Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32997 * 1 3 3 C 1.50702 * 119.99708 * 2 1 4 4 O 1.42906 * 109.47201 * 0.02562 * 3 2 1 5 5 C 1.47093 * 120.00239 * 180.02562 * 2 1 3 6 6 O 1.21619 * 120.00098 * 0.02562 * 5 2 1 7 7 N 1.34771 * 120.00128 * 179.97438 * 5 2 1 8 8 C 1.47584 * 134.49657 * 179.97438 * 7 5 2 9 9 C 1.53946 * 86.12025 * 155.36378 * 8 7 5 10 10 O 1.42897 * 113.74068 * 269.15867 * 9 8 7 11 11 C 1.50700 * 113.74246 * 137.95222 * 9 8 7 12 12 H 1.07998 * 119.99659 * 4.91778 * 11 9 8 13 13 C 1.37874 * 119.99713 * 184.91336 * 11 9 8 14 14 N 1.31513 * 120.00264 * 13.84013 * 13 11 9 15 15 Si 1.86803 * 119.99682 * 193.83482 * 13 11 9 16 16 H 1.48503 * 109.47299 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47226 * 300.00160 * 15 13 11 18 18 H 1.48501 * 109.47311 * 60.00081 * 15 13 11 19 19 C 1.47585 * 134.49296 * 0.02562 * 7 5 2 20 20 H 1.08003 * 120.00496 * 359.97438 * 1 2 3 21 21 H 1.08006 * 119.99794 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46883 * 119.99809 * 3 2 1 23 23 H 1.08996 * 109.47332 * 240.00663 * 3 2 1 24 24 H 0.96693 * 114.00121 * 180.02562 * 4 3 2 25 25 H 1.09003 * 113.76727 * 41.05948 * 8 7 5 26 26 H 1.09000 * 113.86995 * 269.68290 * 8 7 5 27 27 H 0.96698 * 114.00098 * 171.44601 * 10 9 8 28 28 H 0.96998 * 119.99692 * 5.87327 * 14 13 11 29 29 H 1.08988 * 113.77205 * 90.32954 * 19 7 5 30 30 H 1.09001 * 113.76441 * 318.93233 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0834 1.3052 0.0000 4 8 1.1547 2.3913 0.0006 5 6 2.0655 -1.2738 -0.0006 6 8 1.4575 -2.3271 -0.0015 7 7 3.4132 -1.2738 -0.0011 8 6 4.4476 -2.3265 -0.0013 9 6 5.3702 -1.2738 -0.6421 10 8 5.3399 -1.2757 -2.0708 11 6 6.7700 -1.2736 -0.0841 12 1 7.0644 -2.0230 0.6358 13 6 7.6748 -0.3169 -0.4927 14 7 7.2584 0.7453 -1.1468 15 14 9.4923 -0.5294 -0.1170 16 1 10.2485 0.6283 -0.6585 17 1 9.6885 -0.6042 1.3531 18 1 9.9849 -1.7811 -0.7463 19 6 4.4475 -0.2210 -0.0008 20 1 -0.5401 0.9353 0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 2.7100 1.3629 0.8900 23 1 2.7100 1.3630 -0.8900 24 1 1.5705 3.2643 0.0002 25 1 4.2187 -3.1672 -0.6562 26 1 4.7611 -2.6370 0.9954 27 1 5.8133 -0.5359 -2.4752 28 1 6.3083 0.8988 -1.2676 29 1 4.7599 0.0877 0.9967 30 1 4.2185 0.6199 -0.6555 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616732959.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -101.124197 kcal Electronic energy + Delta-G solvation = -16112.234388 eV Core-core repulsion = 13294.613918 eV Total energy + Delta-G solvation = -2817.620470 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.58548 -39.49992 -38.11138 -36.19095 -34.34900 -34.16288 -30.47126 -28.05963 -27.07783 -26.46338 -23.60985 -21.40348 -20.18819 -19.39910 -18.41956 -17.89927 -17.06645 -16.85146 -16.47352 -15.85947 -15.69173 -15.48762 -15.28820 -14.53633 -14.41368 -13.98390 -13.61427 -13.17307 -12.99625 -12.63767 -12.44668 -12.31157 -11.90126 -11.57050 -11.35029 -11.14852 -10.73894 -10.44847 -10.20144 -9.67190 -8.68171 -6.48685 0.29516 1.61868 1.65454 1.77338 1.87183 2.07779 2.55842 2.89079 2.98247 3.38568 3.62456 3.83560 3.93441 4.19309 4.29795 4.33762 4.43466 4.53965 4.64717 4.68122 4.76793 4.94042 5.22061 5.37709 5.72897 6.08816 6.45679 6.62361 6.78522 6.90864 6.95357 7.26614 8.65173 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037552 B = 0.007928 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.455912 B = 3530.798233 C = 4003.174701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.208 4.208 3 C 0.124 3.876 4 O -0.576 6.576 5 C 0.563 3.437 6 O -0.596 6.596 7 N -0.630 5.630 8 C 0.119 3.881 9 C 0.198 3.802 10 O -0.576 6.576 11 C -0.633 4.633 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.913 5.913 15 Si 1.109 2.891 16 H -0.283 1.283 17 H -0.270 1.270 18 H -0.279 1.279 19 C 0.081 3.919 20 H 0.148 0.852 21 H 0.109 0.891 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.405 0.595 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.375 0.625 28 H 0.265 0.735 29 H 0.094 0.906 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 4.908 3.084 8.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.211 4.211 3 C 0.047 3.953 4 O -0.385 6.385 5 C 0.356 3.644 6 O -0.480 6.480 7 N -0.362 5.362 8 C -0.003 4.003 9 C 0.157 3.843 10 O -0.384 6.384 11 C -0.671 4.671 12 H 0.080 0.920 13 C -0.200 4.200 14 N -0.550 5.550 15 Si 0.931 3.069 16 H -0.209 1.209 17 H -0.195 1.195 18 H -0.205 1.205 19 C -0.041 4.041 20 H 0.166 0.834 21 H 0.127 0.873 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.257 0.743 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.224 0.776 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.365 4.020 2.928 7.315 hybrid contribution -0.811 0.006 0.095 0.816 sum -6.175 4.026 3.023 7.968 Atomic orbital electron populations 1.24737 0.93903 1.04089 0.87203 1.21469 0.96599 0.92513 1.10541 1.20927 0.89832 0.83936 1.00601 1.86285 1.36526 1.17965 1.97752 1.18507 0.80478 0.89733 0.75706 1.90701 1.68127 1.34452 1.54711 1.50109 1.03312 1.12214 1.70572 1.23337 0.83545 0.92831 1.00610 1.20347 0.93061 0.91880 0.78993 1.86250 1.78137 1.53161 1.20861 1.22444 0.97408 1.17484 1.29774 0.92030 1.27045 1.09495 0.91361 0.92145 1.71015 1.17819 1.26437 1.39729 0.83007 0.70455 0.76237 0.77153 1.20852 1.19517 1.20528 1.24491 0.84340 0.93473 1.01839 0.83431 0.87298 0.91725 0.92275 0.74330 0.91933 0.87845 0.77610 0.92326 0.88764 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 13.66 66.65 0.91 -0.81 16 2 C -0.21 -6.89 6.00 -18.71 -0.11 -7.00 16 3 C 0.12 3.42 5.65 71.24 0.40 3.82 16 4 O -0.58 -12.73 12.08 -148.98 -1.80 -14.53 16 5 C 0.56 23.36 7.98 86.57 0.69 24.05 16 6 O -0.60 -28.19 16.95 -4.09 -0.07 -28.26 16 7 N -0.63 -26.22 3.61 -844.39 -3.05 -29.26 16 8 C 0.12 5.18 8.23 86.48 0.71 5.89 16 9 C 0.20 9.13 1.08 -10.87 -0.01 9.12 16 10 O -0.58 -28.14 13.45 -148.98 -2.00 -30.14 16 11 C -0.63 -31.18 8.56 25.60 0.22 -30.96 16 12 H 0.06 3.01 7.85 -2.91 -0.02 2.99 16 13 C 0.00 0.08 5.26 84.65 0.45 0.52 16 14 N -0.91 -45.89 12.80 21.45 0.27 -45.62 16 15 Si 1.11 43.94 29.93 68.60 2.05 45.99 16 16 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 19 C 0.08 3.22 5.18 86.49 0.45 3.67 16 20 H 0.15 3.41 6.89 -2.91 -0.02 3.39 16 21 H 0.11 3.13 7.49 -2.91 -0.02 3.11 16 22 H 0.06 1.73 7.33 -2.39 -0.02 1.71 16 23 H 0.06 1.70 6.27 -2.39 -0.01 1.68 16 24 H 0.41 5.08 9.12 -74.06 -0.68 4.40 16 25 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.10 4.15 8.09 -2.39 -0.02 4.13 16 27 H 0.37 17.78 6.95 -74.06 -0.52 17.26 16 28 H 0.27 12.90 5.52 -92.71 -0.51 12.39 16 29 H 0.09 3.63 8.09 -2.39 -0.02 3.61 16 30 H 0.08 3.10 5.30 -2.39 -0.01 3.08 16 Total: -1.00 -62.29 258.78 -0.64 -62.93 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.25 Total: 30.59 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 3.70 Total: 8.29 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.77 Total: -74.88 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: -3.87 Total: -72.93 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.05 Total: 45.99 kcal Total: -62.29 -0.64 -62.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616732959.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.192 kcal (2) G-P(sol) polarization free energy of solvation -62.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds