Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99737 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00443 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99983 * 179.97438 * 11 10 9 14 14 H 1.09007 * 109.58947 * 40.30517 * 13 11 10 15 15 C 1.52975 * 109.59649 * 280.00074 * 13 11 10 16 16 N 1.46011 * 110.04375 * 189.93264 * 15 13 11 17 17 C 1.33714 * 122.92342 * 18.15893 * 16 15 13 18 18 O 1.21282 * 118.61829 * 178.31499 * 17 16 15 19 19 C 1.50253 * 122.75565 * 358.29213 * 17 16 15 20 20 N 1.46912 * 109.96751 * 17.23747 * 19 17 16 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 0.96997 * 119.99891 * 359.97438 * 10 9 7 25 25 H 1.08995 * 109.37813 * 310.10784 * 15 13 11 26 26 H 1.09005 * 109.37508 * 69.87454 * 15 13 11 27 27 H 0.97001 * 118.53797 * 198.14043 * 16 15 13 28 28 H 1.08997 * 109.38517 * 137.37815 * 19 17 16 29 29 H 1.08997 * 109.38387 * 257.17373 * 19 17 16 30 30 H 1.00903 * 110.99411 * 186.31070 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1131 -1.8996 0.0025 13 6 5.8274 -4.2423 0.0024 14 1 5.2114 -4.8480 -0.6623 15 6 5.7615 -4.8093 1.4217 16 7 6.4584 -6.0910 1.4814 17 6 7.3375 -6.4841 0.5537 18 8 7.8947 -7.5518 0.6969 19 6 7.6637 -5.6588 -0.6588 20 7 7.2265 -4.2713 -0.4536 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.3696 -3.3125 0.0010 25 1 6.2314 -4.1097 2.1129 26 1 4.7189 -4.9530 1.7056 27 1 6.2757 -6.6835 2.2273 28 1 8.7399 -5.6773 -0.8302 29 1 7.1517 -6.0735 -1.5271 30 1 7.3440 -3.7271 -1.2951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230819441.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -66.050834 kcal Electronic energy + Delta-G solvation = -15499.849567 eV Core-core repulsion = 12716.042743 eV Total energy + Delta-G solvation = -2783.806824 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.58249 -39.07703 -36.54823 -34.54990 -33.98308 -32.49241 -30.47001 -27.90500 -25.97951 -24.24378 -22.14081 -20.44668 -19.27473 -18.10275 -17.08959 -16.79301 -16.25786 -15.94683 -15.51764 -14.93854 -14.46369 -14.40748 -14.02464 -13.48398 -13.41067 -12.81299 -12.44064 -12.35311 -12.23077 -11.76795 -11.11806 -10.84695 -10.16723 -10.05445 -9.60393 -9.43337 -9.31244 -8.87988 -8.84414 -8.33281 -6.29672 -4.33143 2.39705 2.80046 3.13527 3.20814 3.27500 3.35260 3.41099 3.95865 4.25750 4.42329 4.53241 4.79696 4.98073 5.05716 5.08388 5.22336 5.24988 5.62112 6.27840 6.57571 6.68396 6.92435 6.94605 7.02257 7.03994 7.26324 7.97480 7.98836 8.35037 8.61580 8.73353 9.29479 10.82072 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.060321 B = 0.005467 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.069383 B = 5120.594126 C = 5376.940115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.700 5.700 11 C 0.505 3.495 12 O -0.533 6.533 13 C 0.049 3.951 14 H 0.072 0.928 15 C 0.125 3.875 16 N -0.714 5.714 17 C 0.525 3.475 18 O -0.558 6.558 19 C 0.041 3.959 20 N -0.659 5.659 21 H 0.269 0.731 22 H 0.022 0.978 23 H 0.028 0.972 24 H 0.397 0.603 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -9.384 -0.035 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.185 1.185 6 H -0.208 1.208 7 C -0.585 4.585 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.409 6.409 13 C -0.065 4.065 14 H 0.089 0.911 15 C 0.000 4.000 16 N -0.366 5.366 17 C 0.311 3.689 18 O -0.436 6.436 19 C -0.091 4.091 20 N -0.294 5.294 21 H 0.078 0.922 22 H 0.040 0.960 23 H 0.046 0.954 24 H 0.231 0.769 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.239 0.761 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.737 -8.917 0.486 13.965 hybrid contribution -0.699 0.200 -0.566 0.922 sum 10.038 -8.716 -0.080 13.294 Atomic orbital electron populations 1.69874 1.06244 1.27560 1.49061 1.24794 0.94785 0.99203 0.93749 0.86820 0.80572 0.83220 0.79092 1.19824 1.18464 1.20838 1.21058 0.88383 0.95271 1.53780 0.90209 1.19545 0.95376 0.78208 0.97013 1.46227 1.05321 1.11408 1.72000 1.19939 0.83441 0.89454 0.78486 1.90706 1.55368 1.45289 1.49576 1.21832 0.90958 0.96119 0.97568 0.91069 1.21414 0.97923 0.84756 0.95946 1.45500 1.43591 1.20553 1.26999 1.20145 0.78198 0.86112 0.84399 1.90768 1.51522 1.23840 1.77442 1.22141 1.03904 0.88012 0.95045 1.60637 1.18631 1.10159 1.40014 0.92155 0.95985 0.95426 0.76910 0.89861 0.89140 0.76099 0.86357 0.91065 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.55 -14.15 9.83 -34.44 -0.34 -14.49 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 C 0.22 5.01 4.50 -5.19 -0.02 4.99 16 10 N -0.70 -12.46 5.55 -61.47 -0.34 -12.80 16 11 C 0.50 8.33 6.95 -10.99 -0.08 8.26 16 12 O -0.53 -10.93 16.41 5.56 0.09 -10.84 16 13 C 0.05 0.59 2.91 -68.72 -0.20 0.39 16 14 H 0.07 0.72 8.08 -51.92 -0.42 0.30 16 15 C 0.12 1.31 6.69 -4.32 -0.03 1.28 16 16 N -0.71 -7.50 5.52 -61.07 -0.34 -7.83 16 17 C 0.52 6.51 7.81 -11.67 -0.09 6.42 16 18 O -0.56 -8.75 17.82 5.56 0.10 -8.65 16 19 C 0.04 0.42 6.68 -5.19 -0.03 0.38 16 20 N -0.66 -7.73 6.28 -109.26 -0.69 -8.42 16 21 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 23 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 24 H 0.40 6.07 8.32 -40.82 -0.34 5.73 16 25 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.40 3.63 8.84 -40.82 -0.36 3.27 16 28 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.36 4.10 8.54 -39.29 -0.34 3.76 16 LS Contribution 261.82 15.07 3.95 3.95 Total: -1.00 -32.57 261.82 -5.50 -38.07 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.49 Total: 6.13 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.89 Total: 9.27 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.59 Total: -53.80 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.19 Total: -19.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.57 -5.50 -38.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230819441.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.979 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds