Wall clock time and date at job start Mon Mar 30 2020 02:54:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 C 1.50701 * 109.67977 * 104.21345 * 3 2 1
5 5 H 1.08000 * 119.99960 * 119.56295 * 4 3 2
6 6 C 1.37875 * 120.00195 * 299.56091 * 4 3 2
7 7 N 1.31516 * 119.99727 * 6.79027 * 6 4 3
8 8 Si 1.86794 * 120.00188 * 186.79346 * 6 4 3
9 9 H 1.48494 * 109.47646 * 270.00194 * 8 6 4
10 10 H 1.48507 * 109.47222 * 30.00269 * 8 6 4
11 11 H 1.48502 * 109.46943 * 149.99765 * 8 6 4
12 12 C 1.53328 * 109.68548 * 343.69185 * 3 2 1
13 13 C 1.52735 * 108.39592 * 310.10496 * 12 3 2
14 14 C 1.50626 * 110.60160 * 308.95227 * 13 12 3
15 15 C 1.38916 * 117.75793 * 197.67401 * 14 13 12
16 16 C 1.37926 * 120.54665 * 180.25196 * 15 14 13
17 17 C 1.38258 * 119.77749 * 0.02932 * 16 15 14
18 18 C 1.37937 * 119.76708 * 359.86808 * 17 16 15
19 19 C 1.37667 * 122.56549 * 17.71505 * 14 13 12
20 20 C 1.50648 * 122.57716 * 359.32728 * 19 14 13
21 21 H 0.97005 * 120.00079 * 358.57862 * 7 6 4
22 22 H 1.08995 * 109.67663 * 69.83218 * 12 3 2
23 23 H 1.09000 * 109.67501 * 190.38447 * 12 3 2
24 24 H 1.08996 * 109.24804 * 69.24209 * 13 12 3
25 25 H 1.08998 * 109.24782 * 188.70049 * 13 12 3
26 26 H 1.08002 * 119.72072 * 0.23760 * 15 14 13
27 27 H 1.08004 * 120.10944 * 180.02562 * 16 15 14
28 28 H 1.07996 * 120.11827 * 179.89726 * 17 16 15
29 29 H 1.08000 * 119.72893 * 180.02562 * 18 17 16
30 30 H 1.09006 * 109.21112 * 257.49653 * 20 19 14
31 31 H 1.08991 * 109.29949 * 138.05695 * 20 19 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1154 0.3493 -1.3755
5 1 3.7313 1.2249 -1.5180
6 6 2.7933 -0.4495 -2.4521
7 7 1.9370 -1.4370 -2.3053
8 14 3.5729 -0.1294 -4.1191
9 1 2.7274 0.8194 -4.8872
10 1 4.9251 0.4545 -3.9293
11 1 3.6864 -1.4079 -4.8662
12 6 3.1251 -1.3847 0.4054
13 6 2.4086 -1.8112 1.6851
14 6 2.4961 -0.7276 2.7277
15 6 2.2385 -1.0772 4.0472
16 6 2.2973 -0.1296 5.0477
17 6 2.6146 1.1794 4.7359
18 6 2.8728 1.5282 3.4265
19 6 2.8169 0.5748 2.4178
20 6 3.1219 1.0226 1.0121
21 1 1.5479 -1.6162 -1.4350
22 1 2.9159 -2.1014 -0.3887
23 1 4.1993 -1.3375 0.5845
24 1 1.3608 -2.0104 1.4608
25 1 2.8724 -2.7189 2.0711
26 1 1.9898 -2.0994 4.2916
27 1 2.0961 -0.4093 6.0714
28 1 2.6605 1.9262 5.5147
29 1 3.1210 2.5508 3.1836
30 1 4.2003 1.1321 0.8966
31 1 2.6418 1.9836 0.8281
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075599393.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:07
Heat of formation + Delta-G solvation = 31.012962 kcal
Electronic energy + Delta-G solvation = -15293.968884 eV
Core-core repulsion = 12925.220326 eV
Total energy + Delta-G solvation = -2368.748559 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.101 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.81290 -37.02232 -34.11436 -32.80376 -32.14230 -29.48503 -28.59220 -24.83732
-23.02929 -22.26307 -21.76148 -19.75729 -17.71583 -16.04820 -15.68423 -14.73415
-14.35428 -14.11746 -13.82511 -13.54539 -13.06534 -12.71382 -12.51621 -12.18636
-11.85559 -11.55357 -11.30521 -11.12753 -10.88686 -10.87494 -10.72154 -10.45939
-10.26297 -10.17981 -9.55612 -8.70332 -8.56769 -8.43243 -8.14239 -6.55179
-4.39689 1.68634 1.71943 3.36622 3.37958 3.54217 4.06270 4.09187
4.15867 4.40767 5.03120 5.12565 5.16339 5.29007 5.33915 5.49713
5.68237 5.74263 5.80445 5.94608 6.05735 6.21401 6.29867 6.34975
6.43788 6.61376 6.69097 6.76728 6.79746 6.97119 7.14895 7.21404
7.36888 7.79838 8.14826 8.56038 8.96045 9.34703 10.77340
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.044273 B = 0.008264 C = 0.007935
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 632.282656 B = 3387.407662 C = 3528.037069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.509 5.509
2 C 0.249 3.751
3 C 0.145 3.855
4 C -0.597 4.597
5 H 0.069 0.931
6 C 0.027 3.973
7 N -0.892 5.892
8 Si 1.073 2.927
9 H -0.287 1.287
10 H -0.283 1.283
11 H -0.282 1.282
12 C -0.110 4.110
13 C -0.091 4.091
14 C -0.066 4.066
15 C -0.124 4.124
16 C -0.132 4.132
17 C -0.130 4.130
18 C -0.123 4.123
19 C -0.069 4.069
20 C -0.058 4.058
21 H 0.276 0.724
22 H 0.084 0.916
23 H 0.069 0.931
24 H 0.068 0.932
25 H 0.069 0.931
26 H 0.116 0.884
27 H 0.115 0.885
28 H 0.115 0.885
29 H 0.118 0.882
30 H 0.089 0.911
31 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.488 1.815 10.022 11.570
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.186 5.186
2 C -0.067 4.067
3 C 0.142 3.858
4 C -0.635 4.635
5 H 0.087 0.913
6 C -0.180 4.180
7 N -0.527 5.527
8 Si 0.900 3.100
9 H -0.213 1.213
10 H -0.209 1.209
11 H -0.207 1.207
12 C -0.149 4.149
13 C -0.128 4.128
14 C -0.066 4.066
15 C -0.142 4.142
16 C -0.150 4.150
17 C -0.148 4.148
18 C -0.141 4.141
19 C -0.069 4.069
20 C -0.096 4.096
21 H 0.090 0.910
22 H 0.103 0.897
23 H 0.088 0.912
24 H 0.087 0.913
25 H 0.087 0.913
26 H 0.134 0.866
27 H 0.133 0.867
28 H 0.133 0.867
29 H 0.136 0.864
30 H 0.107 0.893
31 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 3.782 1.274 8.461 9.355
hybrid contribution 0.205 0.560 1.662 1.766
sum 3.987 1.834 10.123 11.033
Atomic orbital electron populations
1.80909 1.14012 1.10820 1.12859 1.30390 0.95950 0.90876 0.89502
1.16136 0.79464 0.93590 0.96656 1.21772 1.36402 1.14655 0.90707
0.91270 1.25979 0.94649 0.93284 1.04079 1.70818 1.24686 1.29446
1.27778 0.83475 0.75768 0.76397 0.74350 1.21341 1.20881 1.20697
1.21775 0.99489 0.98367 0.95295 1.20662 1.01387 0.95751 0.94952
1.19760 0.98190 0.94413 0.94284 1.21140 1.01130 0.99326 0.92627
1.20938 1.01732 0.93606 0.98707 1.20956 1.01348 0.96240 0.96283
1.21161 1.01090 0.99142 0.92717 1.19974 0.97851 0.92721 0.96315
1.20489 1.01840 0.98729 0.88591 0.91003 0.89730 0.91208 0.91340
0.91284 0.86640 0.86717 0.86664 0.86381 0.89284 0.91174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -13.57 18.54 42.15 0.78 -12.79 16
2 C 0.25 6.27 9.40 -20.76 -0.20 6.07 16
3 C 0.15 3.31 0.46 -158.41 -0.07 3.23 16
4 C -0.60 -14.96 7.98 -34.44 -0.27 -15.23 16
5 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16
6 C 0.03 0.72 5.07 -17.82 -0.09 0.63 16
7 N -0.89 -25.28 12.60 55.43 0.70 -24.58 16
8 Si 1.07 23.33 29.91 -169.99 -5.08 18.25 16
9 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16
10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16
11 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16
12 C -0.11 -2.30 4.61 -26.70 -0.12 -2.43 16
13 C -0.09 -1.68 5.17 -28.06 -0.15 -1.82 16
14 C -0.07 -1.19 5.52 -104.62 -0.58 -1.77 16
15 C -0.12 -1.93 9.61 -39.44 -0.38 -2.31 16
16 C -0.13 -1.85 10.05 -39.69 -0.40 -2.25 16
17 C -0.13 -1.82 10.05 -39.68 -0.40 -2.22 16
18 C -0.12 -1.92 9.61 -39.44 -0.38 -2.30 16
19 C -0.07 -1.23 5.43 -104.61 -0.57 -1.80 16
20 C -0.06 -1.12 4.35 -28.04 -0.12 -1.25 16
21 H 0.28 7.81 4.47 -40.82 -0.18 7.63 16
22 H 0.08 1.97 5.72 -51.93 -0.30 1.67 16
23 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16
24 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16
25 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16
26 H 0.12 1.56 8.05 -52.49 -0.42 1.14 16
27 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16
28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16
29 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16
30 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16
31 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16
LS Contribution 259.58 15.07 3.91 3.91
Total: -1.00 -29.38 259.58 -6.85 -36.24
By element:
Atomic # 1 Polarization: 5.86 SS G_CDS: -3.44 Total: 2.42 kcal
Atomic # 6 Polarization: -19.72 SS G_CDS: -3.73 Total: -23.45 kcal
Atomic # 7 Polarization: -38.85 SS G_CDS: 1.48 Total: -37.37 kcal
Atomic # 14 Polarization: 23.33 SS G_CDS: -5.08 Total: 18.25 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -29.38 -6.85 -36.24 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075599393.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.252 kcal
(2) G-P(sol) polarization free energy of solvation -29.385 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds