Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47179 * 270.00262 * 3 2 1 5 5 H 1.48495 * 109.47204 * 30.00104 * 3 2 1 6 6 H 1.48502 * 109.47038 * 150.00133 * 3 2 1 7 7 C 1.38809 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00459 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99933 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.39370 * 119.51084 * 270.28890 * 11 10 9 13 13 C 1.36098 * 120.99091 * 180.28202 * 12 11 10 14 14 C 1.40536 * 119.65063 * 359.71066 * 13 12 11 15 15 C 1.40540 * 121.28217 * 180.02562 * 14 13 12 16 16 C 1.36091 * 119.65665 * 180.02562 * 15 14 13 17 17 C 1.39376 * 120.98533 * 359.95297 * 16 15 14 18 18 C 1.36089 * 120.99181 * 0.02562 * 17 16 15 19 19 C 1.40540 * 119.65387 * 0.02562 * 18 17 16 20 20 C 1.36095 * 119.49925 * 90.00192 * 11 10 9 21 21 H 0.97000 * 119.99844 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00375 * 359.97438 * 9 7 2 23 23 H 1.09006 * 109.46805 * 59.99795 * 10 9 7 24 24 H 1.09000 * 109.47076 * 300.00315 * 10 9 7 25 25 H 1.07998 * 119.50525 * 359.97438 * 12 11 10 26 26 H 1.07997 * 120.17524 * 179.73800 * 13 12 11 27 27 H 1.08002 * 120.17303 * 0.02639 * 15 14 13 28 28 H 1.07998 * 119.50902 * 179.97438 * 16 15 14 29 29 H 1.08007 * 119.50474 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.17251 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.17715 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 0.0001 12 6 0.6285 -5.3197 1.2133 13 6 -0.2514 -6.3574 1.2490 14 6 -0.7195 -6.9138 0.0464 15 6 -1.6288 -7.9854 0.0433 16 6 -2.0601 -8.4991 -1.1408 17 6 -1.6143 -7.9778 -2.3541 18 6 -0.7344 -6.9402 -2.3899 19 6 -0.2658 -6.3841 -1.1873 20 6 0.6429 -5.3118 -1.1841 21 1 -0.4850 0.8401 0.0004 22 1 0.3557 -2.3881 0.0002 23 1 2.6848 -3.7145 0.8895 24 1 2.6848 -3.7145 -0.8905 25 1 0.9869 -4.8942 2.1389 26 1 -0.5884 -6.7509 2.1966 27 1 -1.9834 -8.3991 0.9758 28 1 -2.7585 -9.3229 -1.1404 29 1 -1.9725 -8.4036 -3.2798 30 1 -0.3980 -6.5462 -3.3375 31 1 0.9972 -4.8979 -2.1166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258909434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = 48.366219 kcal Electronic energy + Delta-G solvation = -14319.731345 eV Core-core repulsion = 11951.735280 eV Total energy + Delta-G solvation = -2367.996065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12483 -36.81653 -34.31092 -32.56260 -31.44233 -29.67220 -28.92013 -25.54943 -23.17801 -22.82025 -21.71808 -21.11792 -17.41241 -16.98109 -16.59977 -15.68006 -14.64574 -14.51301 -14.08700 -13.56307 -13.47598 -13.18206 -13.06151 -12.89766 -12.17328 -11.96346 -11.45587 -11.17645 -10.83408 -10.80839 -10.61933 -10.48491 -10.04720 -9.81143 -9.67503 -8.89211 -8.28711 -7.64725 -6.93077 -5.75579 -3.05450 0.76019 1.23433 2.29386 3.21040 3.44298 3.49275 3.51199 4.34029 4.62792 4.77623 4.96567 5.05394 5.22221 5.27237 5.43788 5.51222 5.61631 5.64546 5.74054 5.94759 6.14749 6.19341 6.29682 6.33679 6.45527 6.55944 6.59733 6.63229 6.80983 7.03611 7.14111 7.28195 7.69677 8.42176 9.53679 10.10060 10.46018 11.46975 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049010 B = 0.005346 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.172924 B = 5235.938285 C = 5394.676390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.185 3.815 11 C -0.072 4.072 12 C -0.090 4.090 13 C -0.119 4.119 14 C -0.055 4.055 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.101 4.101 19 C -0.051 4.051 20 C -0.096 4.096 21 H 0.255 0.745 22 H 0.386 0.614 23 H 0.029 0.971 24 H 0.028 0.972 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -16.613 -1.315 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.058 3.942 11 C -0.072 4.072 12 C -0.108 4.108 13 C -0.137 4.137 14 C -0.055 4.055 15 C -0.125 4.125 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.051 4.051 20 C -0.114 4.114 21 H 0.065 0.935 22 H 0.219 0.781 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.966 -16.475 -1.304 16.643 hybrid contribution 0.044 0.991 -0.002 0.992 sum -1.922 -15.484 -1.306 15.657 Atomic orbital electron populations 1.69682 1.05154 1.25693 1.57503 1.24760 0.95520 0.97704 1.02882 0.86169 0.78633 0.83720 0.77537 1.21677 1.21748 1.20705 1.19251 0.91075 0.83978 1.43011 0.91047 1.42357 1.05956 0.99310 1.89505 1.19728 0.91838 0.83907 0.98756 1.20028 0.97849 0.96669 0.92678 1.20882 0.96533 0.95323 0.98107 1.20950 0.98552 0.97487 0.96751 1.18079 0.97725 0.96559 0.93102 1.20984 0.97227 0.96035 0.98234 1.20755 1.00617 1.00421 0.92595 1.20763 0.98504 0.97443 0.97814 1.21049 0.97389 0.96313 0.97189 1.18124 0.97662 0.96457 0.92848 1.20976 0.96761 0.95186 0.98514 0.93467 0.78057 0.95352 0.95375 0.85810 0.85890 0.85987 0.86479 0.86410 0.85745 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.97 5.59 -61.08 -0.34 -19.31 16 10 C 0.18 3.87 6.35 -5.19 -0.03 3.83 16 11 C -0.07 -1.31 5.21 -104.97 -0.55 -1.86 16 12 C -0.09 -1.50 9.59 -39.93 -0.38 -1.88 16 13 C -0.12 -1.76 9.77 -39.48 -0.39 -2.15 16 14 C -0.05 -0.82 5.74 -106.84 -0.61 -1.44 16 15 C -0.11 -1.34 9.77 -39.49 -0.39 -1.73 16 16 C -0.13 -1.44 9.95 -39.93 -0.40 -1.84 16 17 C -0.13 -1.50 9.95 -39.93 -0.40 -1.90 16 18 C -0.10 -1.37 9.77 -39.49 -0.39 -1.76 16 19 C -0.05 -0.81 5.74 -106.83 -0.61 -1.42 16 20 C -0.10 -1.64 9.37 -39.48 -0.37 -2.01 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.39 10.76 7.66 -40.82 -0.31 10.45 16 23 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 24 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 25 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 272.58 15.07 4.11 4.11 Total: -1.00 -31.46 272.58 -8.95 -40.41 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.66 Total: 6.88 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -4.76 Total: -21.63 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.38 Total: -47.29 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.46 -8.95 -40.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258909434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.776 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds