Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47179 * 270.00262 * 3 2 1 5 5 H 1.48495 * 109.47204 * 30.00104 * 3 2 1 6 6 H 1.48502 * 109.47038 * 150.00133 * 3 2 1 7 7 C 1.38809 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00459 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99933 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46958 * 179.97438 * 10 9 7 12 12 C 1.39370 * 119.51084 * 270.28890 * 11 10 9 13 13 C 1.36098 * 120.99091 * 180.28202 * 12 11 10 14 14 C 1.40536 * 119.65063 * 359.71066 * 13 12 11 15 15 C 1.40540 * 121.28217 * 180.02562 * 14 13 12 16 16 C 1.36091 * 119.65665 * 180.02562 * 15 14 13 17 17 C 1.39376 * 120.98533 * 359.95297 * 16 15 14 18 18 C 1.36089 * 120.99181 * 0.02562 * 17 16 15 19 19 C 1.40540 * 119.65387 * 0.02562 * 18 17 16 20 20 C 1.36095 * 119.49925 * 90.00192 * 11 10 9 21 21 H 0.97000 * 119.99844 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00375 * 359.97438 * 9 7 2 23 23 H 1.09006 * 109.46805 * 59.99795 * 10 9 7 24 24 H 1.09000 * 109.47076 * 300.00315 * 10 9 7 25 25 H 1.07998 * 119.50525 * 359.97438 * 12 11 10 26 26 H 1.07997 * 120.17524 * 179.73800 * 13 12 11 27 27 H 1.08002 * 120.17303 * 0.02639 * 15 14 13 28 28 H 1.07998 * 119.50902 * 179.97438 * 16 15 14 29 29 H 1.08007 * 119.50474 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.17251 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.17715 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 0.0001 12 6 0.6285 -5.3197 1.2133 13 6 -0.2514 -6.3574 1.2490 14 6 -0.7195 -6.9138 0.0464 15 6 -1.6288 -7.9854 0.0433 16 6 -2.0601 -8.4991 -1.1408 17 6 -1.6143 -7.9778 -2.3541 18 6 -0.7344 -6.9402 -2.3899 19 6 -0.2658 -6.3841 -1.1873 20 6 0.6429 -5.3118 -1.1841 21 1 -0.4850 0.8401 0.0004 22 1 0.3557 -2.3881 0.0002 23 1 2.6848 -3.7145 0.8895 24 1 2.6848 -3.7145 -0.8905 25 1 0.9869 -4.8942 2.1389 26 1 -0.5884 -6.7509 2.1966 27 1 -1.9834 -8.3991 0.9758 28 1 -2.7585 -9.3229 -1.1404 29 1 -1.9725 -8.4036 -3.2798 30 1 -0.3980 -6.5462 -3.3375 31 1 0.9972 -4.8979 -2.1166 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258909434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = 30.509173 kcal Electronic energy + Delta-G solvation = -14320.505685 eV Core-core repulsion = 11951.735280 eV Total energy + Delta-G solvation = -2368.770404 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24414 -38.08433 -36.10186 -33.86444 -33.11060 -31.09259 -30.15999 -27.25398 -24.84457 -24.11578 -22.80603 -22.50971 -19.38231 -18.17512 -17.71433 -17.01270 -16.56481 -15.61249 -15.46976 -15.26738 -14.92325 -14.50020 -14.38611 -14.10298 -13.65258 -13.35983 -13.05261 -12.78164 -12.51834 -12.18075 -12.14373 -11.83814 -11.72181 -11.62179 -11.00042 -10.85183 -9.44642 -9.05564 -8.76564 -7.96797 -5.27872 -0.33720 0.10133 1.17029 1.46807 1.49321 1.57984 2.09238 2.56412 3.21662 3.36152 3.71306 3.88801 4.01334 4.10903 4.21148 4.23842 4.35929 4.46744 4.52128 4.61655 4.83314 4.87960 4.95341 5.07523 5.22188 5.37339 5.38255 5.45941 5.60889 5.68523 5.80053 5.97074 6.15656 6.23528 7.29962 8.02103 8.28347 9.26737 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.049010 B = 0.005346 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.172924 B = 5235.938285 C = 5394.676390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.074 4.074 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.250 4.250 8 H 0.079 0.921 9 N -0.739 5.739 10 C 0.187 3.813 11 C -0.093 4.093 12 C -0.114 4.114 13 C -0.108 4.108 14 C -0.073 4.073 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.071 4.071 20 C -0.106 4.106 21 H 0.252 0.748 22 H 0.372 0.628 23 H 0.032 0.968 24 H 0.029 0.971 25 H 0.124 0.876 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -18.468 -1.431 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.382 5.382 10 C 0.062 3.938 11 C -0.094 4.094 12 C -0.133 4.133 13 C -0.126 4.126 14 C -0.073 4.073 15 C -0.130 4.130 16 C -0.138 4.138 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.071 4.071 20 C -0.125 4.125 21 H 0.061 0.939 22 H 0.204 0.796 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.142 0.858 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.588 -18.365 -1.421 18.601 hybrid contribution 0.176 1.360 -0.031 1.372 sum -2.412 -17.005 -1.453 17.236 Atomic orbital electron populations 1.69853 1.06835 1.26225 1.59268 1.25640 0.96403 1.01294 1.03321 0.85065 0.77693 0.78987 0.77536 1.21232 1.22054 1.19186 1.19696 0.91649 0.85103 1.41722 0.90310 1.42552 1.05502 1.00625 1.89478 1.19772 0.92336 0.83138 0.98600 1.19834 0.98782 0.96701 0.94044 1.20920 0.98148 0.96783 0.97416 1.21284 0.96951 0.96158 0.98193 1.18431 0.98528 0.97588 0.92761 1.21336 0.96387 0.95102 1.00183 1.21244 1.00110 1.00603 0.91872 1.21215 0.96750 0.96016 0.99571 1.21267 0.98519 0.97422 0.96860 1.18352 0.97821 0.96420 0.94461 1.21035 0.97472 0.96050 0.97935 0.93907 0.79597 0.94995 0.95262 0.85769 0.82813 0.83166 0.82887 0.83287 0.84766 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 2 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.74 -39.85 5.59 -347.16 -1.94 -41.79 16 10 C 0.19 8.14 6.35 85.63 0.54 8.69 16 11 C -0.09 -3.54 5.21 -20.09 -0.10 -3.65 16 12 C -0.11 -3.86 9.59 22.04 0.21 -3.65 16 13 C -0.11 -3.08 9.77 22.33 0.22 -2.86 16 14 C -0.07 -2.09 5.74 -21.30 -0.12 -2.21 16 15 C -0.11 -2.44 9.77 22.33 0.22 -2.22 16 16 C -0.12 -2.25 9.95 22.04 0.22 -2.03 16 17 C -0.12 -2.38 9.95 22.04 0.22 -2.16 16 18 C -0.12 -3.15 9.77 22.33 0.22 -2.93 16 19 C -0.07 -2.21 5.74 -21.29 -0.12 -2.34 16 20 C -0.11 -3.77 9.37 22.33 0.21 -3.56 16 21 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 22 H 0.37 21.68 7.66 -92.71 -0.71 20.97 16 23 H 0.03 1.36 8.08 -2.38 -0.02 1.34 16 24 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 25 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 26 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 27 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -68.53 272.58 3.80 -64.74 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.41 Total: 25.63 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.01 Total: -36.47 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -1.66 Total: -102.78 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -68.53 3.80 -64.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258909434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.247 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds