412 -15.82170 -14.98701 -14.85226 -14.66072 -14.24812 -13.71436 -13.58334 -13.04272 -12.90176 -12.72773 -12.65700 -12.54282 -12.32456 -12.19118 -12.07443 -11.15751 -11.09207 -10.88799 -10.55978 -10.16991 -8.22980 -6.35915 0.97944 1.37672 1.40753 1.41884 1.53322 2.02453 2.30652 2.44054 3.06973 3.21644 3.40726 3.82587 4.08076 4.16172 4.50211 4.63633 4.75890 4.84205 4.90499 4.95118 5.07285 5.31876 5.40655 5.65186 5.69985 5.83480 5.87702 6.06775 6.69776 6.96239 7.06723 7.32717 8.83662 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049745 B = 0.006818 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.737326 B = 4105.882177 C = 4262.667255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.269 1.269 12 C 0.466 3.534 13 O -0.534 6.534 14 O -0.336 6.336 15 C 0.033 3.967 16 H 0.096 0.904 17 C -0.116 4.116 18 C 0.099 3.901 19 N -0.706 5.706 20 C 0.493 3.507 21 O -0.574 6.574 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.018 0.982 25 H 0.270 0.730 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 3.550 -17.410 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.035 3.965 3 H 0.079 0.921 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.193 1.193 12 C 0.311 3.689 13 O -0.422 6.422 14 O -0.253 6.253 15 C -0.026 4.026 16 H 0.114 0.886 17 C -0.153 4.153 18 C -0.024 4.024 19 N -0.363 5.363 20 C 0.277 3.723 21 O -0.453 6.453 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.107 0.893 30 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.278 2.916 -16.940 17.192 hybrid contribution 0.065 -1.067 0.851 1.367 sum -0.213 1.849 -16.089 16.196 Atomic orbital electron populations 1.21567 0.94547 0.99369 1.02279 1.18698 0.95683 0.96456 0.85628 0.92062 1.21256 1.32876 1.13302 0.90714 0.92999 1.25609 0.94832 0.95634 1.01427 1.69937 1.36482 1.23195 1.24873 0.85484 0.78651 0.78503 0.78605 1.20039 1.20168 1.19319 1.25110 0.76126 0.82710 0.84981 1.90514 1.37343 1.27374 1.86938 1.86691 1.70251 1.53901 1.14421 1.23657 0.97295 0.94239 0.87421 0.88648 1.22945 0.99739 1.01461 0.91164 1.22495 0.95577 0.82010 1.02268 1.46149 1.40928 1.20568 1.28656 1.21433 0.82822 0.86802 0.81206 1.90757 1.68610 1.26603 1.59354 0.89921 0.92996 0.96318 0.92086 0.85984 0.85207 0.85125 0.89276 0.73729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.90 71.98 0.64 -5.26 16 2 C 0.05 2.88 2.74 -12.29 -0.03 2.85 16 3 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 4 C -0.54 -32.16 8.37 25.60 0.21 -31.94 16 5 H 0.05 3.27 6.76 -2.91 -0.02 3.25 16 6 C 0.03 1.42 5.30 84.66 0.45 1.87 16 7 N -0.91 -50.83 11.32 21.45 0.24 -50.59 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.47 23.25 7.24 71.24 0.52 23.77 16 13 O -0.53 -29.94 14.72 21.98 0.32 -29.62 16 14 O -0.34 -13.28 9.85 -51.39 -0.51 -13.79 16 15 C 0.03 1.04 3.22 30.59 0.10 1.14 16 16 H 0.10 3.35 7.26 -2.39 -0.02 3.33 16 17 C -0.12 -1.83 6.92 31.65 0.22 -1.61 16 18 C 0.10 1.20 7.78 86.83 0.68 1.88 16 19 N -0.71 -14.84 6.24 -459.82 -2.87 -17.71 16 20 C 0.49 16.90 8.12 87.90 0.71 17.62 16 21 O -0.57 -26.53 18.03 -3.04 -0.05 -26.58 16 22 H 0.08 4.31 6.07 -2.39 -0.01 4.30 16 23 H 0.05 2.18 8.11 -2.38 -0.02 2.16 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.12 1.64 8.11 -2.38 -0.02 1.62 16 27 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.42 7.06 8.96 -92.71 -0.83 6.23 16 Total: -1.00 -78.14 263.91 2.99 -75.15 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.33 Total: 5.72 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 3.49 Total: 10.31 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.63 Total: -68.30 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -0.24 Total: -69.99 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.14 2.99 -75.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333246020.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.695 kcal (2) G-P(sol) polarization free energy of solvation -78.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds