Wall clock time and date at job start Mon Mar 30 2020 02:54:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 C 1.50701 * 109.67977 * 104.21345 * 3 2 1
5 5 H 1.08000 * 119.99960 * 119.56295 * 4 3 2
6 6 C 1.37875 * 120.00195 * 299.56091 * 4 3 2
7 7 N 1.31516 * 119.99727 * 6.79027 * 6 4 3
8 8 Si 1.86794 * 120.00188 * 186.79346 * 6 4 3
9 9 H 1.48494 * 109.47646 * 270.00194 * 8 6 4
10 10 H 1.48507 * 109.47222 * 30.00269 * 8 6 4
11 11 H 1.48502 * 109.46943 * 149.99765 * 8 6 4
12 12 C 1.53328 * 109.68548 * 343.69185 * 3 2 1
13 13 C 1.52735 * 108.39592 * 310.10496 * 12 3 2
14 14 C 1.50626 * 110.60160 * 308.95227 * 13 12 3
15 15 C 1.38916 * 117.75793 * 197.67401 * 14 13 12
16 16 C 1.37926 * 120.54665 * 180.25196 * 15 14 13
17 17 C 1.38258 * 119.77749 * 0.02932 * 16 15 14
18 18 C 1.37937 * 119.76708 * 359.86808 * 17 16 15
19 19 C 1.37667 * 122.56549 * 17.71505 * 14 13 12
20 20 C 1.50648 * 122.57716 * 359.32728 * 19 14 13
21 21 H 0.97005 * 120.00079 * 358.57862 * 7 6 4
22 22 H 1.08995 * 109.67663 * 69.83218 * 12 3 2
23 23 H 1.09000 * 109.67501 * 190.38447 * 12 3 2
24 24 H 1.08996 * 109.24804 * 69.24209 * 13 12 3
25 25 H 1.08998 * 109.24782 * 188.70049 * 13 12 3
26 26 H 1.08002 * 119.72072 * 0.23760 * 15 14 13
27 27 H 1.08004 * 120.10944 * 180.02562 * 16 15 14
28 28 H 1.07996 * 120.11827 * 179.89726 * 17 16 15
29 29 H 1.08000 * 119.72893 * 180.02562 * 18 17 16
30 30 H 1.09006 * 109.21112 * 257.49653 * 20 19 14
31 31 H 1.08991 * 109.29949 * 138.05695 * 20 19 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 6 3.1154 0.3493 -1.3755
5 1 3.7313 1.2249 -1.5180
6 6 2.7933 -0.4495 -2.4521
7 7 1.9370 -1.4370 -2.3053
8 14 3.5729 -0.1294 -4.1191
9 1 2.7274 0.8194 -4.8872
10 1 4.9251 0.4545 -3.9293
11 1 3.6864 -1.4079 -4.8662
12 6 3.1251 -1.3847 0.4054
13 6 2.4086 -1.8112 1.6851
14 6 2.4961 -0.7276 2.7277
15 6 2.2385 -1.0772 4.0472
16 6 2.2973 -0.1296 5.0477
17 6 2.6146 1.1794 4.7359
18 6 2.8728 1.5282 3.4265
19 6 2.8169 0.5748 2.4178
20 6 3.1219 1.0226 1.0121
21 1 1.5479 -1.6162 -1.4350
22 1 2.9159 -2.1014 -0.3887
23 1 4.1993 -1.3375 0.5845
24 1 1.3608 -2.0104 1.4608
25 1 2.8724 -2.7189 2.0711
26 1 1.9898 -2.0994 4.2916
27 1 2.0961 -0.4093 6.0714
28 1 2.6605 1.9262 5.5147
29 1 3.1210 2.5508 3.1836
30 1 4.2003 1.1321 0.8966
31 1 2.6418 1.9836 0.8281
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075599393.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:07
Heat of formation + Delta-G solvation = 15.929028 kcal
Electronic energy + Delta-G solvation = -15294.622973 eV
Core-core repulsion = 12925.220326 eV
Total energy + Delta-G solvation = -2369.402647 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.101 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.20850 -38.60716 -36.01760 -34.55292 -33.51617 -30.98848 -29.96295 -26.61537
-24.58694 -23.86736 -23.00140 -21.22402 -19.60221 -17.33697 -17.20880 -16.13475
-15.97378 -15.61787 -15.40469 -15.07098 -14.60816 -14.39285 -13.92745 -13.66976
-13.54064 -13.24909 -13.06673 -12.78022 -12.60464 -12.39082 -12.19930 -11.98069
-11.85237 -11.79327 -11.16468 -10.55665 -10.52384 -9.61437 -9.40184 -8.60809
-6.45624 0.50926 0.51797 1.60268 1.65717 1.84187 2.09956 2.18171
2.59881 2.88985 3.08999 3.62074 3.83230 3.90955 4.12782 4.20131
4.25730 4.36129 4.40089 4.61291 4.71407 4.73200 4.88198 4.98597
5.11937 5.18151 5.21911 5.33130 5.44691 5.64152 5.65438 5.84961
5.91228 6.13585 6.20131 6.49743 6.98104 7.36809 8.71953
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.044273 B = 0.008264 C = 0.007935
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 632.282656 B = 3387.407662 C = 3528.037069
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C 0.259 3.741
3 C 0.132 3.868
4 C -0.600 4.600
5 H 0.078 0.922
6 C -0.020 4.020
7 N -0.927 5.927
8 Si 1.114 2.886
9 H -0.286 1.286
10 H -0.255 1.255
11 H -0.286 1.286
12 C -0.103 4.103
13 C -0.082 4.082
14 C -0.092 4.092
15 C -0.132 4.132
16 C -0.127 4.127
17 C -0.125 4.125
18 C -0.130 4.130
19 C -0.093 4.093
20 C -0.051 4.051
21 H 0.265 0.735
22 H 0.054 0.946
23 H 0.084 0.916
24 H 0.041 0.959
25 H 0.093 0.907
26 H 0.132 0.868
27 H 0.149 0.851
28 H 0.150 0.850
29 H 0.136 0.864
30 H 0.102 0.898
31 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.834 2.812 11.902 14.010
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.225 5.225
2 C -0.055 4.055
3 C 0.128 3.872
4 C -0.639 4.639
5 H 0.096 0.904
6 C -0.221 4.221
7 N -0.564 5.564
8 Si 0.936 3.064
9 H -0.212 1.212
10 H -0.178 1.178
11 H -0.212 1.212
12 C -0.142 4.142
13 C -0.119 4.119
14 C -0.092 4.092
15 C -0.150 4.150
16 C -0.145 4.145
17 C -0.143 4.143
18 C -0.148 4.148
19 C -0.093 4.093
20 C -0.089 4.089
21 H 0.078 0.922
22 H 0.073 0.927
23 H 0.102 0.898
24 H 0.060 0.940
25 H 0.111 0.889
26 H 0.150 0.850
27 H 0.166 0.834
28 H 0.167 0.833
29 H 0.154 0.846
30 H 0.121 0.879
31 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 5.141 2.287 10.363 11.792
hybrid contribution -0.219 0.278 1.168 1.221
sum 4.922 2.565 11.532 12.798
Atomic orbital electron populations
1.80873 1.15161 1.12255 1.14175 1.30969 0.96526 0.89683 0.88371
1.16476 0.77957 0.95799 0.96966 1.22175 1.35545 1.14362 0.91774
0.90434 1.27254 0.94447 0.92805 1.07576 1.70920 1.26813 1.31370
1.27324 0.82968 0.76438 0.76153 0.70826 1.21218 1.17847 1.21220
1.21633 1.00453 0.96495 0.95602 1.20535 0.99524 0.97484 0.94381
1.19781 1.00186 0.94156 0.95073 1.21385 1.00826 1.00812 0.91969
1.21374 0.99962 0.93251 0.99917 1.21394 0.99444 0.97110 0.96351
1.21404 1.00855 0.99519 0.93009 1.19960 0.99828 0.93507 0.96008
1.20387 1.02407 0.97267 0.88824 0.92214 0.92691 0.89774 0.94039
0.88864 0.84989 0.83366 0.83252 0.84609 0.87941 0.91508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.55 -30.01 18.54 20.01 0.37 -29.64 16
2 C 0.26 13.38 9.40 89.44 0.84 14.22 16
3 C 0.13 6.04 0.46 -54.71 -0.03 6.02 16
4 C -0.60 -30.07 7.98 25.60 0.20 -29.87 16
5 H 0.08 3.67 7.76 -2.91 -0.02 3.65 16
6 C -0.02 -1.06 5.07 84.65 0.43 -0.63 16
7 N -0.93 -53.99 12.60 21.45 0.27 -53.72 16
8 Si 1.11 46.78 29.91 68.60 2.05 48.84 16
9 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16
10 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16
11 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16
12 C -0.10 -4.35 4.61 30.62 0.14 -4.21 16
13 C -0.08 -3.06 5.17 29.74 0.15 -2.91 16
14 C -0.09 -3.19 5.52 -19.86 -0.11 -3.30 16
15 C -0.13 -3.78 9.61 22.36 0.21 -3.57 16
16 C -0.13 -3.06 10.05 22.20 0.22 -2.84 16
17 C -0.13 -3.00 10.05 22.20 0.22 -2.77 16
18 C -0.13 -3.69 9.61 22.36 0.21 -3.48 16
19 C -0.09 -3.21 5.43 -19.86 -0.11 -3.32 16
20 C -0.05 -1.92 4.35 29.74 0.13 -1.79 16
21 H 0.27 15.61 4.47 -92.70 -0.41 15.19 16
22 H 0.05 2.65 5.72 -2.39 -0.01 2.63 16
23 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16
24 H 0.04 1.74 7.31 -2.39 -0.02 1.72 16
25 H 0.09 2.91 8.12 -2.39 -0.02 2.89 16
26 H 0.13 3.23 8.05 -2.91 -0.02 3.21 16
27 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16
28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16
29 H 0.14 3.26 8.05 -2.91 -0.02 3.24 16
30 H 0.10 3.48 8.11 -2.38 -0.02 3.46 16
31 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16
Total: -1.00 -64.25 259.58 6.71 -57.54
By element:
Atomic # 1 Polarization: 13.94 SS G_CDS: 1.48 Total: 15.42 kcal
Atomic # 6 Polarization: -40.97 SS G_CDS: 2.53 Total: -38.44 kcal
Atomic # 7 Polarization: -84.00 SS G_CDS: 0.64 Total: -83.36 kcal
Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.84 kcal
Total: -64.25 6.71 -57.54 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075599393.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.470 kcal
(2) G-P(sol) polarization free energy of solvation -64.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds