Wall clock time and date at job start Mon Mar 30 2020 03:25:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.36001 * 119.80453 * 2 1
4 4 C 1.41070 * 118.19115 * 180.23849 * 3 2 1
5 5 C 1.40031 * 121.97202 * 179.81093 * 4 3 2
6 6 C 1.36385 * 119.46815 * 179.97438 * 5 4 3
7 7 C 1.39203 * 121.59340 * 359.97438 * 6 5 4
8 8 C 1.36072 * 121.71411 * 0.02917 * 7 6 5
9 9 C 1.50699 * 120.26424 * 180.02562 * 8 7 6
10 10 C 1.40893 * 119.47370 * 359.95059 * 8 7 6
11 11 N 1.33001 * 121.77583 * 180.02562 * 10 8 7
12 12 C 1.33038 * 120.94232 * 179.97438 * 11 10 8
13 13 C 1.41248 * 119.01199 * 179.97438 * 12 11 10
14 14 H 1.08000 * 119.99458 * 185.27125 * 13 12 11
15 15 C 1.40155 * 120.00055 * 5.00294 * 13 12 11
16 16 N 1.30656 * 120.00133 * 353.78717 * 15 13 12
17 17 Si 1.86805 * 119.99929 * 173.79221 * 15 13 12
18 18 H 1.48501 * 109.47165 * 94.98212 * 17 15 13
19 19 H 1.48495 * 109.47423 * 214.98036 * 17 15 13
20 20 H 1.48502 * 109.46921 * 334.98499 * 17 15 13
21 21 H 1.08997 * 109.47004 * 270.22724 * 1 2 3
22 22 H 1.09004 * 109.46771 * 30.22288 * 1 2 3
23 23 H 1.09001 * 109.47102 * 150.22266 * 1 2 3
24 24 H 1.07996 * 120.90157 * 0.02562 * 3 2 1
25 25 H 1.07997 * 120.26273 * 359.95136 * 5 4 3
26 26 H 1.08003 * 119.20180 * 180.02562 * 6 5 4
27 27 H 1.08001 * 119.14773 * 180.02562 * 7 6 5
28 28 H 1.08992 * 109.47341 * 269.93439 * 9 8 7
29 29 H 1.08998 * 109.46814 * 29.93745 * 9 8 7
30 30 H 1.08995 * 109.47028 * 149.92918 * 9 8 7
31 31 H 0.97003 * 119.99615 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1830 1.1801 0.0000
4 6 3.5931 1.1404 -0.0052
5 6 4.3677 2.3070 -0.0095
6 6 5.7281 2.2090 -0.0139
7 6 6.3703 0.9740 -0.0137
8 6 5.6734 -0.1947 -0.0097
9 6 6.4023 -1.5136 -0.0090
10 6 4.2649 -0.1618 -0.0045
11 7 3.5383 -1.2758 0.0000
12 6 2.2089 -1.2255 0.0053
13 6 1.4776 -2.4339 0.0095
14 1 0.4009 -2.4137 -0.0722
15 6 2.1497 -3.6594 0.1138
16 7 3.4555 -3.6929 0.0850
17 14 1.1784 -5.2449 0.2940
18 1 0.9908 -5.8650 -1.0422
19 1 1.9201 -6.1824 1.1750
20 1 -0.1478 -4.9476 0.8923
21 1 -0.3633 0.0041 1.0276
22 1 -0.3633 0.8880 -0.5173
23 1 -0.3633 -0.8920 -0.5104
24 1 1.6546 2.1220 0.0004
25 1 3.8917 3.2764 -0.0097
26 1 6.3213 3.1115 -0.0168
27 1 7.4499 0.9425 -0.0168
28 1 6.5744 -1.8342 -1.0364
29 1 7.3588 -1.3999 0.5013
30 1 5.8010 -2.2608 0.5089
31 1 3.9205 -4.5411 0.1569
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000213209212.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:40
Heat of formation + Delta-G solvation = 20.604022 kcal
Electronic energy + Delta-G solvation = -15095.900693 eV
Core-core repulsion = 12726.700769 eV
Total energy + Delta-G solvation = -2369.199924 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.101 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.75075 -37.97502 -35.38211 -34.41266 -32.90637 -31.41170 -28.46155 -27.45819
-26.95380 -23.78192 -22.77301 -21.23889 -19.57113 -18.35321 -16.90982 -16.73291
-16.24405 -15.09435 -15.02352 -14.74364 -14.34641 -14.13119 -14.04540 -13.39901
-13.20053 -13.16375 -12.93264 -12.77848 -12.70473 -12.25536 -12.04670 -12.00403
-11.91330 -11.37270 -10.96909 -10.62780 -9.39025 -9.14710 -8.59703 -8.26988
-6.46259 0.06646 0.52152 1.41377 1.45056 1.55587 1.71972 2.21304
2.39602 3.09443 3.97779 4.00235 4.12783 4.34382 4.42098 4.53874
4.60233 4.65901 4.81481 4.86422 4.95171 4.99323 4.99399 5.13236
5.16532 5.34863 5.43908 5.55049 5.67361 5.86843 5.92365 5.96654
6.11665 6.17440 6.49556 6.70475 6.95883 8.25372 8.43982
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.028750 B = 0.010269 C = 0.007614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.680558 B = 2725.898828 C = 3676.660447
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.086 4.086
2 C -0.197 4.197
3 C -0.079 4.079
4 C -0.226 4.226
5 C -0.078 4.078
6 C -0.191 4.191
7 C -0.099 4.099
8 C -0.136 4.136
9 C -0.082 4.082
10 C 0.140 3.860
11 N -0.530 5.530
12 C 0.217 3.783
13 C -0.440 4.440
14 H 0.104 0.896
15 C 0.018 3.982
16 N -0.733 5.733
17 Si 0.985 3.015
18 H -0.264 1.264
19 H -0.272 1.272
20 H -0.251 1.251
21 H 0.064 0.936
22 H 0.071 0.929
23 H 0.063 0.937
24 H 0.140 0.860
25 H 0.135 0.865
26 H 0.139 0.861
27 H 0.136 0.864
28 H 0.048 0.952
29 H 0.070 0.930
30 H 0.055 0.945
31 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.501 4.232 0.264 4.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.201 4.201
3 C -0.101 4.101
4 C -0.230 4.230
5 C -0.096 4.096
6 C -0.210 4.210
7 C -0.118 4.118
8 C -0.138 4.138
9 C -0.138 4.138
10 C 0.008 3.992
11 N -0.245 5.245
12 C 0.085 3.915
13 C -0.472 4.472
14 H 0.122 0.878
15 C -0.206 4.206
16 N -0.355 5.355
17 Si 0.805 3.195
18 H -0.189 1.189
19 H -0.197 1.197
20 H -0.174 1.174
21 H 0.083 0.917
22 H 0.090 0.910
23 H 0.082 0.918
24 H 0.158 0.842
25 H 0.153 0.847
26 H 0.157 0.843
27 H 0.153 0.847
28 H 0.067 0.933
29 H 0.089 0.911
30 H 0.074 0.926
31 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 0.115 3.300 0.268 3.313
hybrid contribution -0.608 0.023 0.032 0.610
sum -0.493 3.323 0.301 3.373
Atomic orbital electron populations
1.20564 0.89781 1.02281 1.01722 1.20986 0.98169 0.93987 1.06939
1.21090 0.92639 0.97751 0.98651 1.19947 0.94629 0.94781 1.13683
1.20953 0.94369 0.96432 0.97848 1.20702 0.94477 0.97622 1.08219
1.20730 0.99987 0.91580 0.99524 1.19710 0.91381 0.96736 1.05949
1.20356 0.98423 0.94252 1.00800 1.20748 0.94781 0.89182 0.94526
1.69222 1.05768 1.25708 1.23827 1.19158 0.89356 0.92930 0.90082
1.20285 0.95588 0.90152 1.41145 0.87805 1.27068 0.95897 1.04277
0.93320 1.70253 1.09851 1.28000 1.27375 0.85152 0.79236 0.76022
0.79119 1.18885 1.19697 1.17389 0.91718 0.91009 0.91791 0.84211
0.84743 0.84272 0.84659 0.93303 0.91099 0.92592 0.91148
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.17 9.47 71.24 0.67 -2.49 16
2 C -0.20 -9.26 5.90 -19.65 -0.12 -9.38 16
3 C -0.08 -3.45 9.53 22.44 0.21 -3.23 16
4 C -0.23 -10.61 5.88 -19.99 -0.12 -10.72 16
5 C -0.08 -2.98 9.80 22.27 0.22 -2.76 16
6 C -0.19 -6.77 9.92 22.07 0.22 -6.55 16
7 C -0.10 -3.76 9.54 22.00 0.21 -3.55 16
8 C -0.14 -6.30 5.90 -19.72 -0.12 -6.41 16
9 C -0.08 -3.50 9.82 71.24 0.70 -2.80 16
10 C 0.14 7.39 6.73 41.78 0.28 7.67 16
11 N -0.53 -30.46 6.95 -178.56 -1.24 -31.70 16
12 C 0.22 11.90 6.53 40.43 0.26 12.16 16
13 C -0.44 -22.87 8.65 23.48 0.20 -22.67 16
14 H 0.10 4.87 5.83 -2.91 -0.02 4.85 16
15 C 0.02 0.89 5.49 85.33 0.47 1.36 16
16 N -0.73 -39.09 11.43 21.86 0.25 -38.84 16
17 Si 0.98 36.99 29.57 68.60 2.03 39.02 16
18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16
19 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16
20 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16
21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
22 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16
23 H 0.06 2.36 6.16 -2.39 -0.01 2.34 16
24 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16
25 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16
26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16
27 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16
28 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16
29 H 0.07 2.49 8.08 -2.39 -0.02 2.47 16
30 H 0.06 2.75 7.61 -2.39 -0.02 2.73 16
31 H 0.28 13.43 8.29 -92.71 -0.77 12.66 16
Total: -1.00 -64.16 265.00 5.27 -58.89
By element:
Atomic # 1 Polarization: 20.89 SS G_CDS: 1.13 Total: 22.02 kcal
Atomic # 6 Polarization: -52.50 SS G_CDS: 3.10 Total: -49.39 kcal
Atomic # 7 Polarization: -69.55 SS G_CDS: -0.99 Total: -70.54 kcal
Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal
Total: -64.16 5.27 -58.89 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000213209212.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.496 kcal
(2) G-P(sol) polarization free energy of solvation -64.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.892 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds