Wall clock time and date at job start Mon Mar 30 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48494 * 109.47204 * 275.43669 * 3 2 1 5 5 H 1.48506 * 109.46561 * 35.43509 * 3 2 1 6 6 H 1.48500 * 109.46910 * 155.43167 * 3 2 1 7 7 C 1.39867 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99794 * 342.08969 * 7 2 1 9 9 C 1.41320 * 120.00071 * 161.81591 * 7 2 1 10 10 C 1.40701 * 119.32763 * 149.83475 * 9 7 2 11 11 C 1.39072 * 119.03533 * 180.02562 * 10 9 7 12 12 C 1.46492 * 137.40133 * 180.09407 * 11 10 9 13 13 C 1.35224 * 107.30534 * 180.09539 * 12 11 10 14 14 N 1.35632 * 110.28633 * 0.02562 * 13 12 11 15 15 C 1.38197 * 108.58963 * 359.81083 * 14 13 12 16 16 C 1.39835 * 127.57650 * 180.20407 * 15 14 13 17 17 C 1.35117 * 118.90132 * 179.97438 * 16 15 14 18 18 C 1.50685 * 115.54328 * 0.32452 * 16 15 14 19 19 C 1.53181 * 109.43916 * 331.62055 * 18 16 15 20 20 C 1.46884 * 132.42630 * 179.63589 * 14 13 12 21 21 H 0.97002 * 120.00100 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.48892 * 0.02640 * 10 9 7 23 23 H 1.07998 * 126.34688 * 0.07611 * 12 11 10 24 24 H 1.08000 * 124.85372 * 180.02562 * 13 12 11 25 25 H 1.08004 * 120.24269 * 180.19174 * 17 16 15 26 26 H 1.08995 * 109.47692 * 211.63001 * 18 16 15 27 27 H 1.09005 * 109.48298 * 91.61722 * 18 16 15 28 28 H 1.08995 * 108.88360 * 296.50294 * 19 18 16 29 29 H 1.09002 * 108.80016 * 178.00163 * 19 18 16 30 30 H 1.08995 * 109.63548 * 326.84138 * 20 14 13 31 31 H 1.09008 * 109.63105 * 87.42800 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3755 2.1128 -1.3937 5 1 1.5024 2.6168 0.8118 6 1 3.5931 1.4098 0.5821 7 6 2.0082 -1.2113 -0.0005 8 1 1.5074 -2.1240 0.2867 9 6 3.3685 -1.2417 -0.3825 10 6 4.2213 -2.2080 0.1819 11 6 5.5590 -2.2321 -0.1979 12 6 6.7538 -3.0211 0.1117 13 6 7.7718 -2.5132 -0.6193 14 7 7.3374 -1.4696 -1.3689 15 6 5.9891 -1.2853 -1.1283 16 6 5.1455 -0.3242 -1.6939 17 6 3.8443 -0.3023 -1.3305 18 6 5.7944 0.6079 -2.6843 19 6 7.2787 0.7650 -2.3395 20 6 8.0201 -0.5770 -2.3148 21 1 -0.4850 0.8401 0.0004 22 1 3.8428 -2.9207 0.8997 23 1 6.8111 -3.8538 0.7969 24 1 8.7856 -2.8853 -0.6078 25 1 3.1729 0.4288 -1.7561 26 1 5.3062 1.5814 -2.6409 27 1 5.6962 0.1966 -3.6889 28 1 7.3655 1.2341 -1.3595 29 1 7.7452 1.4121 -3.0823 30 1 9.0497 -0.4207 -1.9930 31 1 8.0081 -1.0204 -3.3106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259421932.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:03 Heat of formation + Delta-G solvation = 32.217867 kcal Electronic energy + Delta-G solvation = -15291.981586 eV Core-core repulsion = 12923.285276 eV Total energy + Delta-G solvation = -2368.696310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.23108 -38.12529 -36.71167 -35.11142 -32.06435 -30.95546 -29.92051 -27.30500 -25.88390 -23.58604 -22.51266 -21.72412 -20.00653 -19.07255 -17.64878 -17.18202 -16.74963 -16.16857 -15.49890 -14.96492 -14.78801 -14.62795 -14.40134 -14.01743 -13.66053 -13.54671 -13.13430 -12.88849 -12.55265 -12.24198 -12.10327 -11.99105 -11.70302 -11.59240 -11.19131 -10.90869 -10.03809 -8.93626 -8.82912 -8.30613 -6.32927 0.48687 0.96329 1.23215 1.38341 1.48380 2.01538 2.15333 2.23806 2.65639 3.50428 3.74610 3.85404 3.93919 4.17294 4.24830 4.42319 4.45689 4.64550 4.69814 4.79503 4.86694 4.92622 5.02238 5.07337 5.21475 5.27764 5.35436 5.62080 5.67093 5.91960 6.12296 6.19522 6.34111 6.47870 6.83965 6.85019 6.92421 8.27879 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.010435 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.331762 B = 2682.647949 C = 3320.012405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.045 3.955 3 Si 0.965 3.035 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.493 4.493 8 H 0.047 0.953 9 C 0.059 3.941 10 C -0.225 4.225 11 C -0.077 4.077 12 C -0.269 4.269 13 C 0.081 3.919 14 N -0.490 5.490 15 C -0.022 4.022 16 C -0.071 4.071 17 C -0.196 4.196 18 C -0.081 4.081 19 C -0.125 4.125 20 C 0.114 3.886 21 H 0.291 0.709 22 H 0.087 0.913 23 H 0.148 0.852 24 H 0.207 0.793 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.688 3.683 -6.062 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.174 1.174 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.056 3.944 10 C -0.246 4.246 11 C -0.081 4.081 12 C -0.295 4.295 13 C -0.047 4.047 14 N -0.174 5.174 15 C -0.125 4.125 16 C -0.073 4.073 17 C -0.216 4.216 18 C -0.118 4.118 19 C -0.163 4.163 20 C -0.005 4.005 21 H 0.101 0.899 22 H 0.106 0.894 23 H 0.165 0.835 24 H 0.223 0.777 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.686 3.969 -6.296 19.188 hybrid contribution -0.935 0.064 0.532 1.078 sum 16.751 4.033 -5.764 18.168 Atomic orbital electron populations 1.69764 1.09045 1.31033 1.39244 1.26757 0.95324 1.03970 0.90668 0.85531 0.79226 0.76701 0.79727 1.17437 1.20275 1.18584 1.19331 0.94550 0.95358 1.43197 0.93522 1.17785 0.92611 0.92606 0.91351 1.20410 0.91966 1.05660 1.06586 1.18983 0.93749 0.97284 0.98124 1.21918 0.91152 1.06345 1.10128 1.22041 1.00071 0.89340 0.93251 1.44217 1.06833 1.28273 1.38085 1.18456 0.86335 1.02336 1.05385 1.18841 0.92374 0.96811 0.99267 1.20397 0.95334 1.03442 1.02385 1.20561 0.95822 0.98107 0.97265 1.21803 0.93989 0.96924 1.03577 1.22138 0.97313 0.88716 0.92333 0.89910 0.89440 0.83477 0.77674 0.87597 0.90260 0.89433 0.92592 0.85847 0.86422 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.35 13.93 21.81 0.30 -50.05 16 2 C 0.04 2.57 5.39 85.23 0.46 3.03 16 3 Si 0.96 45.15 24.49 68.60 1.68 46.83 16 4 H -0.25 -10.63 6.69 99.48 0.67 -9.96 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -12.76 6.88 99.48 0.68 -12.08 16 7 C -0.49 -30.26 9.51 23.42 0.22 -30.04 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 C 0.06 3.34 5.11 -21.07 -0.11 3.23 16 10 C -0.23 -12.16 9.85 23.07 0.23 -11.93 16 11 C -0.08 -3.64 6.54 -20.61 -0.13 -3.77 16 12 C -0.27 -9.93 11.10 23.73 0.26 -9.66 16 13 C 0.08 2.35 11.59 83.41 0.97 3.32 16 14 N -0.49 -15.45 3.21 -514.58 -1.65 -17.10 16 15 C -0.02 -0.93 6.25 38.84 0.24 -0.69 16 16 C -0.07 -3.04 5.74 -20.20 -0.12 -3.15 16 17 C -0.20 -9.85 6.93 22.40 0.16 -9.69 16 18 C -0.08 -2.41 6.13 29.90 0.18 -2.22 16 19 C -0.13 -2.72 5.75 30.77 0.18 -2.55 16 20 C 0.11 2.34 7.20 86.42 0.62 2.97 16 21 H 0.29 15.18 8.30 -92.71 -0.77 14.41 16 22 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 23 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 24 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 25 H 0.11 5.20 4.74 -2.91 -0.01 5.19 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -73.21 253.52 4.56 -68.66 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.06 Total: 12.83 kcal Atomic # 6 Polarization: -64.33 SS G_CDS: 3.16 Total: -61.17 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.35 Total: -67.15 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.68 Total: 46.83 kcal Total: -73.21 4.56 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259421932.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.876 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds