Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47112 * 240.00403 * 3 2 1 5 5 H 1.48503 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46939 * 119.99665 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 12 12 C 1.38237 * 119.99747 * 59.72539 * 11 9 7 13 13 C 1.38240 * 119.99788 * 179.81066 * 12 11 9 14 14 C 1.38236 * 119.99657 * 0.39831 * 13 12 11 15 15 C 1.38230 * 120.00403 * 359.85459 * 14 13 12 16 16 C 1.38232 * 120.00112 * 240.00090 * 11 9 7 17 17 N 1.46505 * 109.47262 * 300.00249 * 9 7 2 18 18 C 1.36343 * 125.63002 * 299.69385 * 17 9 7 19 19 C 1.34852 * 108.21209 * 179.82905 * 18 17 9 20 20 C 1.40892 * 107.41919 * 0.42551 * 19 18 17 21 21 C 1.34847 * 107.41457 * 359.73324 * 20 19 18 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.00234 * 0.02562 * 12 11 9 24 24 H 1.07995 * 119.99993 * 180.23158 * 13 12 11 25 25 H 1.08005 * 119.99783 * 179.83592 * 14 13 12 26 26 H 1.08000 * 120.00473 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.99991 * 359.97438 * 16 11 9 28 28 H 1.07997 * 125.89520 * 359.95915 * 18 17 9 29 29 H 1.08001 * 126.29543 * 180.16279 * 19 18 17 30 30 H 1.08001 * 126.29231 * 179.73866 * 20 19 18 31 31 H 1.08003 * 125.89205 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 6 2.2303 -3.6447 -0.0005 12 6 3.1381 -3.7778 1.0334 13 6 4.0338 -4.8308 1.0354 14 6 4.0270 -5.7459 -0.0007 15 6 3.1226 -5.6097 -1.0372 16 6 2.2244 -4.5590 -1.0373 17 7 0.4091 -2.5770 1.1959 18 6 0.8545 -2.5423 2.4841 19 6 -0.2137 -2.6349 3.3020 20 6 -1.3596 -2.7402 2.4890 21 6 -0.9485 -2.7020 1.2053 22 1 -0.4849 0.8401 0.0004 23 1 3.1454 -3.0612 1.8414 24 1 4.7406 -4.9369 1.8450 25 1 4.7285 -6.5670 -0.0005 26 1 3.1176 -6.3244 -1.8469 27 1 1.5178 -4.4526 -1.8471 28 1 1.8847 -2.4535 2.7957 29 1 -0.1942 -2.6333 4.3818 30 1 -2.3797 -2.8342 2.8310 31 1 -1.5848 -2.7608 0.3346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075599410.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 73.036270 kcal Electronic energy + Delta-G solvation = -15221.076067 eV Core-core repulsion = 12854.149776 eV Total energy + Delta-G solvation = -2366.926291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93585 -38.35387 -33.99043 -31.72677 -30.41884 -29.26095 -27.45102 -26.46432 -23.46058 -22.02584 -20.67668 -19.03129 -18.86921 -16.98909 -16.32812 -15.55504 -14.97592 -14.44507 -13.97507 -13.30746 -12.95717 -12.69296 -12.45394 -12.07336 -11.95317 -11.65356 -11.19130 -11.09902 -10.99101 -10.85640 -10.63126 -10.36756 -9.87420 -9.69469 -8.76270 -8.39012 -8.14219 -7.22612 -6.81085 -6.27025 -4.44901 1.90944 1.93956 3.18999 3.25106 3.26644 3.77238 4.19109 4.26199 4.27474 4.68982 5.21700 5.37502 5.40574 5.53598 5.71984 6.03056 6.10552 6.31718 6.43326 6.47267 6.52972 6.62944 6.76405 6.83975 6.96498 7.02307 7.36561 7.44722 7.51796 7.55935 7.63126 7.83775 8.31222 8.55191 8.76020 8.94648 9.27166 10.74928 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.011713 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.108529 B = 2389.867449 C = 3148.730524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.283 3.717 10 H 0.062 0.938 11 C -0.059 4.059 12 C -0.100 4.100 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.127 4.127 16 C -0.118 4.118 17 N -0.386 5.386 18 C -0.002 4.002 19 C -0.236 4.236 20 C -0.241 4.241 21 C 0.021 3.979 22 H 0.268 0.732 23 H 0.125 0.875 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -6.897 0.059 7.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.185 3.815 10 H 0.080 0.920 11 C -0.060 4.060 12 C -0.118 4.118 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.137 4.137 17 N -0.056 5.056 18 C -0.136 4.136 19 C -0.261 4.261 20 C -0.265 4.265 21 C -0.114 4.114 22 H 0.078 0.922 23 H 0.143 0.857 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.836 -6.752 -0.295 7.772 hybrid contribution 0.359 1.102 0.048 1.160 sum 4.196 -5.651 -0.247 7.042 Atomic orbital electron populations 1.69957 1.06002 1.27765 1.45074 1.25074 0.94922 0.99658 0.93265 0.86502 0.79621 0.82171 0.78929 1.19911 1.21008 1.19851 1.21111 0.93273 0.88858 1.54603 0.91377 1.18147 0.87724 0.91282 0.84321 0.91997 1.20507 0.96546 0.95202 0.93752 1.21237 0.94513 0.97332 0.98745 1.21094 0.99390 0.95612 0.98543 1.20961 0.99715 0.99589 0.95316 1.20989 0.96623 0.98354 0.98593 1.21059 0.99317 0.94593 0.98717 1.45149 1.05644 1.48802 1.06041 1.21372 0.98063 1.10011 0.84161 1.20492 0.93012 1.15275 0.97288 1.20452 0.97234 1.15891 0.92958 1.21372 0.84689 1.07928 0.97395 0.92167 0.85682 0.86824 0.87041 0.86868 0.86544 0.84258 0.87107 0.87121 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.32 12.26 55.43 0.68 -22.64 16 2 C 0.08 2.08 5.39 -17.82 -0.10 1.99 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.90 8.07 -34.44 -0.28 -14.18 16 8 H 0.07 1.74 7.59 -52.49 -0.40 1.35 16 9 C 0.28 6.74 2.50 -70.23 -0.18 6.57 16 10 H 0.06 1.55 7.80 -51.93 -0.40 1.15 16 11 C -0.06 -1.23 4.92 -104.62 -0.51 -1.75 16 12 C -0.10 -1.93 8.26 -39.58 -0.33 -2.26 16 13 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 14 C -0.14 -2.10 10.05 -39.58 -0.40 -2.49 16 15 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 16 C -0.12 -2.17 9.67 -39.58 -0.38 -2.55 16 17 N -0.39 -9.23 2.01 -112.50 -0.23 -9.46 16 18 C 0.00 -0.05 9.75 -16.75 -0.16 -0.22 16 19 C -0.24 -5.27 10.86 -39.78 -0.43 -5.70 16 20 C -0.24 -5.41 10.86 -39.78 -0.43 -5.84 16 21 C 0.02 0.49 10.80 -16.75 -0.18 0.31 16 22 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.13 2.45 5.54 -52.48 -0.29 2.16 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 25 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 26 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.12 1.98 7.95 -52.48 -0.42 1.56 16 28 H 0.14 2.99 5.89 -52.49 -0.31 2.68 16 29 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 30 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.14 3.05 8.06 -52.48 -0.42 2.63 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -28.07 267.78 -8.20 -36.27 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.49 Total: 7.30 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -4.18 Total: -31.04 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.45 Total: -32.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.07 -8.20 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599410.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.306 kcal (2) G-P(sol) polarization free energy of solvation -28.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds