Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50701 * 109.67977 * 104.21345 * 3 2 1 5 5 H 1.08000 * 119.99960 * 119.56295 * 4 3 2 6 6 C 1.37875 * 120.00195 * 299.56091 * 4 3 2 7 7 N 1.31516 * 119.99727 * 6.79027 * 6 4 3 8 8 Si 1.86794 * 120.00188 * 186.79346 * 6 4 3 9 9 H 1.48494 * 109.47646 * 270.00194 * 8 6 4 10 10 H 1.48507 * 109.47222 * 30.00269 * 8 6 4 11 11 H 1.48502 * 109.46943 * 149.99765 * 8 6 4 12 12 C 1.53328 * 109.68548 * 343.69185 * 3 2 1 13 13 C 1.52735 * 108.39592 * 310.10496 * 12 3 2 14 14 C 1.50626 * 110.60160 * 308.95227 * 13 12 3 15 15 C 1.38916 * 117.75793 * 197.67401 * 14 13 12 16 16 C 1.37926 * 120.54665 * 180.25196 * 15 14 13 17 17 C 1.38258 * 119.77749 * 0.02932 * 16 15 14 18 18 C 1.37937 * 119.76708 * 359.86808 * 17 16 15 19 19 C 1.37667 * 122.56549 * 17.71505 * 14 13 12 20 20 C 1.50648 * 122.57716 * 359.32728 * 19 14 13 21 21 H 0.97005 * 120.00079 * 358.57862 * 7 6 4 22 22 H 1.08995 * 109.67663 * 69.83218 * 12 3 2 23 23 H 1.09000 * 109.67501 * 190.38447 * 12 3 2 24 24 H 1.08996 * 109.24804 * 69.24209 * 13 12 3 25 25 H 1.08998 * 109.24782 * 188.70049 * 13 12 3 26 26 H 1.08002 * 119.72072 * 0.23760 * 15 14 13 27 27 H 1.08004 * 120.10944 * 180.02562 * 16 15 14 28 28 H 1.07996 * 120.11827 * 179.89726 * 17 16 15 29 29 H 1.08000 * 119.72893 * 180.02562 * 18 17 16 30 30 H 1.09006 * 109.21112 * 257.49653 * 20 19 14 31 31 H 1.08991 * 109.29949 * 138.05695 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1154 0.3493 -1.3755 5 1 3.7313 1.2249 -1.5180 6 6 2.7933 -0.4495 -2.4521 7 7 1.9370 -1.4370 -2.3053 8 14 3.5729 -0.1294 -4.1191 9 1 2.7274 0.8194 -4.8872 10 1 4.9251 0.4545 -3.9293 11 1 3.6864 -1.4079 -4.8662 12 6 3.1251 -1.3847 0.4054 13 6 2.4086 -1.8112 1.6851 14 6 2.4961 -0.7276 2.7277 15 6 2.2385 -1.0772 4.0472 16 6 2.2973 -0.1296 5.0477 17 6 2.6146 1.1794 4.7359 18 6 2.8728 1.5282 3.4265 19 6 2.8169 0.5748 2.4178 20 6 3.1219 1.0226 1.0121 21 1 1.5479 -1.6162 -1.4350 22 1 2.9159 -2.1014 -0.3887 23 1 4.1993 -1.3375 0.5845 24 1 1.3608 -2.0104 1.4608 25 1 2.8724 -2.7189 2.0711 26 1 1.9898 -2.0994 4.2916 27 1 2.0961 -0.4093 6.0714 28 1 2.6605 1.9262 5.5147 29 1 3.1210 2.5508 3.1836 30 1 4.2003 1.1321 0.8966 31 1 2.6418 1.9836 0.8281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = 15.929028 kcal Electronic energy + Delta-G solvation = -15294.622973 eV Core-core repulsion = 12925.220326 eV Total energy + Delta-G solvation = -2369.402647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20850 -38.60716 -36.01760 -34.55292 -33.51617 -30.98848 -29.96295 -26.61537 -24.58694 -23.86736 -23.00140 -21.22402 -19.60221 -17.33697 -17.20880 -16.13475 -15.97378 -15.61787 -15.40469 -15.07098 -14.60816 -14.39285 -13.92745 -13.66976 -13.54064 -13.24909 -13.06673 -12.78022 -12.60464 -12.39082 -12.19930 -11.98069 -11.85237 -11.79327 -11.16468 -10.55665 -10.52384 -9.61437 -9.40184 -8.60809 -6.45624 0.50926 0.51797 1.60268 1.65717 1.84187 2.09956 2.18171 2.59881 2.88985 3.08999 3.62074 3.83230 3.90955 4.12782 4.20131 4.25730 4.36129 4.40089 4.61291 4.71407 4.73200 4.88198 4.98597 5.11937 5.18151 5.21911 5.33130 5.44691 5.64152 5.65438 5.84961 5.91228 6.13585 6.20131 6.49743 6.98104 7.36809 8.71953 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.044273 B = 0.008264 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.282656 B = 3387.407662 C = 3528.037069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C 0.259 3.741 3 C 0.132 3.868 4 C -0.600 4.600 5 H 0.078 0.922 6 C -0.020 4.020 7 N -0.927 5.927 8 Si 1.114 2.886 9 H -0.286 1.286 10 H -0.255 1.255 11 H -0.286 1.286 12 C -0.103 4.103 13 C -0.082 4.082 14 C -0.092 4.092 15 C -0.132 4.132 16 C -0.127 4.127 17 C -0.125 4.125 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.051 4.051 21 H 0.265 0.735 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 2.812 11.902 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.225 5.225 2 C -0.055 4.055 3 C 0.128 3.872 4 C -0.639 4.639 5 H 0.096 0.904 6 C -0.221 4.221 7 N -0.564 5.564 8 Si 0.936 3.064 9 H -0.212 1.212 10 H -0.178 1.178 11 H -0.212 1.212 12 C -0.142 4.142 13 C -0.119 4.119 14 C -0.092 4.092 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.093 4.093 20 C -0.089 4.089 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.150 0.850 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.141 2.287 10.363 11.792 hybrid contribution -0.219 0.278 1.168 1.221 sum 4.922 2.565 11.532 12.798 Atomic orbital electron populations 1.80873 1.15161 1.12255 1.14175 1.30969 0.96526 0.89683 0.88371 1.16476 0.77957 0.95799 0.96966 1.22175 1.35545 1.14362 0.91774 0.90434 1.27254 0.94447 0.92805 1.07576 1.70920 1.26813 1.31370 1.27324 0.82968 0.76438 0.76153 0.70826 1.21218 1.17847 1.21220 1.21633 1.00453 0.96495 0.95602 1.20535 0.99524 0.97484 0.94381 1.19781 1.00186 0.94156 0.95073 1.21385 1.00826 1.00812 0.91969 1.21374 0.99962 0.93251 0.99917 1.21394 0.99444 0.97110 0.96351 1.21404 1.00855 0.99519 0.93009 1.19960 0.99828 0.93507 0.96008 1.20387 1.02407 0.97267 0.88824 0.92214 0.92691 0.89774 0.94039 0.88864 0.84989 0.83366 0.83252 0.84609 0.87941 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -30.01 18.54 20.01 0.37 -29.64 16 2 C 0.26 13.38 9.40 89.44 0.84 14.22 16 3 C 0.13 6.04 0.46 -54.71 -0.03 6.02 16 4 C -0.60 -30.07 7.98 25.60 0.20 -29.87 16 5 H 0.08 3.67 7.76 -2.91 -0.02 3.65 16 6 C -0.02 -1.06 5.07 84.65 0.43 -0.63 16 7 N -0.93 -53.99 12.60 21.45 0.27 -53.72 16 8 Si 1.11 46.78 29.91 68.60 2.05 48.84 16 9 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 12 C -0.10 -4.35 4.61 30.62 0.14 -4.21 16 13 C -0.08 -3.06 5.17 29.74 0.15 -2.91 16 14 C -0.09 -3.19 5.52 -19.86 -0.11 -3.30 16 15 C -0.13 -3.78 9.61 22.36 0.21 -3.57 16 16 C -0.13 -3.06 10.05 22.20 0.22 -2.84 16 17 C -0.13 -3.00 10.05 22.20 0.22 -2.77 16 18 C -0.13 -3.69 9.61 22.36 0.21 -3.48 16 19 C -0.09 -3.21 5.43 -19.86 -0.11 -3.32 16 20 C -0.05 -1.92 4.35 29.74 0.13 -1.79 16 21 H 0.27 15.61 4.47 -92.70 -0.41 15.19 16 22 H 0.05 2.65 5.72 -2.39 -0.01 2.63 16 23 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16 24 H 0.04 1.74 7.31 -2.39 -0.02 1.72 16 25 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16 26 H 0.13 3.23 8.05 -2.91 -0.02 3.21 16 27 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.14 3.26 8.05 -2.91 -0.02 3.24 16 30 H 0.10 3.48 8.11 -2.38 -0.02 3.46 16 31 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 Total: -1.00 -64.25 259.58 6.71 -57.54 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.48 Total: 15.42 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 2.53 Total: -38.44 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: 0.64 Total: -83.36 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.84 kcal Total: -64.25 6.71 -57.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds