Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48495 * 109.47112 * 240.00403 * 3 2 1 5 5 H 1.48503 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46939 * 119.99665 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 12 12 C 1.38237 * 119.99747 * 59.72539 * 11 9 7 13 13 C 1.38240 * 119.99788 * 179.81066 * 12 11 9 14 14 C 1.38236 * 119.99657 * 0.39831 * 13 12 11 15 15 C 1.38230 * 120.00403 * 359.85459 * 14 13 12 16 16 C 1.38232 * 120.00112 * 240.00090 * 11 9 7 17 17 N 1.46505 * 109.47262 * 300.00249 * 9 7 2 18 18 C 1.36343 * 125.63002 * 299.69385 * 17 9 7 19 19 C 1.34852 * 108.21209 * 179.82905 * 18 17 9 20 20 C 1.40892 * 107.41919 * 0.42551 * 19 18 17 21 21 C 1.34847 * 107.41457 * 359.73324 * 20 19 18 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.00234 * 0.02562 * 12 11 9 24 24 H 1.07995 * 119.99993 * 180.23158 * 13 12 11 25 25 H 1.08005 * 119.99783 * 179.83592 * 14 13 12 26 26 H 1.08000 * 120.00473 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.99991 * 359.97438 * 16 11 9 28 28 H 1.07997 * 125.89520 * 359.95915 * 18 17 9 29 29 H 1.08001 * 126.29543 * 180.16279 * 19 18 17 30 30 H 1.08001 * 126.29231 * 179.73866 * 20 19 18 31 31 H 1.08003 * 125.89205 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 6 2.2303 -3.6447 -0.0005 12 6 3.1381 -3.7778 1.0334 13 6 4.0338 -4.8308 1.0354 14 6 4.0270 -5.7459 -0.0007 15 6 3.1226 -5.6097 -1.0372 16 6 2.2244 -4.5590 -1.0373 17 7 0.4091 -2.5770 1.1959 18 6 0.8545 -2.5423 2.4841 19 6 -0.2137 -2.6349 3.3020 20 6 -1.3596 -2.7402 2.4890 21 6 -0.9485 -2.7020 1.2053 22 1 -0.4849 0.8401 0.0004 23 1 3.1454 -3.0612 1.8414 24 1 4.7406 -4.9369 1.8450 25 1 4.7285 -6.5670 -0.0005 26 1 3.1176 -6.3244 -1.8469 27 1 1.5178 -4.4526 -1.8471 28 1 1.8847 -2.4535 2.7957 29 1 -0.1942 -2.6333 4.3818 30 1 -2.3797 -2.8342 2.8310 31 1 -1.5848 -2.7608 0.3346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075599410.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = 60.372094 kcal Electronic energy + Delta-G solvation = -15221.625227 eV Core-core repulsion = 12854.149776 eV Total energy + Delta-G solvation = -2367.475451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68043 -39.76955 -35.79196 -33.52913 -31.75661 -30.84988 -29.22860 -28.32154 -25.21426 -23.38977 -22.17609 -20.78768 -20.66284 -18.90099 -17.79597 -17.24808 -16.68417 -15.96383 -15.49615 -14.98002 -14.46313 -14.31365 -14.04655 -13.86785 -13.47324 -13.34730 -12.88995 -12.85110 -12.76963 -12.59340 -12.31581 -11.84186 -11.57222 -11.50325 -10.76150 -9.72518 -9.55350 -9.03599 -8.63059 -8.24394 -6.49238 0.54493 0.59884 1.36532 1.38229 1.45556 1.95695 2.31928 2.48003 2.64179 3.07466 3.30062 4.06453 4.11244 4.26209 4.31292 4.57168 4.60775 4.64060 4.76752 4.86409 5.02649 5.07483 5.18998 5.27934 5.54675 5.64399 5.65695 5.69102 5.76136 5.83418 5.98343 6.23145 6.54682 6.55967 6.94914 7.11559 7.26110 8.74669 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.011713 C = 0.008890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.108529 B = 2389.867449 C = 3148.730524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.286 3.714 10 H 0.034 0.966 11 C -0.089 4.089 12 C -0.119 4.119 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.122 4.122 16 C -0.135 4.135 17 N -0.391 5.391 18 C -0.017 4.017 19 C -0.241 4.241 20 C -0.243 4.243 21 C -0.005 4.005 22 H 0.265 0.735 23 H 0.112 0.888 24 H 0.143 0.857 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -8.184 0.465 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.187 3.813 10 H 0.052 0.948 11 C -0.090 4.090 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.139 4.139 16 C -0.154 4.154 17 N -0.061 5.061 18 C -0.151 4.151 19 C -0.266 4.266 20 C -0.268 4.268 21 C -0.139 4.139 22 H 0.075 0.925 23 H 0.130 0.870 24 H 0.161 0.839 25 H 0.171 0.829 26 H 0.166 0.834 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.417 -8.047 0.107 9.701 hybrid contribution -0.098 1.393 -0.091 1.399 sum 5.319 -6.654 0.017 8.519 Atomic orbital electron populations 1.70075 1.07157 1.28043 1.46564 1.25793 0.95620 1.02596 0.93098 0.85604 0.78449 0.78583 0.79047 1.19134 1.20994 1.19646 1.21337 0.93160 0.90044 1.54124 0.91882 1.17944 0.87774 0.92258 0.83348 0.94795 1.20342 0.97237 0.95533 0.95853 1.21223 0.95608 0.98628 0.98268 1.21438 0.98757 0.94492 0.99772 1.21460 0.99406 0.99789 0.93927 1.21386 0.95301 0.97593 0.99663 1.21222 1.00522 0.95356 0.98294 1.45062 1.05777 1.48928 1.06320 1.21697 0.98971 1.10396 0.84045 1.20862 0.92552 1.14557 0.98625 1.20793 0.98519 1.14937 0.92504 1.21622 0.84904 1.09188 0.98209 0.92548 0.86981 0.83880 0.82942 0.83411 0.86481 0.83367 0.84521 0.84832 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.54 12.26 21.45 0.26 -49.27 16 2 C 0.03 1.82 5.39 84.65 0.46 2.28 16 3 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -28.98 8.07 25.60 0.21 -28.77 16 8 H 0.06 3.31 7.59 -2.91 -0.02 3.29 16 9 C 0.29 14.10 2.50 43.50 0.11 14.21 16 10 H 0.03 1.81 7.80 -2.39 -0.02 1.80 16 11 C -0.09 -3.75 4.92 -19.87 -0.10 -3.84 16 12 C -0.12 -4.54 8.26 22.27 0.18 -4.36 16 13 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 14 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 15 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 16 C -0.14 -4.91 9.67 22.27 0.22 -4.69 16 17 N -0.39 -19.17 2.01 -509.84 -1.03 -20.19 16 18 C -0.02 -0.81 9.75 83.21 0.81 0.00 16 19 C -0.24 -10.61 10.86 22.14 0.24 -10.36 16 20 C -0.24 -10.84 10.86 22.14 0.24 -10.60 16 21 C 0.00 -0.23 10.80 83.21 0.90 0.67 16 22 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.11 4.45 5.54 -2.91 -0.02 4.43 16 24 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 25 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 26 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 27 H 0.12 4.06 7.95 -2.91 -0.02 4.04 16 28 H 0.15 6.45 5.89 -2.91 -0.02 6.43 16 29 H 0.14 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.13 5.20 8.06 -2.91 -0.02 5.18 16 31 H 0.14 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -60.74 267.78 6.31 -54.43 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 1.11 Total: 25.85 kcal Atomic # 6 Polarization: -59.41 SS G_CDS: 3.94 Total: -55.48 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.76 Total: -69.47 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.74 6.31 -54.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075599410.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.801 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds