Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99737 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00443 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99983 * 179.97438 * 11 10 9 14 14 H 1.09007 * 109.58947 * 40.30517 * 13 11 10 15 15 C 1.52975 * 109.59649 * 280.00074 * 13 11 10 16 16 N 1.46011 * 110.04375 * 189.93264 * 15 13 11 17 17 C 1.33714 * 122.92342 * 18.15893 * 16 15 13 18 18 O 1.21282 * 118.61829 * 178.31499 * 17 16 15 19 19 C 1.50253 * 122.75565 * 358.29213 * 17 16 15 20 20 N 1.46912 * 109.96751 * 17.23747 * 19 17 16 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 23 23 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 24 24 H 0.96997 * 119.99891 * 359.97438 * 10 9 7 25 25 H 1.08995 * 109.37813 * 310.10784 * 15 13 11 26 26 H 1.09005 * 109.37508 * 69.87454 * 15 13 11 27 27 H 0.97001 * 118.53797 * 198.14043 * 16 15 13 28 28 H 1.08997 * 109.38517 * 137.37815 * 19 17 16 29 29 H 1.08997 * 109.38387 * 257.17373 * 19 17 16 30 30 H 1.00903 * 110.99411 * 186.31070 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1131 -1.8996 0.0025 13 6 5.8274 -4.2423 0.0024 14 1 5.2114 -4.8480 -0.6623 15 6 5.7615 -4.8093 1.4217 16 7 6.4584 -6.0910 1.4814 17 6 7.3375 -6.4841 0.5537 18 8 7.8947 -7.5518 0.6969 19 6 7.6637 -5.6588 -0.6588 20 7 7.2265 -4.2713 -0.4536 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6803 -0.8889 23 1 3.8746 -0.6799 0.8911 24 1 3.3696 -3.3125 0.0010 25 1 6.2314 -4.1097 2.1129 26 1 4.7189 -4.9530 1.7056 27 1 6.2757 -6.6835 2.2273 28 1 8.7399 -5.6773 -0.8302 29 1 7.1517 -6.0735 -1.5271 30 1 7.3440 -3.7271 -1.2951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230819441.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -95.753937 kcal Electronic energy + Delta-G solvation = -15501.137590 eV Core-core repulsion = 12716.042743 eV Total energy + Delta-G solvation = -2785.094847 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.61048 -40.36319 -37.62890 -36.17445 -34.92974 -34.39969 -31.62794 -29.59862 -26.84384 -25.46880 -23.77881 -21.79837 -20.36883 -19.35570 -18.53461 -17.82363 -17.59822 -17.05133 -16.79590 -16.33669 -15.91756 -15.51342 -15.33035 -14.82152 -14.52842 -14.36518 -13.94049 -13.82357 -13.24836 -13.01273 -12.80566 -12.64885 -11.91530 -11.62741 -11.15900 -10.89652 -10.85309 -10.22859 -9.95517 -9.70743 -8.37411 -6.44303 1.35398 1.39044 1.45128 1.49851 1.56441 2.12987 2.25631 2.30587 2.98773 2.99587 3.48108 3.59298 3.81955 3.96025 4.24243 4.42659 4.49063 4.74064 4.81497 5.06386 5.28025 5.42803 5.48151 5.76409 6.04581 6.10723 6.14086 6.57369 6.81297 7.07459 7.17298 7.36014 8.77093 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.060321 B = 0.005467 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.069383 B = 5120.594126 C = 5376.940115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.572 6.572 13 C 0.060 3.940 14 H 0.100 0.900 15 C 0.127 3.873 16 N -0.704 5.704 17 C 0.520 3.480 18 O -0.596 6.596 19 C 0.047 3.953 20 N -0.671 5.671 21 H 0.271 0.729 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.411 0.589 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.410 0.590 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.559 -9.807 -0.251 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.107 3.893 10 N -0.348 5.348 11 C 0.296 3.704 12 O -0.451 6.451 13 C -0.054 4.054 14 H 0.117 0.883 15 C 0.002 3.998 16 N -0.356 5.356 17 C 0.307 3.693 18 O -0.477 6.477 19 C -0.085 4.085 20 N -0.308 5.308 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.247 0.753 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.248 0.752 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.525 -9.366 0.279 14.853 hybrid contribution -0.952 0.278 -0.489 1.106 sum 10.573 -9.088 -0.210 13.943 Atomic orbital electron populations 1.69981 1.07758 1.28546 1.50837 1.25578 0.95447 1.02622 0.93701 0.85893 0.79365 0.79480 0.79357 1.19148 1.18140 1.20293 1.21299 0.90017 0.94553 1.52396 0.91996 1.19132 0.93255 0.80875 0.96012 1.46008 1.06426 1.09925 1.72460 1.20577 0.82257 0.91049 0.76563 1.90692 1.56169 1.47198 1.51037 1.21734 0.91593 0.92893 0.99169 0.88292 1.21448 0.99258 0.84364 0.94746 1.45437 1.42816 1.20441 1.26871 1.20540 0.77860 0.85810 0.85058 1.90757 1.52980 1.25536 1.78407 1.22166 1.04811 0.86728 0.94757 1.60639 1.18343 1.11237 1.40554 0.91951 0.96791 0.96570 0.75325 0.90917 0.86605 0.75208 0.85347 0.88683 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.72 13.96 21.45 0.30 -53.42 16 2 C 0.03 1.44 5.47 84.65 0.46 1.91 16 3 Si 0.94 41.99 27.47 68.60 1.88 43.87 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.26 -11.33 6.54 99.48 0.65 -10.68 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -28.01 9.83 25.60 0.25 -27.76 16 8 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 9 C 0.23 10.28 4.50 85.63 0.38 10.66 16 10 N -0.70 -23.66 5.55 -466.79 -2.59 -26.25 16 11 C 0.51 15.89 6.95 87.66 0.61 16.50 16 12 O -0.57 -22.76 16.41 -3.02 -0.05 -22.81 16 13 C 0.06 1.26 2.91 44.11 0.13 1.39 16 14 H 0.10 1.61 8.08 -2.38 -0.02 1.59 16 15 C 0.13 2.32 6.69 86.46 0.58 2.90 16 16 N -0.70 -13.07 5.52 -466.10 -2.57 -15.64 16 17 C 0.52 11.75 7.81 87.68 0.69 12.44 16 18 O -0.60 -17.86 17.82 -3.04 -0.05 -17.92 16 19 C 0.05 0.82 6.68 85.41 0.57 1.39 16 20 N -0.67 -14.07 6.28 -499.58 -3.14 -17.21 16 21 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 22 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 23 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 24 H 0.41 11.72 8.32 -92.71 -0.77 10.95 16 25 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 26 H 0.12 1.57 8.14 -2.38 -0.02 1.56 16 27 H 0.41 6.51 8.84 -92.71 -0.82 5.69 16 28 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.37 7.42 8.54 -89.69 -0.77 6.65 16 Total: -1.00 -69.42 261.82 -3.76 -73.18 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -1.22 Total: 16.76 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 3.67 Total: 19.42 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -8.00 Total: -112.51 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.10 Total: -40.73 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Total: -69.42 -3.76 -73.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230819441.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.575 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds