Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48496 * 109.47380 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47032 * 300.00506 * 3 2 1 6 6 H 1.48501 * 109.46761 * 60.00029 * 3 2 1 7 7 C 1.37884 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99514 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99968 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47299 * 299.99667 * 9 7 2 11 11 N 1.46897 * 109.47226 * 60.00345 * 9 7 2 12 12 C 1.50706 * 109.46879 * 179.97438 * 9 7 2 13 13 C 1.39373 * 119.50462 * 279.72762 * 12 9 7 14 14 C 1.36102 * 120.98310 * 179.73280 * 13 12 9 15 15 C 1.40539 * 119.65413 * 0.55554 * 14 13 12 16 16 C 1.40530 * 121.28188 * 179.72580 * 15 14 13 17 17 C 1.36096 * 119.65852 * 180.02562 * 16 15 14 18 18 C 1.39383 * 120.98053 * 359.95328 * 17 16 15 19 19 C 1.36088 * 120.99034 * 0.02562 * 18 17 16 20 20 C 1.40536 * 119.65802 * 359.97438 * 19 18 17 21 21 C 1.36094 * 119.50193 * 99.99880 * 12 9 7 22 22 H 0.97008 * 119.99799 * 359.97438 * 1 2 3 23 23 H 1.00895 * 111.00305 * 59.99681 * 11 9 7 24 24 H 1.00897 * 111.00182 * 183.95453 * 11 9 7 25 25 H 1.08000 * 119.50771 * 359.97438 * 13 12 9 26 26 H 1.07998 * 120.17107 * 180.27914 * 14 13 12 27 27 H 1.08007 * 120.17484 * 0.02880 * 16 15 14 28 28 H 1.07991 * 119.51071 * 179.97438 * 17 16 15 29 29 H 1.07998 * 119.49850 * 180.02562 * 18 17 16 30 30 H 1.08006 * 120.17083 * 180.02562 * 19 18 17 31 31 H 1.07998 * 120.17301 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 7 0.4059 -2.5767 -1.1997 12 6 2.2302 -3.6447 -0.0018 13 6 2.8311 -4.0327 -1.1980 14 6 3.7237 -5.0595 -1.2328 15 6 4.0378 -5.7483 -0.0488 16 6 4.9502 -6.8172 -0.0465 17 6 5.2297 -7.4615 1.1193 18 6 4.6247 -7.0768 2.3146 19 6 3.7367 -6.0462 2.3505 20 6 3.4230 -5.3569 1.1667 21 6 2.5103 -4.2883 1.1642 22 1 -0.4850 0.8401 0.0004 23 1 0.9635 -2.5251 -2.0389 24 1 -0.1581 -3.4133 -1.1911 25 1 2.5876 -3.5083 -2.1102 26 1 4.1850 -5.3463 -2.1663 27 1 5.4272 -7.1257 -0.9651 28 1 5.9309 -8.2828 1.1182 29 1 4.8643 -7.6046 3.2258 30 1 3.2760 -5.7590 3.2842 31 1 2.0339 -3.9791 2.0828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095658819.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = 39.097391 kcal Electronic energy + Delta-G solvation = -14666.914884 eV Core-core repulsion = 12298.516893 eV Total energy + Delta-G solvation = -2368.397991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93620 -36.78848 -33.92054 -32.29024 -31.46613 -29.21776 -28.74916 -25.92196 -23.16649 -22.85800 -21.49378 -20.44810 -16.93410 -16.63383 -16.11632 -15.67998 -14.56069 -14.33471 -14.07772 -13.87190 -13.23766 -13.00184 -12.91359 -12.38132 -12.28238 -11.73619 -11.21107 -11.06062 -10.82861 -10.73648 -10.49545 -10.34834 -9.81012 -9.58316 -9.14841 -8.45099 -8.02554 -7.41859 -7.08556 -5.89483 -4.04674 0.95099 1.45843 2.49600 3.31814 3.39626 3.42023 3.47639 4.45142 4.60990 4.93800 5.09530 5.21816 5.34593 5.42606 5.48084 5.63796 5.76784 5.93275 5.99539 6.11174 6.28871 6.37459 6.53623 6.64417 6.68231 6.78278 7.02238 7.11629 7.21506 7.52639 7.56847 7.89274 8.16170 8.60635 8.98064 9.12819 9.64205 11.14702 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.040324 B = 0.006595 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.214065 B = 4244.515276 C = 4363.749789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.251 3.749 10 H 0.048 0.952 11 N -0.809 5.809 12 C -0.067 4.067 13 C -0.098 4.098 14 C -0.122 4.122 15 C -0.066 4.066 16 C -0.104 4.104 17 C -0.135 4.135 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.045 4.045 21 C -0.122 4.122 22 H 0.255 0.745 23 H 0.317 0.683 24 H 0.299 0.701 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -12.153 0.761 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.141 3.859 10 H 0.066 0.934 11 N -0.335 5.335 12 C -0.070 4.070 13 C -0.116 4.116 14 C -0.140 4.140 15 C -0.066 4.066 16 C -0.122 4.122 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.045 4.045 21 C -0.141 4.141 22 H 0.065 0.935 23 H 0.130 0.870 24 H 0.109 0.891 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.516 -11.340 1.022 13.118 hybrid contribution 1.122 0.081 -0.223 1.147 sum 7.638 -11.258 0.799 13.629 Atomic orbital electron populations 1.70115 1.05678 1.25636 1.46692 1.24949 0.94647 0.98561 0.94154 0.86691 0.80290 0.84293 0.77560 1.19881 1.20994 1.21037 1.20858 0.92273 0.89381 1.54448 0.92776 1.18281 0.87551 0.88957 0.91085 0.93443 1.59197 1.28025 1.41993 1.04299 1.21521 0.97073 0.96344 0.92059 1.20836 0.96128 0.95972 0.98660 1.20925 0.99307 0.97131 0.96683 1.18023 0.98165 0.96975 0.93460 1.20950 0.97589 0.95560 0.98092 1.20682 1.01040 1.00623 0.92945 1.20715 0.98124 0.98054 0.97753 1.21031 0.98181 0.95916 0.97288 1.18180 0.97098 0.96360 0.92830 1.20925 0.98810 0.95567 0.98766 0.93462 0.86998 0.89124 0.86218 0.86417 0.86319 0.86768 0.86689 0.85992 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.47 12.77 55.43 0.71 -23.76 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16 3 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -14.47 8.70 -34.44 -0.30 -14.77 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.25 6.12 2.83 -70.02 -0.20 5.92 16 10 H 0.05 1.27 7.95 -51.93 -0.41 0.86 16 11 N -0.81 -18.66 8.35 -6.65 -0.06 -18.71 16 12 C -0.07 -1.41 4.85 -104.97 -0.51 -1.92 16 13 C -0.10 -1.84 9.19 -39.93 -0.37 -2.20 16 14 C -0.12 -2.04 9.77 -39.48 -0.39 -2.43 16 15 C -0.07 -1.12 5.74 -106.84 -0.61 -1.73 16 16 C -0.10 -1.46 9.77 -39.49 -0.39 -1.85 16 17 C -0.13 -1.73 9.95 -39.93 -0.40 -2.13 16 18 C -0.13 -1.69 9.95 -39.93 -0.40 -2.08 16 19 C -0.11 -1.60 9.77 -39.49 -0.39 -1.98 16 20 C -0.04 -0.79 5.74 -106.83 -0.61 -1.40 16 21 C -0.12 -2.38 9.36 -39.48 -0.37 -2.75 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.32 6.91 7.27 -39.29 -0.29 6.63 16 24 H 0.30 6.17 9.06 -39.29 -0.36 5.81 16 25 H 0.12 2.16 6.59 -52.49 -0.35 1.81 16 26 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.12 2.30 8.00 -52.49 -0.42 1.88 16 LS Contribution 268.19 15.07 4.04 4.04 Total: -1.00 -29.84 268.19 -8.82 -38.66 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -3.48 Total: 10.62 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -5.02 Total: -27.10 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.65 Total: -42.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.84 -8.82 -38.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095658819.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.757 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds