Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50701 * 109.67977 * 104.21345 * 3 2 1 5 5 H 1.08000 * 119.99960 * 119.56295 * 4 3 2 6 6 C 1.37875 * 120.00195 * 299.56091 * 4 3 2 7 7 N 1.31516 * 119.99727 * 6.79027 * 6 4 3 8 8 Si 1.86794 * 120.00188 * 186.79346 * 6 4 3 9 9 H 1.48494 * 109.47646 * 270.00194 * 8 6 4 10 10 H 1.48507 * 109.47222 * 30.00269 * 8 6 4 11 11 H 1.48502 * 109.46943 * 149.99765 * 8 6 4 12 12 C 1.53328 * 109.68548 * 343.69185 * 3 2 1 13 13 C 1.52735 * 108.39592 * 310.10496 * 12 3 2 14 14 C 1.50626 * 110.60160 * 308.95227 * 13 12 3 15 15 C 1.38916 * 117.75793 * 197.67401 * 14 13 12 16 16 C 1.37926 * 120.54665 * 180.25196 * 15 14 13 17 17 C 1.38258 * 119.77749 * 0.02932 * 16 15 14 18 18 C 1.37937 * 119.76708 * 359.86808 * 17 16 15 19 19 C 1.37667 * 122.56549 * 17.71505 * 14 13 12 20 20 C 1.50648 * 122.57716 * 359.32728 * 19 14 13 21 21 H 0.97005 * 120.00079 * 358.57862 * 7 6 4 22 22 H 1.08995 * 109.67663 * 69.83218 * 12 3 2 23 23 H 1.09000 * 109.67501 * 190.38447 * 12 3 2 24 24 H 1.08996 * 109.24804 * 69.24209 * 13 12 3 25 25 H 1.08998 * 109.24782 * 188.70049 * 13 12 3 26 26 H 1.08002 * 119.72072 * 0.23760 * 15 14 13 27 27 H 1.08004 * 120.10944 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.11827 * 179.89726 * 17 16 15 29 29 H 1.08000 * 119.72893 * 180.02562 * 18 17 16 30 30 H 1.09006 * 109.21112 * 257.49653 * 20 19 14 31 31 H 1.08991 * 109.29949 * 138.05695 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1154 0.3493 -1.3755 5 1 3.7313 1.2249 -1.5180 6 6 2.7933 -0.4495 -2.4521 7 7 1.9370 -1.4370 -2.3053 8 14 3.5729 -0.1294 -4.1191 9 1 2.7274 0.8194 -4.8872 10 1 4.9251 0.4545 -3.9293 11 1 3.6864 -1.4079 -4.8662 12 6 3.1251 -1.3847 0.4054 13 6 2.4086 -1.8112 1.6851 14 6 2.4961 -0.7276 2.7277 15 6 2.2385 -1.0772 4.0472 16 6 2.2973 -0.1296 5.0477 17 6 2.6146 1.1794 4.7359 18 6 2.8728 1.5282 3.4265 19 6 2.8169 0.5748 2.4178 20 6 3.1219 1.0226 1.0121 21 1 1.5479 -1.6162 -1.4350 22 1 2.9159 -2.1014 -0.3887 23 1 4.1993 -1.3375 0.5845 24 1 1.3608 -2.0104 1.4608 25 1 2.8724 -2.7189 2.0711 26 1 1.9898 -2.0994 4.2916 27 1 2.0961 -0.4093 6.0714 28 1 2.6605 1.9262 5.5147 29 1 3.1210 2.5508 3.1836 30 1 4.2003 1.1321 0.8966 31 1 2.6418 1.9836 0.8281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = 31.012962 kcal Electronic energy + Delta-G solvation = -15293.968884 eV Core-core repulsion = 12925.220326 eV Total energy + Delta-G solvation = -2368.748559 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81290 -37.02232 -34.11436 -32.80376 -32.14230 -29.48503 -28.59220 -24.83732 -23.02929 -22.26307 -21.76148 -19.75729 -17.71583 -16.04820 -15.68423 -14.73415 -14.35428 -14.11746 -13.82511 -13.54539 -13.06534 -12.71382 -12.51621 -12.18636 -11.85559 -11.55357 -11.30521 -11.12753 -10.88686 -10.87494 -10.72154 -10.45939 -10.26297 -10.17981 -9.55612 -8.70332 -8.56769 -8.43243 -8.14239 -6.55179 -4.39689 1.68634 1.71943 3.36622 3.37958 3.54217 4.06270 4.09187 4.15867 4.40767 5.03120 5.12565 5.16339 5.29007 5.33915 5.49713 5.68237 5.74263 5.80445 5.94608 6.05735 6.21401 6.29867 6.34975 6.43788 6.61376 6.69097 6.76728 6.79746 6.97119 7.14895 7.21404 7.36888 7.79838 8.14826 8.56038 8.96045 9.34703 10.77340 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.044273 B = 0.008264 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.282656 B = 3387.407662 C = 3528.037069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.249 3.751 3 C 0.145 3.855 4 C -0.597 4.597 5 H 0.069 0.931 6 C 0.027 3.973 7 N -0.892 5.892 8 Si 1.073 2.927 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.282 1.282 12 C -0.110 4.110 13 C -0.091 4.091 14 C -0.066 4.066 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.069 4.069 20 C -0.058 4.058 21 H 0.276 0.724 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 1.815 10.022 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.067 4.067 3 C 0.142 3.858 4 C -0.635 4.635 5 H 0.087 0.913 6 C -0.180 4.180 7 N -0.527 5.527 8 Si 0.900 3.100 9 H -0.213 1.213 10 H -0.209 1.209 11 H -0.207 1.207 12 C -0.149 4.149 13 C -0.128 4.128 14 C -0.066 4.066 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.141 4.141 19 C -0.069 4.069 20 C -0.096 4.096 21 H 0.090 0.910 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.782 1.274 8.461 9.355 hybrid contribution 0.205 0.560 1.662 1.766 sum 3.987 1.834 10.123 11.033 Atomic orbital electron populations 1.80909 1.14012 1.10820 1.12859 1.30390 0.95950 0.90876 0.89502 1.16136 0.79464 0.93590 0.96656 1.21772 1.36402 1.14655 0.90707 0.91270 1.25979 0.94649 0.93284 1.04079 1.70818 1.24686 1.29446 1.27778 0.83475 0.75768 0.76397 0.74350 1.21341 1.20881 1.20697 1.21775 0.99489 0.98367 0.95295 1.20662 1.01387 0.95751 0.94952 1.19760 0.98190 0.94413 0.94284 1.21140 1.01130 0.99326 0.92627 1.20938 1.01732 0.93606 0.98707 1.20956 1.01348 0.96240 0.96283 1.21161 1.01090 0.99142 0.92717 1.19974 0.97851 0.92721 0.96315 1.20489 1.01840 0.98729 0.88591 0.91003 0.89730 0.91208 0.91340 0.91284 0.86640 0.86717 0.86664 0.86381 0.89284 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.57 18.54 42.15 0.78 -12.79 16 2 C 0.25 6.27 9.40 -20.76 -0.20 6.07 16 3 C 0.15 3.31 0.46 -158.41 -0.07 3.23 16 4 C -0.60 -14.96 7.98 -34.44 -0.27 -15.23 16 5 H 0.07 1.67 7.76 -52.49 -0.41 1.26 16 6 C 0.03 0.72 5.07 -17.82 -0.09 0.63 16 7 N -0.89 -25.28 12.60 55.43 0.70 -24.58 16 8 Si 1.07 23.33 29.91 -169.99 -5.08 18.25 16 9 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 12 C -0.11 -2.30 4.61 -26.70 -0.12 -2.43 16 13 C -0.09 -1.68 5.17 -28.06 -0.15 -1.82 16 14 C -0.07 -1.19 5.52 -104.62 -0.58 -1.77 16 15 C -0.12 -1.93 9.61 -39.44 -0.38 -2.31 16 16 C -0.13 -1.85 10.05 -39.69 -0.40 -2.25 16 17 C -0.13 -1.82 10.05 -39.68 -0.40 -2.22 16 18 C -0.12 -1.92 9.61 -39.44 -0.38 -2.30 16 19 C -0.07 -1.23 5.43 -104.61 -0.57 -1.80 16 20 C -0.06 -1.12 4.35 -28.04 -0.12 -1.25 16 21 H 0.28 7.81 4.47 -40.82 -0.18 7.63 16 22 H 0.08 1.97 5.72 -51.93 -0.30 1.67 16 23 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 24 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 25 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 26 H 0.12 1.56 8.05 -52.49 -0.42 1.14 16 27 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 30 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 31 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 259.58 15.07 3.91 3.91 Total: -1.00 -29.38 259.58 -6.85 -36.24 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.44 Total: 2.42 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.73 Total: -23.45 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 1.48 Total: -37.37 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.08 Total: 18.25 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.38 -6.85 -36.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.252 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds