Wall clock time and date at job start Mon Mar 30 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48494 * 109.47204 * 275.43669 * 3 2 1 5 5 H 1.48506 * 109.46561 * 35.43509 * 3 2 1 6 6 H 1.48500 * 109.46910 * 155.43167 * 3 2 1 7 7 C 1.39867 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99794 * 342.08969 * 7 2 1 9 9 C 1.41320 * 120.00071 * 161.81591 * 7 2 1 10 10 C 1.40701 * 119.32763 * 149.83475 * 9 7 2 11 11 C 1.39072 * 119.03533 * 180.02562 * 10 9 7 12 12 C 1.46492 * 137.40133 * 180.09407 * 11 10 9 13 13 C 1.35224 * 107.30534 * 180.09539 * 12 11 10 14 14 N 1.35632 * 110.28633 * 0.02562 * 13 12 11 15 15 C 1.38197 * 108.58963 * 359.81083 * 14 13 12 16 16 C 1.39835 * 127.57650 * 180.20407 * 15 14 13 17 17 C 1.35117 * 118.90132 * 179.97438 * 16 15 14 18 18 C 1.50685 * 115.54328 * 0.32452 * 16 15 14 19 19 C 1.53181 * 109.43916 * 331.62055 * 18 16 15 20 20 C 1.46884 * 132.42630 * 179.63589 * 14 13 12 21 21 H 0.97002 * 120.00100 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.48892 * 0.02640 * 10 9 7 23 23 H 1.07998 * 126.34688 * 0.07611 * 12 11 10 24 24 H 1.08000 * 124.85372 * 180.02562 * 13 12 11 25 25 H 1.08004 * 120.24269 * 180.19174 * 17 16 15 26 26 H 1.08995 * 109.47692 * 211.63001 * 18 16 15 27 27 H 1.09005 * 109.48298 * 91.61722 * 18 16 15 28 28 H 1.08995 * 108.88360 * 296.50294 * 19 18 16 29 29 H 1.09002 * 108.80016 * 178.00163 * 19 18 16 30 30 H 1.08995 * 109.63548 * 326.84138 * 20 14 13 31 31 H 1.09008 * 109.63105 * 87.42800 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3755 2.1128 -1.3937 5 1 1.5024 2.6168 0.8118 6 1 3.5931 1.4098 0.5821 7 6 2.0082 -1.2113 -0.0005 8 1 1.5074 -2.1240 0.2867 9 6 3.3685 -1.2417 -0.3825 10 6 4.2213 -2.2080 0.1819 11 6 5.5590 -2.2321 -0.1979 12 6 6.7538 -3.0211 0.1117 13 6 7.7718 -2.5132 -0.6193 14 7 7.3374 -1.4696 -1.3689 15 6 5.9891 -1.2853 -1.1283 16 6 5.1455 -0.3242 -1.6939 17 6 3.8443 -0.3023 -1.3305 18 6 5.7944 0.6079 -2.6843 19 6 7.2787 0.7650 -2.3395 20 6 8.0201 -0.5770 -2.3148 21 1 -0.4850 0.8401 0.0004 22 1 3.8428 -2.9207 0.8997 23 1 6.8111 -3.8538 0.7969 24 1 8.7856 -2.8853 -0.6078 25 1 3.1729 0.4288 -1.7561 26 1 5.3062 1.5814 -2.6409 27 1 5.6962 0.1966 -3.6889 28 1 7.3655 1.2341 -1.3595 29 1 7.7452 1.4121 -3.0823 30 1 9.0497 -0.4207 -1.9930 31 1 8.0081 -1.0204 -3.3106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259421932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:03 Heat of formation + Delta-G solvation = 50.464466 kcal Electronic energy + Delta-G solvation = -15291.190354 eV Core-core repulsion = 12923.285276 eV Total energy + Delta-G solvation = -2367.905078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68031 -36.35896 -35.36817 -33.16047 -30.37166 -29.40438 -28.33087 -25.62666 -24.24462 -22.16743 -20.83521 -20.09054 -18.52090 -17.17283 -16.12311 -15.35059 -15.23933 -14.67193 -13.95469 -13.55177 -13.25854 -12.97320 -12.82509 -12.27541 -12.20501 -11.84438 -11.50656 -11.27709 -10.99252 -10.88273 -10.62868 -10.20070 -9.97957 -9.81170 -9.39603 -8.98907 -8.40461 -7.14272 -6.79378 -6.66026 -4.23702 2.20924 2.81085 3.14762 3.24178 3.37723 3.54989 3.57423 4.07189 4.59024 4.86265 4.98400 5.10623 5.39014 5.46874 5.53946 5.61779 5.81568 5.90419 5.97998 6.14088 6.31090 6.34530 6.49099 6.59321 6.79581 7.05995 7.16822 7.34982 7.45813 7.83633 7.87756 8.01082 8.23629 8.28786 8.49071 8.80850 8.96623 10.25581 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.010435 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.331762 B = 2682.647949 C = 3320.012405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.084 3.916 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.454 4.454 8 H 0.089 0.911 9 C 0.080 3.920 10 C -0.200 4.200 11 C -0.047 4.047 12 C -0.234 4.234 13 C 0.047 3.953 14 N -0.494 5.494 15 C -0.012 4.012 16 C -0.074 4.074 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.129 4.129 20 C 0.125 3.875 21 H 0.281 0.719 22 H 0.101 0.899 23 H 0.131 0.869 24 H 0.148 0.852 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.896 2.077 -4.123 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.107 0.893 9 C 0.077 3.923 10 C -0.221 4.221 11 C -0.050 4.050 12 C -0.262 4.262 13 C -0.080 4.080 14 N -0.180 5.180 15 C -0.114 4.114 16 C -0.076 4.076 17 C -0.190 4.190 18 C -0.112 4.112 19 C -0.166 4.166 20 C 0.003 3.997 21 H 0.091 0.909 22 H 0.119 0.881 23 H 0.149 0.851 24 H 0.166 0.834 25 H 0.125 0.875 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.878 2.361 -4.334 13.791 hybrid contribution 0.288 0.734 -0.021 0.789 sum 13.166 3.095 -4.356 14.209 Atomic orbital electron populations 1.69730 1.07894 1.29693 1.37358 1.26048 0.94622 1.01259 0.91355 0.86477 0.81493 0.80485 0.78549 1.19865 1.21856 1.16901 1.19348 0.93065 0.95955 1.40049 0.89333 1.17665 0.93211 0.91139 0.90313 1.20321 0.90258 1.05572 1.05900 1.18531 0.93634 0.95558 0.97310 1.21611 0.91946 1.04918 1.07731 1.21237 0.98557 0.91600 0.96610 1.43713 1.08406 1.27880 1.38025 1.18243 0.83980 1.03036 1.06116 1.18261 0.93305 0.96551 0.99533 1.20408 0.93744 1.03185 1.01679 1.20364 0.93725 0.99047 0.98108 1.21754 0.96228 0.95913 1.02749 1.21623 0.95863 0.89857 0.92308 0.90859 0.88052 0.85081 0.83433 0.87501 0.91102 0.91312 0.91334 0.90563 0.90603 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.65 13.93 55.54 0.77 -21.88 16 2 C 0.08 2.27 5.39 -17.34 -0.09 2.17 16 3 Si 0.90 21.24 24.49 -169.99 -4.16 17.07 16 4 H -0.27 -6.10 6.69 56.52 0.38 -5.72 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.25 -5.97 6.88 56.52 0.39 -5.58 16 7 C -0.45 -12.77 9.51 -37.80 -0.36 -13.13 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.08 2.12 5.11 -106.48 -0.54 1.57 16 10 C -0.20 -5.04 9.85 -38.34 -0.38 -5.42 16 11 C -0.05 -1.09 6.54 -105.78 -0.69 -1.79 16 12 C -0.23 -4.56 11.10 -37.33 -0.41 -4.98 16 13 C 0.05 0.80 11.59 -16.95 -0.20 0.60 16 14 N -0.49 -9.02 3.21 -114.00 -0.37 -9.39 16 15 C -0.01 -0.27 6.25 -83.91 -0.52 -0.79 16 16 C -0.07 -1.65 5.74 -105.14 -0.60 -2.25 16 17 C -0.17 -4.21 6.93 -39.37 -0.27 -4.48 16 18 C -0.08 -1.28 6.13 -27.80 -0.17 -1.45 16 19 C -0.13 -1.78 5.75 -26.46 -0.15 -1.93 16 20 C 0.13 1.72 7.20 -3.66 -0.03 1.69 16 21 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 22 H 0.10 2.46 8.06 -52.49 -0.42 2.04 16 23 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 24 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 25 H 0.11 2.59 4.74 -52.48 -0.25 2.35 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 253.52 15.07 3.82 3.82 Total: -1.00 -30.39 253.52 -8.01 -38.40 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.65 Total: 2.16 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -4.43 Total: -30.18 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.41 Total: -31.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.16 Total: 17.07 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.39 -8.01 -38.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259421932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.861 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds