Wall clock time and date at job start Mon Mar 30 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36001 * 119.80453 * 2 1 4 4 C 1.41070 * 118.19115 * 180.23849 * 3 2 1 5 5 C 1.40031 * 121.97202 * 179.81093 * 4 3 2 6 6 C 1.36385 * 119.46815 * 179.97438 * 5 4 3 7 7 C 1.39203 * 121.59340 * 359.97438 * 6 5 4 8 8 C 1.36072 * 121.71411 * 0.02917 * 7 6 5 9 9 C 1.50699 * 120.26424 * 180.02562 * 8 7 6 10 10 C 1.40893 * 119.47370 * 359.95059 * 8 7 6 11 11 N 1.33001 * 121.77583 * 180.02562 * 10 8 7 12 12 C 1.33038 * 120.94232 * 179.97438 * 11 10 8 13 13 C 1.41248 * 119.01199 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99458 * 185.27125 * 13 12 11 15 15 C 1.40155 * 120.00055 * 5.00294 * 13 12 11 16 16 N 1.30656 * 120.00133 * 353.78717 * 15 13 12 17 17 Si 1.86805 * 119.99929 * 173.79221 * 15 13 12 18 18 H 1.48501 * 109.47165 * 94.98212 * 17 15 13 19 19 H 1.48495 * 109.47423 * 214.98036 * 17 15 13 20 20 H 1.48502 * 109.46921 * 334.98499 * 17 15 13 21 21 H 1.08997 * 109.47004 * 270.22724 * 1 2 3 22 22 H 1.09004 * 109.46771 * 30.22288 * 1 2 3 23 23 H 1.09001 * 109.47102 * 150.22266 * 1 2 3 24 24 H 1.07996 * 120.90157 * 0.02562 * 3 2 1 25 25 H 1.07997 * 120.26273 * 359.95136 * 5 4 3 26 26 H 1.08003 * 119.20180 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.14773 * 180.02562 * 7 6 5 28 28 H 1.08992 * 109.47341 * 269.93439 * 9 8 7 29 29 H 1.08998 * 109.46814 * 29.93745 * 9 8 7 30 30 H 1.08995 * 109.47028 * 149.92918 * 9 8 7 31 31 H 0.97003 * 119.99615 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1830 1.1801 0.0000 4 6 3.5931 1.1404 -0.0052 5 6 4.3677 2.3070 -0.0095 6 6 5.7281 2.2090 -0.0139 7 6 6.3703 0.9740 -0.0137 8 6 5.6734 -0.1947 -0.0097 9 6 6.4023 -1.5136 -0.0090 10 6 4.2649 -0.1618 -0.0045 11 7 3.5383 -1.2758 0.0000 12 6 2.2089 -1.2255 0.0053 13 6 1.4776 -2.4339 0.0095 14 1 0.4009 -2.4137 -0.0722 15 6 2.1497 -3.6594 0.1138 16 7 3.4555 -3.6929 0.0850 17 14 1.1784 -5.2449 0.2940 18 1 0.9908 -5.8650 -1.0422 19 1 1.9201 -6.1824 1.1750 20 1 -0.1478 -4.9476 0.8923 21 1 -0.3633 0.0041 1.0276 22 1 -0.3633 0.8880 -0.5173 23 1 -0.3633 -0.8920 -0.5104 24 1 1.6546 2.1220 0.0004 25 1 3.8917 3.2764 -0.0097 26 1 6.3213 3.1115 -0.0168 27 1 7.4499 0.9425 -0.0168 28 1 6.5744 -1.8342 -1.0364 29 1 7.3588 -1.3999 0.5013 30 1 5.8010 -2.2608 0.5089 31 1 3.9205 -4.5411 0.1569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213209212.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:40 Heat of formation + Delta-G solvation = 20.604022 kcal Electronic energy + Delta-G solvation = -15095.900693 eV Core-core repulsion = 12726.700769 eV Total energy + Delta-G solvation = -2369.199924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75075 -37.97502 -35.38211 -34.41266 -32.90637 -31.41170 -28.46155 -27.45819 -26.95380 -23.78192 -22.77301 -21.23889 -19.57113 -18.35321 -16.90982 -16.73291 -16.24405 -15.09435 -15.02352 -14.74364 -14.34641 -14.13119 -14.04540 -13.39901 -13.20053 -13.16375 -12.93264 -12.77848 -12.70473 -12.25536 -12.04670 -12.00403 -11.91330 -11.37270 -10.96909 -10.62780 -9.39025 -9.14710 -8.59703 -8.26988 -6.46259 0.06646 0.52152 1.41377 1.45056 1.55587 1.71972 2.21304 2.39602 3.09443 3.97779 4.00235 4.12783 4.34382 4.42098 4.53874 4.60233 4.65901 4.81481 4.86422 4.95171 4.99323 4.99399 5.13236 5.16532 5.34863 5.43908 5.55049 5.67361 5.86843 5.92365 5.96654 6.11665 6.17440 6.49556 6.70475 6.95883 8.25372 8.43982 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.028750 B = 0.010269 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.680558 B = 2725.898828 C = 3676.660447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.197 4.197 3 C -0.079 4.079 4 C -0.226 4.226 5 C -0.078 4.078 6 C -0.191 4.191 7 C -0.099 4.099 8 C -0.136 4.136 9 C -0.082 4.082 10 C 0.140 3.860 11 N -0.530 5.530 12 C 0.217 3.783 13 C -0.440 4.440 14 H 0.104 0.896 15 C 0.018 3.982 16 N -0.733 5.733 17 Si 0.985 3.015 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.251 1.251 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 4.232 0.264 4.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.201 4.201 3 C -0.101 4.101 4 C -0.230 4.230 5 C -0.096 4.096 6 C -0.210 4.210 7 C -0.118 4.118 8 C -0.138 4.138 9 C -0.138 4.138 10 C 0.008 3.992 11 N -0.245 5.245 12 C 0.085 3.915 13 C -0.472 4.472 14 H 0.122 0.878 15 C -0.206 4.206 16 N -0.355 5.355 17 Si 0.805 3.195 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.174 1.174 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.158 0.842 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.115 3.300 0.268 3.313 hybrid contribution -0.608 0.023 0.032 0.610 sum -0.493 3.323 0.301 3.373 Atomic orbital electron populations 1.20564 0.89781 1.02281 1.01722 1.20986 0.98169 0.93987 1.06939 1.21090 0.92639 0.97751 0.98651 1.19947 0.94629 0.94781 1.13683 1.20953 0.94369 0.96432 0.97848 1.20702 0.94477 0.97622 1.08219 1.20730 0.99987 0.91580 0.99524 1.19710 0.91381 0.96736 1.05949 1.20356 0.98423 0.94252 1.00800 1.20748 0.94781 0.89182 0.94526 1.69222 1.05768 1.25708 1.23827 1.19158 0.89356 0.92930 0.90082 1.20285 0.95588 0.90152 1.41145 0.87805 1.27068 0.95897 1.04277 0.93320 1.70253 1.09851 1.28000 1.27375 0.85152 0.79236 0.76022 0.79119 1.18885 1.19697 1.17389 0.91718 0.91009 0.91791 0.84211 0.84743 0.84272 0.84659 0.93303 0.91099 0.92592 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 9.47 71.24 0.67 -2.49 16 2 C -0.20 -9.26 5.90 -19.65 -0.12 -9.38 16 3 C -0.08 -3.45 9.53 22.44 0.21 -3.23 16 4 C -0.23 -10.61 5.88 -19.99 -0.12 -10.72 16 5 C -0.08 -2.98 9.80 22.27 0.22 -2.76 16 6 C -0.19 -6.77 9.92 22.07 0.22 -6.55 16 7 C -0.10 -3.76 9.54 22.00 0.21 -3.55 16 8 C -0.14 -6.30 5.90 -19.72 -0.12 -6.41 16 9 C -0.08 -3.50 9.82 71.24 0.70 -2.80 16 10 C 0.14 7.39 6.73 41.78 0.28 7.67 16 11 N -0.53 -30.46 6.95 -178.56 -1.24 -31.70 16 12 C 0.22 11.90 6.53 40.43 0.26 12.16 16 13 C -0.44 -22.87 8.65 23.48 0.20 -22.67 16 14 H 0.10 4.87 5.83 -2.91 -0.02 4.85 16 15 C 0.02 0.89 5.49 85.33 0.47 1.36 16 16 N -0.73 -39.09 11.43 21.86 0.25 -38.84 16 17 Si 0.98 36.99 29.57 68.60 2.03 39.02 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 19 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 20 H -0.25 -8.91 7.11 99.48 0.71 -8.21 16 21 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.07 2.19 8.08 -2.38 -0.02 2.17 16 23 H 0.06 2.36 6.16 -2.39 -0.01 2.34 16 24 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 25 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.49 8.08 -2.39 -0.02 2.47 16 30 H 0.06 2.75 7.61 -2.39 -0.02 2.73 16 31 H 0.28 13.43 8.29 -92.71 -0.77 12.66 16 Total: -1.00 -64.16 265.00 5.27 -58.89 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.13 Total: 22.02 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 3.10 Total: -49.39 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.99 Total: -70.54 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -64.16 5.27 -58.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213209212.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.496 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds